ENSG00000158417:+:2:99360235:99364421

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000158417:+:2:99360235:99364421 ENSG00000158417 MSTRG.18937.2 + 2 99360236 99364421 1253 CACCAAGGAUGACAUUGAUCUUGAUGCCUUGGCUGCAGAAAUAGAAGGAGCUGGUGCUGCCAAAGAACAGGAGCCUCAAAAGUCAAAAGGGAAAAAGAAAAAAGAGAAAAAAAAGCAGGACUUUGAUGAAGAUGAUAUCCUGAAAGAACUGGAAGAAUUGUCUUUGGAAGCUCAAGGCAUCAAAGCUGACAGAGAAACUGUUGCAGUGAAGCCAACAGAAAACAAUGAAGAGGAAUUCACCUCAAAAGAUAAAAAAAAGAAAGGACAGAAGGGCAAAAAACAGAGUUUUGAUGAUAAUGAUAGCGAAGAAUUGGAAGAUAAAGAUUCAAAAUCAAAAAAGACUGCAAAACCGAAAGUGGAAAUGUACUCUGGGAGUGAUGAUGAUGAUGAUUUUAACAAACUUCCUAAAAAAGCUAAAGGGAAAGCUCAAAAAUCAAAUAAGAAGUGGGAUGGGUCAGAGGAGGAUGAGGAUAACAGUAAAAAAAUUAAAGAGCGUUCAAGAAUAAAUUCUUCUGGUGAAAGUGGUGAUGAAUCAGAUGAAUUUUUGCAAUCUAGAAAAGGACAGAAAAAAAAUCAGAAAAACAAGCCAGGUCCUAACAUAGAAAGUGGGAAUGAAGAUGAUGACGCCUCCUUCAAAAUUAAGACAGUGGCCCAAAAGAAGGCAGAAAAGAAGGAGCGCGAGAGAAAAAAGCGAGAUGAAGAAAAAGCGAAACUGCGGAAGCUGAAAGAAAAAGAAGAGUUAGAAACAGGUAAAAAGGAUCAGAGUAAACAAAAGGAAUCUCAAAGGAAAUUUGAAGAAGAAACUGUAAAAUCCAAAGUGACUGUUGAUACUGGAGUAAUUCCUGCCUCUGAAGAGAAAGCAGAGACUCCCACAGCUGCAGAAGAUGACAAUGAAGGAGACAAAAAGAAGAAAGAUAAGAAGAAAAAGAAAGGAGAAAAGGAAGAAAAAGAGAAAGAGAAGAAAAAAGGACCUAGCAAAGCCACUGUUAAAGCUAUGCAAGAAGCUCUGGCUAAGCUUAAAGAGGAAGAAGAAAGACAGAAGAGAGAAGAGGAAGAACGUAUAAAACGGCUUGAAGAAUUAGAAGCCAAGCGUAAAGAAGAGGAACGAUUGGAACAAGAAAAAAGAGAAAGGAAAAAGCAAAAAGAAAAAGAAAGAAAAGAACGCUUGAAAAAAGAAGGGAAACUUUUAACUAAAUCCCAGAGAGAAGCCAGAGCCAGAGCCGAAGCUACUCUUAAACUGCUACAAGCUCAGGCACCAAGGAUGACAUUGAUCUUGAUGCCUUGGCUGCAGAAAUAGAAGGAG circ
ENSG00000158417:+:2:99360235:99364421 ENSG00000158417 MSTRG.18937.2 + 2 99360236 99364421 22 ACAAGCUCAGGCACCAAGGAUG bsj
ENSG00000158417:+:2:99360235:99364421 ENSG00000158417 MSTRG.18937.2 + 2 99360036 99360245 210 UGUAAUCCAGAAACUUCACUGAAGCAGAUGUAGGGAGGCUGAUAAGUAGAUGUAACUUGUGUUGUAAUGAAAGAACUUGCCAAAUGAUUUUUCUCAUUGUGCUGCUAAUGCAUGAAAAAGGUUAAAAUGAUAAAAUCUAUAUAAAUGAAUGAUUAUUUUGCUUUUAAGUAGCAUUUAGGAUGUUUUUGUUUUCAUUUAAGCACCAAGGAU ie_up
ENSG00000158417:+:2:99360235:99364421 ENSG00000158417 MSTRG.18937.2 + 2 99364412 99364621 210 CAAGCUCAGGGUGAGUGGUACUCUUCAUUAACUGAAUGGUCAGAGAGCUCUGCACAUGCAGUUAUAUCCCUUAAUGUUCAGAAGGAGAAUGGAAUUUGCAUCAGGACAGUUCCUAUGAAAAAUCUGUGAAAAAGUUCAGUAAAACGUAAGGAAUAGGUGAUGUCAUUUCAUUGUUUAGGAAGAUGACAUCUACAUGAGGAUAAAAAUUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC4 38 1251 0.031125299 0.0018144033 4.100521 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGHMBP2 19 813 0.015961692 0.0011796520 3.758180 AAAAAA AAAAAA
PABPN1 26 1222 0.021548284 0.0017723764 3.603816 AAAAGA,AGAAGA AAAAGA,AGAAGA
SART3 54 2634 0.043894653 0.0038186524 3.522910 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF11 11 688 0.009577015 0.0009985015 3.261740 AAGAAG AAGAAG
CNOT4 4 314 0.003990423 0.0004564992 3.127857 GACAGA GACAGA
TRA2A 102 6871 0.082202713 0.0099589296 3.045123 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PABPC5 31 2400 0.025538707 0.0034795387 2.875718 AGAAAA,AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
AGO2 23 1830 0.019154030 0.0026534924 2.851684 AAAAAA,AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC1 57 4443 0.046288907 0.0064402624 2.845475 AAAAAA,AAAAAC,ACAAAC,AGAAAA,CAAAUA,CUAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRSF4 46 3740 0.037509976 0.0054214720 2.790518 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SYNCRIP 19 1634 0.015961692 0.0023694485 2.751990 AAAAAA AAAAAA,UUUUUU
TRA2B 87 7329 0.070231445 0.0106226650 2.724971 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF10 145 13860 0.116520351 0.0200874160 2.536218 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPU 19 1965 0.015961692 0.0028491350 2.486018 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
FXR1 3 411 0.003192338 0.0005970720 2.418637 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBMX 39 4925 0.031923384 0.0071387787 2.160864 AAGAAG,AAGGAA,AGAAGG,AGGAAG,AUCAAA,AUCCCA,GAAGGA,UAACAA,UAAGAC,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPM 7 999 0.006384677 0.0014492040 2.139353 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM46 35 4554 0.028731045 0.0066011240 2.121827 AAUCAA,AAUGAA,AAUGAU,AUCAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 10 1498 0.008778931 0.0021723567 2.014784 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPD 19 2837 0.015961692 0.0041128408 1.956406 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC3 7 1234 0.006384677 0.0017897669 1.834842 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SRSF7 90 14481 0.072625698 0.0209873716 1.790959 AAAGGA,AAGAAG,AAGGAC,AAUGAU,ACGAUU,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGGAAG,AGGACA,AUAGAA,AUUGAU,CAGAGA,CGAGAG,CGAGAU,CGAUUG,GAAGAA,GAAGGC,GAAUGA,GACAAA,GAGACU,GAGAGA,GAGGAA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SRSF5 53 8869 0.043096568 0.0128544391 1.745306 AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UGCAGA,UGCGGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
FUS 21 3648 0.017557861 0.0052881452 1.731283 AAAAAA,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZFP36 168 28400 0.134876297 0.0411588414 1.712363 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAUAAA,AAUAAG,ACAAAC,ACAAGC,ACUUCC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAG,AUAAAU,CAAAGA,CAAAUA,CAAGGA,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UCCUGC,UCCUUC,UCUUCU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
RBM5 38 6879 0.031125299 0.0099705232 1.642347 AAAAAA,AAGGAA,AAGGAG,AGGGAA,AGGUAA,CAAGGA,GAAGGA,GAAGGG,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPA3 11 2140 0.009577015 0.0031027457 1.626031 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
DAZAP1 31 5964 0.025538707 0.0086445016 1.562831 AAAAAA,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGUAAA,AGUUAG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
RBM42 1 407 0.001596169 0.0005912752 1.432712 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
G3BP2 7 1644 0.006384677 0.0023839405 1.421265 AGGAUA,AGGAUG,GGAUAA,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 5 1237 0.004788508 0.0017941145 1.416304 AAUCAA,AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPA2B1 40 8607 0.032721468 0.0124747476 1.391227 AAGAAG,AAGGAA,AAGGAG,AGAAGC,AGGAAC,AGGAGC,CAAGAA,CAAGGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
HNRNPAB 7 1782 0.006384677 0.0025839306 1.305046 AAAGAC,AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBFOX2 1 452 0.001596169 0.0006564894 1.281770 UGACUG UGACUG,UGCAUG
RBM3 8 2152 0.007182761 0.0031201361 1.202930 AAAACG,AAGACU,GAAACU,GAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMY1A1 1 489 0.001596169 0.0007101099 1.168499 ACAAGA ACAAGA,CAAGAC
KHDRBS3 13 3429 0.011173184 0.0049707696 1.168499 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL4 19 5105 0.015961692 0.0073996354 1.109087 AAAAAA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
FXR2 12 3434 0.010375100 0.0049780156 1.059483 AGACAA,AGACAG,GACAAA,GACAGA,GGACAG,UGACAA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPA1 65 18070 0.052673583 0.0261885646 1.008143 AAAAAA,AAAGAG,AAGAGG,AAGGAG,AGAGGA,AGGAAG,AGGAGC,AGGGCA,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUUAGA,CAAAGA,CAAGGA,CCAAGG,GAGGAA,GAGGAG,GCCAAG,GGACUU,GGAGCC,GGAGGA,GUGGUG,UGGUGC AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
G3BP1 2 69 0.13636364 0.004584752 4.894471 AGGCAC,CAGGCA ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
FMR1 1 117 0.09090909 0.007728583 3.556149 AGGCAC AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SFPQ 1 153 0.09090909 0.010086455 3.172005 CAGGCA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF1 1 625 0.09090909 0.041000786 1.148773 GCACCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM46 12 1091 0.030952381 0.0055018138 2.492071 AAUGAA,AAUGAU,AUGAAA,AUGAAU,AUGAUA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPA3 3 349 0.009523810 0.0017634019 2.433177 AAGGAG,CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,AGGAUG,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TARDBP 7 1034 0.019047619 0.0052146312 1.868974 GAAUGA,GAAUGG,UGAAUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 CUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAG AAAAAA,AAAAAG
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACG,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAAGAA,AAGAAC,AAGGAA,AGAAGG,AGGAAG,GAAAGA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SART3 3 777 0.009523810 0.0039197904 1.280762 GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA2B1 9 2033 0.023809524 0.0102478839 1.216213 AAGGAA,AAGGAG,AAUUUA,AUUUAA,CAAGGA,CCAAGG,GAAGGA,GUAGGG,UAGGGA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCCCUU,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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