ENSG00000086200:+:5:62437273:62515501

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000086200:+:5:62437273:62515501 ENSG00000086200 ENST00000409296 + 5 62437274 62515501 1902 GUUUCCAUGGAUCUCAAUAGUGCCAGCACUGUUGUUCUUCAGGUGUUAACACAGGCCACCAGUCAGGAUACUGCUGUGUUAAAACCAGCUGAGGAGCAGUUGAAGCAGUGGGAGACACAGCCAGGUUUCUAUUCAGUGUUGCUGAAUAUUUUCACCAACCACACUUUGGAUAUAAAUGUAAGGUGGCUUGCUGUACUGUAUUUUAAACAUGGAAUUGAUCGCUACUGGAGACGUGUAGCACCUCAUGCUCUCUCAGAGGAGGAGAAAACUACUCUGCGUGCAGGGCUCAUCACCAACUUCAAUGAACCAAUAAACCAGAUUGCAACUCAGAUUGCAGUGCUCAUUGCAAAAGUUGCUAGAUUGGAUUGUCCCAGACAGUGGCCUGAACUAAUUCCCACUCUUAUAGAGUCUGUUAAAGUCCAGGAUGAUCUUCGACAGCACAGAGCAUUACUUACCUUCUAUCAUGUUACCAAGACACUGGCAUCUAAACGACUUGCUGCUGAUAGAAAACUAUUUUAUGAUUUAGCUUCUGGAAUUUAUAAUUUUGCCUGCUCUCUGUGGAAUCACCACACAGACACAUUCCUGCAAGAAGUUUCUUCUGGCAAUGAAGCUGCAAUUUUGAGUUCACUAGAACGAACACUGCUAUCAUUGAAAGUGCUGCGUAAGUUAACUGUUAAUGGAUUUGUGGAACCUCAUAAGAAUAUGGAGGUGAUGGGUUUUUUACAUGGAAUAUUUGAACGUCUAAAACAGUUUCUGGAAUGCAGUAGAAGUAUAGGUACAGAUAAUGUGUGUAGAGAUAGACUGGAAAAGACCAUCAUUCUUUUUACUAAAGUGCUUUUGGACUUCUUGGAUCAGCAUCCUUUUUCAUUUACUCCUCUAAUUCAGAGAUCACUGGAAUUUUCUGUAAGCUAUGUUUUUACAGAAGUUGGUGAAGGCGUUACAUUUGAACGAUUCAUUGUCCAAUGUAUGAAUCUUAUUAAGAUGAUUGUCAAAAAUUAUGCUUAUAAGCCAUCCAAAAAUUUUGAAGAUAGCAGCCCUGAAACUCUUGAAGCCCAUAAGAUUAAGAUGGCAUUCUUCACAUAUCCUACUUUGACAGAGAUAUGUAGAAGAUUAGUCUCUCAUUAUUUCCUAUUAACUGAAGAAGAACUGACAAUGUGGGAAGAAGACCCAGAAGGCUUUACAGUGGAAGAAACAGGAGGAGAUUCUUGGAAAUAUAGUUUGAGGCCAUGCACUGAAGUAUUAUUUAUAGAUAUAUUCCAUGAAUAUAAUCAGACUCUUACUCCUGUACUUCUAGAAAUGAUGCAAACACUUCAAGGACCCACAAAUGUGGAAGAUAUGAAUGCACUGUUAAUCAAAGAUGCUGUGUAUAAUGCUGUUGGAUUAGCUGCUUAUGAGCUCUUUGACAGUGUUGAUUUUGAUCAGUGGUUUAAAAACCAGCUUCUUCCAGAAUUACAAGUCAUUCACAAUAGGUAUAAGCCAUUGCGACGCAGGGUGAUUUGGCUCAUCGGUCAGUGGAUUUCUGUGAAAUUCAAGUCUGACUUAAGACCCAUGCUUUAUGAAGCAAUCUGUAACUUGCUUCAAGAUCAAGAUUUAGUGGUCCGUAUUGAAACAGCUACAACUUUGAAGUUAACUGUUGAUGAUUUUGAAUUUAGAACAGAUCAGUUUCUACCGUAUUUGGAAACCAUGUUCACACUACUUUUUCAGUUACUGCAGCAAGUUACAGAAUGUGACACAAAGAUGCAUGUUUUGCAUGUCCUUUCUUGUGUGAUCGAAAGAGUCAACAUGCAGAUACGACCAUAUGUGGGAUGUUUGGUACAAUAUUUGCCCCUCCUUUGGAAGCAGAGUGAAGAACACAAUAUGUUGAGAUGUGCUAUUUUGACAACACUUAUUCAUCUUGUUCAGGUUUCCAUGGAUCUCAAUAGUGCCAGCACUGUUGUUCUUCAGGUGUUAAC circ
ENSG00000086200:+:5:62437273:62515501 ENSG00000086200 ENST00000409296 + 5 62437274 62515501 22 AUCUUGUUCAGGUUUCCAUGGA bsj
ENSG00000086200:+:5:62437273:62515501 ENSG00000086200 ENST00000409296 + 5 62437074 62437283 210 UGAUUUAAGCAAAAAUAAUUUGAUUAUGAAUUUUAAGGAUGAGUAUGGGGUAUACUUAGAAAAGAUAGAAAGGCAGAACAUGAAGGAUUAGAUGAAUGGGAGUAAUUCAGAACAUGAAAGCUUUUUGUCUCCAUUUAUUUUACUGUUAAUUUUUUAUUACUUGUAAUACAUAUUCAAGUAUGUUAACUUAUCAUUGCCAGGUUUCCAUGG ie_up
ENSG00000086200:+:5:62437273:62515501 ENSG00000086200 ENST00000409296 + 5 62515492 62515701 210 UCUUGUUCAGGUAAGUCACUUCUCCACAGAGUUUUUUUAGUUUAGUGGUUUUUAAAAAAUUCUUUUAACCAUUUAAAAAUUGUUUUUAUGUGAUUUAUGUUAAUGGUAGUGAAAAACUUCACAUAUCUUUUAUUUUUUUUUCCAUGUGUGAUCUAAACCGAUUUAAAAACAACUUUUGCAUGCUUAUUUUGGACAUUUUUUUGAGGAUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 5 453 0.003154574 0.0006579386 2.261420 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
PTBP2 2 267 0.001577287 0.0003883867 2.021880 CUCUCU CUCUCU
SNRPB2 7 991 0.004206099 0.0014376103 1.548810 AUUGCA,GUAUUG,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 3 497 0.002103049 0.0007217036 1.543004 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM42 2 407 0.001577287 0.0005912752 1.415544 AACUAA,AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBM28 5 822 0.003154574 0.0011926949 1.403220 AGUAGA,GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ACO1 8 1283 0.004731861 0.0018607779 1.346502 CAGUGC,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF2 12 1886 0.006834911 0.0027346479 1.321567 AUGUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
EIF4B 7 1179 0.004206099 0.0017100607 1.298435 CUUGGA,GUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
MATR3 4 739 0.002628812 0.0010724109 1.293553 AAUCUU,AUCUUA,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBFOX2 2 452 0.001577287 0.0006564894 1.264602 UGCAUG UGACUG,UGCAUG
SNRNP70 7 1237 0.004206099 0.0017941145 1.229211 AAUCAA,AUCAAG,AUUCAA,GAUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CNOT4 1 314 0.001051525 0.0004564992 1.203798 GACAGA GACAGA
SSB 7 1260 0.004206099 0.0018274462 1.202654 GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZCRB1 9 1605 0.005257624 0.0023274215 1.175678 ACUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GGAUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM41 7 1318 0.004206099 0.0019115000 1.137778 UACAUG,UACAUU,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 10 1830 0.005783386 0.0026534924 1.124022 AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
ANKHD1 1 339 0.001051525 0.0004927293 1.093615 AGACGU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SRSF11 3 688 0.002103049 0.0009985015 1.074646 AAGAAG AAGAAG
PABPC3 6 1234 0.003680336 0.0017897669 1.040066 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
CSTF2 10 1967 0.005783386 0.0028520334 1.019924 GUGUGU,GUGUUG,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZRANB2 1 45 0.09090909 0.003012837 4.915230 AGGUUU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SRSF6 1 68 0.09090909 0.004519256 4.330267 UUCAGG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SRSF1 1 625 0.09090909 0.041000786 1.148773 UCAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
CPEB4 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
DDX19B 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
EIF4A3 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
G3BP2 5 490 0.014285714 0.0024738009 2.529772 AGGAUG,AGGAUU,GGAUGA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ZCRB1 7 666 0.019047619 0.0033605401 2.502846 AUUUAA,GAUUUA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL3 22 1928 0.054761905 0.0097188634 2.494313 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RALY 12 1117 0.030952381 0.0056328094 2.458124 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZFP36L2 8 774 0.021428571 0.0039046755 2.456261 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPCL1 15 1381 0.038095238 0.0069629182 2.451847 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
U2AF2 11 1071 0.028571429 0.0054010480 2.403262 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPC 20 2006 0.050000000 0.0101118501 2.305881 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ELAVL4 29 2916 0.071428571 0.0146966949 2.281010 AAAAAA,AUCUAA,AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS1 19 1945 0.047619048 0.0098045143 2.280021 AUUUAA,UAAAAA,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
CPEB2 14 1487 0.035714286 0.0074969770 2.252120 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ELAVL1 32 3309 0.078571429 0.0166767432 2.236167 AUUUAU,UAGUUU,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGUUU,UUUAGU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACAU,AUACUU,UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPU 10 1136 0.026190476 0.0057285369 2.192804 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS2 9 1051 0.023809524 0.0053002821 2.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
TIAL1 50 5597 0.121428571 0.0282043531 2.106118 AAUUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
TIA1 42 5140 0.102380952 0.0259018541 1.982820 AUUUUG,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 81 9826 0.195238095 0.0495112858 1.979405 AAUUUG,AAUUUU,AUACUU,AUUUAA,AUUUAU,AUUUUA,AUUUUG,AUUUUU,CAUUUU,CUUUUA,CUUUUU,GAUUUA,GUUUUU,UAAUUU,UAUACU,UAUGUU,UAUUUU,UCUUUU,UGAUUU,UUAAUU,UUACUU,UUAGUU,UUAUGU,UUAUUU,UUCUUU,UUGAUU,UUUAAG,UUUACU,UUUAGU,UUUAUG,UUUAUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF2 6 881 0.016666667 0.0044437727 1.907109 AUGUGU,GUAUGU,UAUGUG,UAUGUU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
NOVA1 10 1428 0.026190476 0.0071997179 1.863030 AGUCAC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
NOVA2 9 1434 0.023809524 0.0072299476 1.719482 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
PPIE 63 9262 0.152380952 0.0466696896 1.707125 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAUAAU,AAUUUU,AUAAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAUUU,UAUUUU,UUAAAA,UUAAUU,UUAUUA,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAAUAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FUS 10 1711 0.026190476 0.0086255542 1.602353 AAAAAA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AUCAUU,AUGAAA,AUGAAG,AUGAAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
DAZAP1 17 2878 0.042857143 0.0145052398 1.562962 AAAAAA,AGGAUG,AGGUAA,AGUAUG,AGUUUA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGG,UGAAUG,UGUGUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,AAAACA,AAAUUC,AAUACA,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,AGAAAG AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA1 30 6340 0.073809524 0.0319478033 1.208090 AAAAAA,AGUGAA,AGUGGU,AUAGAA,AUUAGA,AUUUAA,AUUUAU,GAUUAG,GUAAGU,GUUUAG,UAGUGA,UUAGAU,UUAUUU,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SFPQ 30 7087 0.073809524 0.0357114067 1.047422 AAGCAA,GAAGGA,GGUAAG,GUAAUU,GUAGUG,GUGAUU,GUGGUU,UAAGGA,UAAUGG,UAAUUU,UAGUGG,UAGUUU,UGAUUU,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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