ENSG00000138777:-:4:105424195:105456745

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000138777:-:4:105424195:105456745 ENSG00000138777 ENST00000341695 - 4 105424196 105456745 498 AGAAUGUAACUGGUCACUACAUUUCCCCCUUUCAUGAUAUUCCUCUGAAGGUGAACUCUAAAGAGGAAAAUGGCAUUCCUAUGAAGAAAGCACGAAAUGAUGAAUAUGAGAAUCUGUUUAAUAUGAUUGUAGAAAUACCUCGGUGGACAAAUGCUAAAAUGGAGAUUGCCACCAAGGAGCCAAUGAAUCCCAUUAAACAAUAUGUAAAGGAUGGAAAGCUACGCUAUGUGGCGAAUAUCUUCCCUUACAAGGGUUAUAUAUGGAAUUAUGGUACCCUCCCUCAGACUUGGGAAGAUCCCCAUGAAAAAGAUAAGAGCACGAACUGCUUUGGAGAUAAUGAUCCUAUUGAUGUUUGCGAAAUAGGCUCAAAGAUUCUUUCUUGUGGAGAAGUUAUUCAUGUGAAGAUCCUUGGAAUUUUGGCUCUUAUUGAUGAAGGUGAAACAGAUUGGAAAUUAAUUGCUAUCAAUGCGAAUGAUCCUGAAGCCUCAAAGUUUCAUGAGAAUGUAACUGGUCACUACAUUUCCCCCUUUCAUGAUAUUCCUCUGAAG circ
ENSG00000138777:-:4:105424195:105456745 ENSG00000138777 ENST00000341695 - 4 105424196 105456745 22 AAAGUUUCAUGAGAAUGUAACU bsj
ENSG00000138777:-:4:105424195:105456745 ENSG00000138777 ENST00000341695 - 4 105456736 105456945 210 UUUAGCCGGUAUAUAUUUCUUUUCGGUCCUUAGAUGGUGGCAAGUUUUAAAAGUUGAAUUAACUUUAAGUUGGGAGUUAAAGUUAGCUUUGUAAAAAAUGCGUAAGUUUAAAAGUGGAUAAGGAUGUUUAUUAUUGCUGUAUAGAACAAUGUGUCUAUUGCUUUAAUUCUGUUUUGUUUUGUUUGUUUGUGUCUUUGCAGAGAAUGUAAC ie_up
ENSG00000138777:-:4:105424195:105456745 ENSG00000138777 ENST00000341695 - 4 105423996 105424205 210 AAGUUUCAUGGUAAGACUGUUACUUUCCAGAAAGUGAAAGCAAAUUAGUGUGUCAUUGGAAUUCUGAGAACUUAAAAGAAGUUCACAUAGGGGAGUUAAAUGUACUUUUUAAAAAAGAGAGAGGAAAAGAUGUAGAUAGACAAAUUAUAUUUUAAAUGAAGAAAGUACAUUCUACUGGUUUCCCUCUAUUCCCUUUUUCUUCCCUCUCCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 2 426 0.006024096 0.0006188101 3.283176 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 1 497 0.004016064 0.0007217036 2.476304 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM46 15 4554 0.032128514 0.0066011240 2.283071 AAUGAA,AAUGAU,AUCAAU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
EIF4B 3 1179 0.008032129 0.0017100607 2.231735 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 1 678 0.004016064 0.0009840095 2.029038 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 5 2140 0.012048193 0.0031027457 1.957199 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ZCRB1 3 1605 0.008032129 0.0023274215 1.787050 AAUUAA,GAAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM28 1 822 0.004016064 0.0011926949 1.751557 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGF2BP1 1 831 0.004016064 0.0012057377 1.735866 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBMS3 2 1283 0.006024096 0.0018607779 1.694839 AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 3 1890 0.008032129 0.0027404447 1.551372 UAUAUA,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC5 4 2400 0.010040161 0.0034795387 1.528814 AGAAAG,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NONO 2 1498 0.006024096 0.0021723567 1.471484 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
A1CF 2 1642 0.006024096 0.0023810421 1.339152 UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 2 1644 0.006024096 0.0023839405 1.337397 AGGAUG,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PUM1 9 5823 0.020080321 0.0084401638 1.250439 AGAUAA,AUUGUA,UAAUAU,UAUAUA,UGUAAA,UGUAGA,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPAB 2 1782 0.006024096 0.0025839306 1.221178 CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 1222 0.004016064 0.0017723764 1.180097 AAAAGA AAAAGA,AGAAGA
LIN28A 6 4315 0.014056225 0.0062547643 1.168182 GGAGAA,GGAGAU,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
PABPC4 1 1251 0.004016064 0.0018144033 1.146287 AAAAAG AAAAAA,AAAAAG
SSB 1 1260 0.004016064 0.0018274462 1.135953 CUGUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM41 1 1318 0.004016064 0.0019115000 1.071077 UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
KHDRBS3 4 3429 0.010040161 0.0049707696 1.014241 AGAUAA,AUUAAA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF9 2 134 0.13636364 0.008842023 3.946939 AUGAGA,UGAGAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF2 1 479 0.09090909 0.031438302 1.531901 GAGAAU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PABPN1 3 178 0.009523810 0.0009018541 3.400573 AAAAGA AAAAGA,AGAAGA
SNRPB2 3 288 0.009523810 0.0014560661 2.709463 UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
PUM2 8 764 0.021428571 0.0038542926 2.474998 GUACAU,GUAGAU,GUAUAU,UAGAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
NONO 3 364 0.009523810 0.0018389762 2.372636 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 UACAUU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 4 505 0.011904762 0.0025493753 2.223323 CUGUUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AGO2 5 677 0.014285714 0.0034159613 2.064210 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC4 3 462 0.009523810 0.0023327287 2.029520 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGHMBP2 2 350 0.007142857 0.0017684401 2.014024 AAAAAA AAAAAA
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2A 8 1133 0.021428571 0.0057134220 1.907109 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAGGA,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUGU,GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,ACUUAA,GAAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SRSF10 18 2937 0.045238095 0.0148024990 1.611697 AAAAGA,AAAGAA,AAAGAG,AAGAAA,AAGAAG,AAGAGA,AGACAA,AGAGAA,AGAGAG,AGAGGA,GACAAA,GAGAAC,GAGAGA,GAGAGG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
CELF1 6 1097 0.016666667 0.0055320435 1.591081 GUGUGU,GUUUGU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 UAAAAA,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUG,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRSF7 14 2893 0.035714286 0.0145808142 1.292430 AAGAAG,AGAGAA,AGAGAG,AGAGGA,AUAGAA,AUAGAC,CAGAGA,CUGAGA,GAAGAA,GACAAA,GAGAGA,GAGGAA,GAUAGA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
PUM1 10 2172 0.026190476 0.0109482064 1.258348 CCAGAA,GUACAU,GUAGAU,GUAUAU,UAGAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GAAUGU,GUGUGU,GUUUUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,GUGUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,CACAUA,GAAGAA,GAGGAA,UGCAGA,UGCGUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
PPIE 39 9262 0.095238095 0.0466696896 1.029053 AAAAAA,AAAAAU,AAAUUA,AAUUAA,AAUUAU,AUAUAU,AUAUUU,AUUAUA,AUUAUU,AUUUUA,UAAAAA,UAUAUA,UAUAUU,UAUUAU,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUAUAU,UUAUUA,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home