ENSG00000105281:-:19:46776974:46784559

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000105281:-:19:46776974:46784559 ENSG00000105281 ENST00000542575 - 19 46776975 46784559 822 AAAUAUCUUCCCUUCCAACCUGGUGUCAGCAGCCUUUCGCUCAUACUCUACCACCUAUGAAGAGAGGAAUAUCACCGGAACCAGGGUGAAGGUGCCCGUGGGGCAGGAGGUGGAGGGGAUGAACAUCCUGGGCUUGGUAGUGUUUGCCAUCGUCUUUGGUGUGGCGCUGCGGAAGCUGGGGCCUGAAGGGGAGCUGCUUAUCCGCUUCUUCAACUCCUUCAAUGAGGCCACCAUGGUUCUGGUCUCCUGGAUCAUGUGGUACGCCCCUGUGGGCAUCAUGUUCCUGGUGGCUGGCAAGAUCGUGGAGAUGGAGGAUGUGGGUUUACUCUUUGCCCGCCUUGGCAAGUACAUUCUGUGCUGCCUGCUGGGUCACGCCAUCCAUGGGCUCCUGGUACUGCCCCUCAUCUACUUCCUCUUCACCCGCAAAAACCCCUACCGCUUCCUGUGGGGCAUCGUGACGCCGCUGGCCACUGCCUUUGGGACCUCUUCCAGUUCCGCCACGCUGCCGCUGAUGAUGAAGUGCGUGGAGGAGAAUAAUGGCGUGGCCAAGCACAUCAGCCGUUUCAUCCUGCCCAUCGGCGCCACCGUCAACAUGGACGGUGCCGCGCUCUUCCAGUGCGUGGCCGCAGUGUUCAUUGCACAGCUCAGCCAGCAGUCCUUGGACUUCGUAAAGAUCAUCACCAUCCUGGUCACGGCCACAGCGUCCAGCGUGGGGGCAGCGGGCAUCCCUGCUGGAGGUGUCCUCACUCUGGCCAUCAUCCUCGAAGCAGUCAACCUCCCGGUCGACCAUAUCUCCUUGAUCCUGGCUGUGGACUGGCUAGUAAAUAUCUUCCCUUCCAACCUGGUGUCAGCAGCCUUUCGCUCAUACUCUA circ
ENSG00000105281:-:19:46776974:46784559 ENSG00000105281 ENST00000542575 - 19 46776975 46784559 22 GACUGGCUAGUAAAUAUCUUCC bsj
ENSG00000105281:-:19:46776974:46784559 ENSG00000105281 ENST00000542575 - 19 46784550 46784759 210 GGCUGACUCCCCAAGUCCUGCAAAGGGGUGCAAGCCUAGUUCCAACCCUGCCGGGCUGAGGCAUGAGUAGGGGCUGUAUUUGCGUGCAGGCGGGCCCCCAAAGCUUCCACUCGCUGCCUUAAAACGCCAACCCAGCCUCUCAGACAAUGCUGCCCUCCCACUAUGGUAUCUAAUAACCCUCUGUGUGUCUGUCUCUGCAGAAAUAUCUUC ie_up
ENSG00000105281:-:19:46776974:46784559 ENSG00000105281 ENST00000542575 - 19 46776775 46776984 210 ACUGGCUAGUGUGAGUGUGGGUCUGGAGACUGGGGCAGGGCCAGGGGUACCCCUGGGAAAGAGGAUGAGUGAGUGAGAGUCCUUAGAGCCUCUGGACAGAAGAGGAAGAGAAGAAGGAAGGAAUUCUGGAGGAAAUGGGGGGAACCUUGAGCAUUCCUGAGGGCAAGGAAUGGCAUCUUUGUGGCUCUAAGAGGGAUGUCAGAAAAGUAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 268 0.002433090 0.0003898359 2.641851 CGGGCA AUCGGG,CGGGCA,UCGGGC
NXF1 1 286 0.002433090 0.0004159215 2.548406 AACCUG AACCUG
PPRC1 3 780 0.004866180 0.0011318283 2.104135 CCGCGC,CGGCGC,GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
AGO1 1 548 0.002433090 0.0007956130 1.612651 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
IGF2BP1 2 831 0.003649635 0.0012057377 1.597836 AAGCAC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
IFIH1 2 904 0.003649635 0.0013115296 1.476502 GCCGCG,GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM8A 1 611 0.002433090 0.0008869128 1.455925 CGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SAMD4A 11 3992 0.014598540 0.0057866714 1.335018 CGGGCA,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGC,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
CELF6 8 2997 0.010948905 0.0043447134 1.333454 GUGGGG,GUGUGG,UGUGGG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBM4 8 3065 0.010948905 0.0044432593 1.301096 CCUCUU,CCUUCC,CUCUUU,CUUCCU,CUUCUU,UCCUUC CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ZC3H10 2 1053 0.003649635 0.0015274610 1.256617 CCAGCG,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RC3H1 4 1786 0.006082725 0.0025897275 1.231918 CCCUUC,UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
LIN28A 11 4315 0.014598540 0.0062547643 1.222797 AGGAGA,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
NONO 3 1498 0.004866180 0.0021723567 1.163529 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
NELFE 7 3028 0.009732360 0.0043896388 1.148687 CUCUGG,CUGGCU,GGUCUC,UCUGGC,UCUGGU,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
EIF4B 2 1179 0.003649635 0.0017100607 1.093705 CUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SRSF3 41 16536 0.051094891 0.0239654858 1.092221 ACAUCA,ACAUUC,ACCACC,ACUUCG,AUCAUC,AUCUUC,CACAUC,CAUCAC,CAUCAU,CAUCGU,CCACCA,CCUCUU,CGCUUC,CUCUUC,CUUCAA,CUUCAC,CUUCUU,GACUUC,GUCAAC,UACUUC,UCAUCA,UCAUCC,UCAUCU,UCUUCA,UCUUCC,UUCAAC,UUCAUC,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
PABPC3 2 1234 0.003649635 0.0017897669 1.027981 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM46 10 4554 0.013381995 0.0066011240 1.019510 AUCAUG,AUGAAG,AUGAUG,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
MBNL1 31 13372 0.038929440 0.0193802045 1.006278 ACGCUG,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUUC,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUG,CUGCUU,GCGCUC,GCGCUG,GCUGCG,GCUGCU,GUGCUG,UCCGCU,UCGCUC,UGCUGC,UUCGCU,UUGCCA,UUGCCC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PUM2 2 7 0.13636364 0.0005239717 8.023754 GUAAAU,UAAAUA GUAAAU,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA
PUM1 2 16 0.13636364 0.0011134399 6.936292 GUAAAU,UAAAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAUAA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUAAUG
KHDRBS3 1 13 0.09090909 0.0009169505 6.631437 UAAAUA AAAUAA,AGAUAA,AUAAAG,AUUAAA,GAUAAA,UAAAUA,UUAAAC
MSI1 1 23 0.09090909 0.0015719151 5.853829 UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG
DAZAP1 2 36 0.13636364 0.0024233691 5.814301 AGUAAA,UAGUAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
SF1 1 24 0.09090909 0.0016374116 5.794936 UAGUAA ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
HNRNPDL 1 35 0.09090909 0.0023578727 5.268867 CUAGUA AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG
PPIE 1 61 0.09090909 0.0040607807 4.484596 UAAAUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUUAA,UAAAAA,UAAAUA,UAAAUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAUUA
ZFP36 2 126 0.13636364 0.0083180508 4.035070 AGUAAA,UAAAUA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
HNRNPM 6 222 0.016666667 0.0011235389 3.890844 AAGGAA,GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
SRSF4 9 558 0.023809524 0.0028164047 3.079612 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AGAAGA AAAAGA,AGAAGA
TRA2A 16 1133 0.040476190 0.0057134220 2.824647 AAGAAG,AAGAGG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM24 12 888 0.030952381 0.0044790407 2.788789 AGUGUG,GAGUGA,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
NONO 4 364 0.011904762 0.0018389762 2.694564 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TRA2B 15 1447 0.038095238 0.0072954454 2.384543 AAGAAG,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGG,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBMX 10 1316 0.026190476 0.0066354293 1.980781 AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SRSF10 21 2937 0.052380952 0.0148024990 1.823202 AAAGAG,AAAGGG,AAGAAG,AAGAGA,AAGAGG,AAGGAA,AAGGGG,AGACAA,AGAGAA,AGAGGA,AGAGGG,GAAAGA,GAGAAG,GAGGAA,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF5 10 1578 0.026190476 0.0079554615 1.719025 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA2B1 12 2033 0.030952381 0.0102478839 1.594724 AAGAAG,AAGGAA,AAGGGG,AGGGGC,AGUAGG,CAAGGA,GAAGGA,GGAACC,GUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
HNRNPF 20 3360 0.050000000 0.0169336961 1.562031 AAGGGG,AGGAAG,AGGGAU,AUGGGG,CUGGGG,GAGGAA,GGAAGG,GGAAUG,GGAGGA,GGGAUG,GGGCUG,GGGGAA,GGGGCU,GGGGGG,GGGGUA,UGGGAA,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AGACAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NELFE 5 1059 0.014285714 0.0053405885 1.419503 CUCUGG,CUGGCU,GUCUCU,UCUCUG,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACG,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF7 15 2893 0.038095238 0.0145808142 1.385539 AAGAAG,AGAAGA,AGAGAA,AGAGGA,AGGAAG,GAAGAA,GAGACU,GAGGAA,GGAAGG,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SFPQ 38 7087 0.092857143 0.0357114067 1.378628 AAGAGG,AAGGAA,ACUGGG,AGAGGA,AGGGAU,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGGA,GACUGG,GAGGAA,GCAGGC,GGAAGA,GGAGGA,GGGGGA,GGGGGG,GGUCUG,GUCUGG,UAAGAG,UAGGGG,UAGUGU,UCUAAG,UCUGGA,UGCAGG,UGGAGA,UGGAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAA,GACAGA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 CAGACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CGGGCC,CUGGAC,GCGGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPH1 16 3406 0.040476190 0.0171654575 1.237565 AAGGGG,AGGAAG,CUGGGG,GAGGAA,GGAAGG,GGAAUG,GGAGGA,GGGCUG,GGGGAA,GGGGCU,GGGGGG,UGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GCGUGC,GGGUAC,GGGUGC,UCCUGC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
FMR1 24 5430 0.059523810 0.0273629585 1.121243 AAGGAA,ACUGGG,AGGAAG,AGGAAU,AGGAUG,CUAUGG,CUGAGG,GAAGGA,GACUGG,GAGGAU,GCUGAG,GGACAG,GGCUGA,GGGCUG,GGGGGG,GUGGCU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 CUGUCU,GUGUGU,UGUCUG,UGUGUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUCUGU,GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPH2 13 3198 0.033333333 0.0161174929 1.048338 AAGGGG,CUGGGG,GGAAGG,GGAAUG,GGAGGA,GGGCUG,GGGGAA,GGGGCU,GGGGGA,GGGGGG,UGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAGGAA,AAGGGG,CAAGGA,GAAGGA,GAGGGA,GGGGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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