circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000135945:-:2:99462495:99464985
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000135945:-:2:99462495:99464985 | ENSG00000135945 | MSTRG.18938.7 | - | 2 | 99462496 | 99464985 | 191 | AAGCUCCACCAUGAGGCGAGGUGGAUGGAGGAAGCGAGCUGAAAAUGAUGGCUGGGAAACAUGGGGUGGGUAUAUGGCUGCCAAGGUCCAGAAAUUGGAGGAACAGUUUCGAUCAGAUGCUGCUAUGCAGAAGGAUGGGACUUCAUCUACAAUUUUUAGUGGAGUUGCCAUCUAUGUUAAUGGAUACACAGAAGCUCCACCAUGAGGCGAGGUGGAUGGAGGAAGCGAGCUGAAAAUGAUG | circ |
| ENSG00000135945:-:2:99462495:99464985 | ENSG00000135945 | MSTRG.18938.7 | - | 2 | 99462496 | 99464985 | 22 | UGGAUACACAGAAGCUCCACCA | bsj |
| ENSG00000135945:-:2:99462495:99464985 | ENSG00000135945 | MSTRG.18938.7 | - | 2 | 99464976 | 99465185 | 210 | GUAGGAGGGUGUUUUAUAGACAAAUUUCACUUGUAAAGCUGGAGAAUGGAGAACUUCAGAAAAAGUUUACUUAAUAUUGUAUACUUUCAUCAGUUGGACAUUUGAAUUUAAUUUCUCAUUUUCUUGAUAUUGAAAUAAAAUAUCAUUUAGAAAUACAUUAUGUUAUAAAAUUGACAUUUUUUUUUUCCUCCCCAAUACAGAAGCUCCACC | ie_up |
| ENSG00000135945:-:2:99462495:99464985 | ENSG00000135945 | MSTRG.18938.7 | - | 2 | 99462296 | 99462505 | 210 | GGAUACACAGGUUGAGUACUUUUUACUUAACCCUAUUUUGGCAUGUAUUUUUAUUAGGAUUGAGAAUGAUUUGUUUUAAAAUUCUAUUUUUACUCAUUUAUUAUAGACAAAUGAUUGUAAGAUGAGAAGAAAUAAAUCAUCUGCUUAGAUACUUCUUUUUCCUUUCCAUGUUGCUUUUACCUGCCAUUGUCUUUAACUUUUAUCAAAGUA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| NONO | 3 | 1498 | 0.02094241 | 0.002172357 | 3.269094 | AGGAAC,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| G3BP2 | 3 | 1644 | 0.02094241 | 0.002383941 | 3.135007 | AGGAUG,GGAUGG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| HNRNPM | 1 | 999 | 0.01047120 | 0.001449204 | 2.853095 | GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| PABPC5 | 3 | 2400 | 0.02094241 | 0.003479539 | 2.589459 | AGAAAU,GAAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| HNRNPA3 | 2 | 2140 | 0.01570681 | 0.003102746 | 2.339773 | CCAAGG,GCCAAG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| ESRP2 | 2 | 2150 | 0.01570681 | 0.003117238 | 2.333050 | GGGAAA,UGGGAA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| LIN28A | 5 | 4315 | 0.03141361 | 0.006254764 | 2.328362 | GGAGGA,UGGAGG,UGGAGU | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| HNRNPF | 13 | 10561 | 0.07329843 | 0.015306492 | 2.259639 | AGGAAG,AGGCGA,AUGGGA,AUGGGG,GAGGAA,GAUGGG,GGAGGA,GGAUGG,UGGGAA,UGGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| A1CF | 1 | 1642 | 0.01047120 | 0.002381042 | 2.136762 | GAUCAG | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| HNRNPC | 3 | 3471 | 0.02094241 | 0.005031636 | 2.057328 | AUUUUU,GGAUAC,UUUUUA | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| MSI1 | 2 | 2770 | 0.01570681 | 0.004015744 | 1.967651 | AGGAAG,AGGUGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| SRSF4 | 3 | 3740 | 0.02094241 | 0.005421472 | 1.949671 | AGGAAG,GAGGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| CELF2 | 1 | 1886 | 0.01047120 | 0.002734648 | 1.937000 | UAUGUU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| PUM2 | 1 | 1890 | 0.01047120 | 0.002740445 | 1.933945 | GUAUAU | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| HNRNPCL1 | 1 | 2062 | 0.01047120 | 0.002989708 | 1.808351 | AUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| SRSF9 | 17 | 20254 | 0.09424084 | 0.029353626 | 1.682814 | AGGAAC,GAAGGA,GAUGGA,GAUGGC,GGAACA,GGAAGC,GGAGGA,GGAUGG,GGGUGG,GGUGGA,UGAAAA,UGAUGG,UGGAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| CPEB2 | 1 | 2261 | 0.01047120 | 0.003278099 | 1.675496 | AUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| PUM1 | 4 | 5823 | 0.02617801 | 0.008440164 | 1.633013 | CCAGAA,GUAUAU,GUCCAG,UUAAUG | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| RBMX | 3 | 4925 | 0.02094241 | 0.007138779 | 1.552678 | AGAAGG,AGGAAG,GAAGGA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| SF1 | 3 | 4931 | 0.02094241 | 0.007147474 | 1.550922 | CACAGA,GCUGCC,UGCUGC | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| HNRNPH1 | 7 | 10717 | 0.04188482 | 0.015532568 | 1.431131 | AGGAAG,AGGCGA,GAGGAA,GGAGGA,UGGGGU | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| YTHDC1 | 3 | 5576 | 0.02094241 | 0.008082210 | 1.373606 | GGAUAC,GGCUGC,UGCUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| QKI | 1 | 2805 | 0.01047120 | 0.004066466 | 1.364580 | AUCUAC | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| HNRNPA2B1 | 5 | 8607 | 0.03141361 | 0.012474748 | 1.332379 | AGAAGC,AGGAAC,CCAAGG,GAAGGA,GCCAAG | AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA |
| SRSF5 | 5 | 8869 | 0.03141361 | 0.012854439 | 1.289123 | AGGAAG,CACAGA,GAGGAA,UGCAGA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| SRSF3 | 10 | 16536 | 0.05759162 | 0.023965486 | 1.264901 | ACUUCA,CCACCA,CUACAA,CUUCAU,GACUUC,UACAAU,UCAUCU,UCGAUC,UUCAUC,UUCGAU | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| RBM46 | 2 | 4554 | 0.01570681 | 0.006601124 | 1.250606 | AAUGAU,AUGAUG | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| FMR1 | 12 | 20291 | 0.06806283 | 0.029407247 | 1.210695 | AAGGAU,AGGAAG,AGGAUG,AUGGAG,GAAGGA,GCUAUG,GCUGGG,GGCUGG,UAGUGG,UGGAGU,UGGCUG | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| SFPQ | 14 | 24050 | 0.07853403 | 0.034854804 | 1.171960 | AGGAAC,CUGGGA,GAAGGA,GAGGAA,GGAGGA,UAAUGG,UAGUGG,UGAUGG,UGGAGG,UUAAUG,UUAGUG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| TRA2A | 3 | 6871 | 0.02094241 | 0.009958930 | 1.072365 | AGGAAG,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SF1 | 1 | 24 | 0.09090909 | 0.001637412 | 5.794936 | CACAGA | ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC |
| SRSF5 | 1 | 44 | 0.09090909 | 0.002947341 | 4.946939 | CACAGA | AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC |
| HNRNPA2B1 | 1 | 49 | 0.09090909 | 0.003274823 | 4.794936 | AGAAGC | AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG |
| SRSF1 | 3 | 625 | 0.18181818 | 0.041000786 | 2.148773 | ACAGAA,CACAGA,GAAGCU | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.031438302 | 1.531901 | AGAAGC | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| TUT1 | 4 | 230 | 0.011904762 | 0.0011638452 | 3.354568 | AAAUAC,AGAUAC,CAAUAC,GAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| RBM41 | 8 | 502 | 0.021428571 | 0.0025342604 | 3.079899 | AUACAU,AUACUU,UACAUU,UACUUU,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| HNRNPAB | 4 | 351 | 0.011904762 | 0.0017734784 | 2.746885 | AGACAA,GACAAA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| EIF4B | 2 | 226 | 0.007142857 | 0.0011436921 | 2.642803 | GUUGGA,UUGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| PABPN1 | 1 | 178 | 0.004761905 | 0.0009018541 | 2.400573 | AGAAGA | AAAAGA,AGAAGA |
| HNRNPA0 | 1 | 200 | 0.004761905 | 0.0010126965 | 2.233337 | AAUUUA | AAUUUA,AGAUAU,AGUAGG |
| KHDRBS2 | 9 | 1051 | 0.023809524 | 0.0053002821 | 2.167398 | AAUAAA,AUAAAA,UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| U2AF2 | 9 | 1071 | 0.023809524 | 0.0054010480 | 2.140228 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| ENOX1 | 6 | 756 | 0.016666667 | 0.0038139863 | 2.127594 | AAUACA,AUACAG,UAGACA,UGGACA | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| CPEB2 | 12 | 1487 | 0.030952381 | 0.0074969770 | 2.045670 | AUUUUU,CAUUUU,CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| ERI1 | 1 | 228 | 0.004761905 | 0.0011537686 | 2.045185 | UUCAGA | UUCAGA,UUUCAG |
| CPEB4 | 5 | 691 | 0.014285714 | 0.0034864974 | 2.034723 | UUUUUU | UUUUUU |
| DDX19B | 5 | 691 | 0.014285714 | 0.0034864974 | 2.034723 | UUUUUU | UUUUUU |
| EIF4A3 | 5 | 691 | 0.014285714 | 0.0034864974 | 2.034723 | UUUUUU | UUUUUU |
| HNRNPC | 16 | 2006 | 0.040476190 | 0.0101118501 | 2.001027 | AUUUUU,CUUUUU,GGAUAC,UUUUUA,UUUUUC,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPCL1 | 10 | 1381 | 0.026190476 | 0.0069629182 | 1.911278 | AUUUUU,CUUUUU,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| RBM46 | 7 | 1091 | 0.019047619 | 0.0055018138 | 1.791631 | AAUCAU,AAUGAU,AUCAAA,AUCAUU,AUGAUU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| KHDRBS3 | 11 | 1646 | 0.028571429 | 0.0082980653 | 1.783726 | AAAUAA,AAUAAA,AUAAAA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| RALY | 7 | 1117 | 0.019047619 | 0.0056328094 | 1.757684 | UUUUUC,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| RBFOX1 | 1 | 287 | 0.004761905 | 0.0014510278 | 1.714464 | GCAUGU | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| FXR2 | 4 | 730 | 0.011904762 | 0.0036829907 | 1.692589 | AGACAA,GACAAA | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| ELAVL2 | 66 | 9826 | 0.159523810 | 0.0495112858 | 1.687942 | AAUUUA,AUACUU,AUUUAA,AUUUAG,AUUUAU,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUAA,CUUUUA,CUUUUU,GUUUUA,UAAUUU,UACUUU,UAUACU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUU,UCAUUU,UCUUUU,UGAUUU,UGUAUU,UUAAUU,UUACUU,UUAUGU,UUCUUU,UUGUAU,UUUAAU,UUUACU,UUUAUA,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PABPC5 | 3 | 596 | 0.009523810 | 0.0030078597 | 1.662801 | AGAAAA,AGAAAU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| KHDRBS1 | 12 | 1945 | 0.030952381 | 0.0098045143 | 1.658532 | AUAAAA,AUUUAA,UUAAAA,UUUUAC,UUUUUU | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| LIN28A | 5 | 900 | 0.014285714 | 0.0045395002 | 1.653968 | GGAGAA,GGAGGG,UGGAGA | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| TIA1 | 33 | 5140 | 0.080952381 | 0.0259018541 | 1.644018 | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUUUUA,CUUUUU,GUUUUA,UAUUUU,UCCUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| ELAVL4 | 18 | 2916 | 0.045238095 | 0.0146966949 | 1.622046 | AUUUAU,UAUUUU,UUGUAU,UUUAUU,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| ELAVL3 | 11 | 1928 | 0.028571429 | 0.0097188634 | 1.555714 | AUUUAU,UAUUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| G3BP2 | 2 | 490 | 0.007142857 | 0.0024738009 | 1.529772 | AGGAUU,GGAUUG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| ZCRB1 | 3 | 666 | 0.009523810 | 0.0033605401 | 1.502846 | ACUUAA,AUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| SSB | 2 | 505 | 0.007142857 | 0.0025493753 | 1.486358 | UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| PPIE | 53 | 9262 | 0.128571429 | 0.0466696896 | 1.462012 | AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUU,AAUAAA,AAUAUU,AAUUUA,AUAAAA,AUAAAU,AUUAUA,AUUUAA,AUUUAU,AUUUUU,UAAAAU,UAAUAU,UAAUUU,UAUAAA,UAUUAU,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUAA,UUAUUA,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| SYNCRIP | 5 | 1041 | 0.014285714 | 0.0052498992 | 1.444212 | UUUUUU | AAAAAA,UUUUUU |
| TIAL1 | 31 | 5597 | 0.076190476 | 0.0282043531 | 1.433693 | AAAUUU,AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUU,UAUUUU,UCAGUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPL | 7 | 1419 | 0.019047619 | 0.0071543732 | 1.412713 | AAAUAA,AAAUAC,AAUAAA,AAUACA | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| SRSF4 | 2 | 558 | 0.007142857 | 0.0028164047 | 1.342647 | AGAAGA,GAAGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| RBMS3 | 2 | 562 | 0.007142857 | 0.0028365578 | 1.332360 | UAUAGA | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| HNRNPU | 5 | 1136 | 0.014285714 | 0.0057285369 | 1.318335 | UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| PUM2 | 3 | 764 | 0.009523810 | 0.0038542926 | 1.305073 | UAGAUA,UGUAAA,UGUAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| ZFP36L2 | 3 | 774 | 0.009523810 | 0.0039046755 | 1.286336 | AUUUAU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| ELAVL1 | 16 | 3309 | 0.040476190 | 0.0166767432 | 1.279236 | AUUUAU,UAUUUU,UGAUUU,UGUUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| A1CF | 2 | 598 | 0.007142857 | 0.0030179363 | 1.242939 | AUCAGU,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| NOVA1 | 6 | 1428 | 0.016666667 | 0.0071997179 | 1.210953 | AUCAUC,UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| NOVA2 | 6 | 1434 | 0.016666667 | 0.0072299476 | 1.204908 | AUCAUC,UUUUUU | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| PTBP1 | 36 | 8003 | 0.088095238 | 0.0403264813 | 1.127337 | ACUUUC,ACUUUU,AUUUUC,AUUUUU,CCUUUC,CUCCCC,CUUCUU,CUUUCC,CUUUUU,GUCUUU,UACUUU,UAUUUU,UCUUUU,UUACUU,UUCCUU,UUCUUG,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU | ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU |
| PUM1 | 9 | 2172 | 0.023809524 | 0.0109482064 | 1.120844 | AAUAUU,AUUGUA,CUUGUA,UAAUAU,UAGAUA,UGUAAA,UGUAUA,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| SRSF7 | 12 | 2893 | 0.030952381 | 0.0145808142 | 1.085979 | AAUGAU,AGAAGA,AUAGAC,AUUGAC,GAAGAA,GAAUGA,GACAAA,GAUUGA,UGGACA | AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA |
| IGF2BP3 | 5 | 1348 | 0.014285714 | 0.0067966546 | 1.071676 | AAAUAC,AAAUCA,AAAUUC,AAUACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| QKI | 3 | 904 | 0.009523810 | 0.0045596534 | 1.062615 | AAUCAU,ACUCAU,UACUCA | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| PABPC4 | 1 | 462 | 0.004761905 | 0.0023327287 | 1.029520 | AAAAAG | AAAAAA,AAAAAG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.