circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000234545:-:7:92575770:92579395
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000234545:-:7:92575770:92579395 | ENSG00000234545 | ENST00000438306 | - | 7 | 92575771 | 92579395 | 394 | GGAAGAAGUAAAAGAGCAACUAGAAAAGAAAAAGAAAGGCUCCAAGGCUUUGGCUGAAUUUGAAGAAAAAAUGAAUGAGAACUGGAAGAAAGAACUGGAAAAACACAGGGAGAAAUUGUUAAGUGGAAGUGAGAGCUCAUCCAAAAAAAGACAGAGAAAGAAAAAAGAAAAGAAGAAAUCUGGUAGGUAUUCAUCUUCUUCUUCAUCAAGCUCUGAUUCUUCCAGCAGUUCUUCUGAUUCUGAAGAUGAGGAUAAGAAACAAGGAAAACGGAGAAAGAAAAAGAAGAACCGUUCACAUAAAUCUUCUGAAAGCUCCAUGUCAGAAACUGAAUCAGACAGUAAGGAUAGUUUAAAAAAGAAAAAGAAGUCAAAAGAUGGAACUGAGAAAGAAAAGGGAAGAAGUAAAAGAGCAACUAGAAAAGAAAAAGAAAGGCUCCAAGGCUU | circ |
| ENSG00000234545:-:7:92575770:92579395 | ENSG00000234545 | ENST00000438306 | - | 7 | 92575771 | 92579395 | 22 | AGAAAGAAAAGGGAAGAAGUAA | bsj |
| ENSG00000234545:-:7:92575770:92579395 | ENSG00000234545 | ENST00000438306 | - | 7 | 92579386 | 92579595 | 210 | GAGUGAUUAGUGUUAUUUAUUUAGCUUUAUUAUGGUAAUUUAUUUUUAUAAACGUGAACAAAGAAAUUGAAAUGUUACCAACAUUGAAUAGAAGUCUAUUAGAAUAUUUAGAAGAGUUUAUGAAAUUUUGUUGUCUUAUUUGUAAGCAUUUAUCUAAUUUGAAUUGCUUGAAAUUUUGUUUGUACAUUCUAUUUUUUAAGGGAAGAAGUA | ie_up |
| ENSG00000234545:-:7:92575770:92579395 | ENSG00000234545 | ENST00000438306 | - | 7 | 92575571 | 92575780 | 210 | GAAAGAAAAGGUAACUAUACUUUUACAUUGCCUUAAGAUAGUCUGUCAUAUAAUACUUAAUUGACUUAAAUAACAAUAAUGUGUAUCUCUUUUUAAGAGAUAUAUUUAUUUUGUUUUUGUAAUAUUUUGUUUCAAUUUAAAGCAAUUUUUAAUUUGGAUUCAUUAUUGAAGAUAAAGGAUCAAAAGAGUAUUCUAGGCCAAGAGUUUGAA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| PABPN1 | 13 | 1222 | 0.035532995 | 0.0017723764 | 4.325402 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| PABPC4 | 11 | 1251 | 0.030456853 | 0.0018144033 | 4.069200 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| SART3 | 21 | 2634 | 0.055837563 | 0.0038186524 | 3.870100 | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| IGHMBP2 | 5 | 813 | 0.015228426 | 0.0011796520 | 3.690334 | AAAAAA | AAAAAA |
| SRSF11 | 4 | 688 | 0.012690355 | 0.0009985015 | 3.667824 | AAGAAG | AAGAAG |
| PABPC5 | 16 | 2400 | 0.043147208 | 0.0034795387 | 3.632299 | AGAAAA,AGAAAG,AGAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| CNOT4 | 1 | 314 | 0.005076142 | 0.0004564992 | 3.475048 | GACAGA | GACAGA |
| TRA2A | 42 | 6871 | 0.109137056 | 0.0099589296 | 3.454007 | AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,GAAAGA,GAAGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| PABPC1 | 21 | 4443 | 0.055837563 | 0.0064402624 | 3.116045 | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| TRA2B | 32 | 7329 | 0.083756345 | 0.0106226650 | 2.979053 | AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGA,AGGAAA,AUAAGA,GAAAGA,GAAGAA,UAAGAA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| MATR3 | 2 | 739 | 0.007614213 | 0.0010724109 | 2.827837 | AAUCUU,CAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| SRSF10 | 54 | 13860 | 0.139593909 | 0.0200874160 | 2.796872 | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGGAA,AAGGGA,AGAGAA,GAAAGA,GAGAAA,GAGAAC,GAGAGC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF4 | 13 | 3740 | 0.035532995 | 0.0054214720 | 2.712403 | AAGAAG,AGAAGA,GAAGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| SYNCRIP | 5 | 1634 | 0.015228426 | 0.0023694485 | 2.684144 | AAAAAA | AAAAAA,UUUUUU |
| AGO2 | 5 | 1830 | 0.015228426 | 0.0026534924 | 2.520803 | AAAAAA | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| PABPC3 | 3 | 1234 | 0.010152284 | 0.0017897669 | 2.503961 | AAAAAC,AAAACA,GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| HNRNPU | 5 | 1965 | 0.015228426 | 0.0028491350 | 2.418171 | AAAAAA | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| G3BP2 | 4 | 1644 | 0.012690355 | 0.0023839405 | 2.412312 | AGGAUA,GGAUAA,GGAUAG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| RBM6 | 2 | 1054 | 0.007614213 | 0.0015289102 | 2.316191 | AUCCAA,CAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| ZFP36 | 69 | 28400 | 0.177664975 | 0.0411588414 | 2.109885 | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGG,AAACAA,AAAGAA,AACAAG,AAGAAA,AAGGAA,AAGUAA,ACAAGG,AGAAAG,AGGAAA,AGUAAA,AUAAAU,CAAGGA,UAAGGA,UCUUCC,UCUUCU,UUUAAA | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU |
| DAZAP1 | 13 | 5964 | 0.035532995 | 0.0086445016 | 2.039305 | AAAAAA,AGGAAA,AGGAUA,AGUAAA,AGUAAG,AGUUUA,UAGGUA,UAGUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| HNRNPD | 5 | 2837 | 0.015228426 | 0.0041128408 | 1.888560 | AAAAAA | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| RBM5 | 13 | 6879 | 0.035532995 | 0.0099705232 | 1.833418 | AAAAAA,AAGGAA,AGGGAA,AGGGAG,CAAGGA,UCUUCU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| HNRNPM | 1 | 999 | 0.005076142 | 0.0014492040 | 1.808472 | AAGGAA | AAGGAA,GAAGGA,GGGGGG |
| SRSF5 | 14 | 8869 | 0.038071066 | 0.0128544391 | 1.566428 | AAGAAG,AGAAGA,CACAUA,GAAGAA,GGAAGA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| HNRNPAB | 2 | 1782 | 0.007614213 | 0.0025839306 | 1.559128 | AAAGAC,AAGACA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| RC3H1 | 2 | 1786 | 0.007614213 | 0.0025897275 | 1.555895 | CUUCUG | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| FUS | 5 | 3648 | 0.015228426 | 0.0052881452 | 1.525933 | AAAAAA | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| RBMX | 7 | 4925 | 0.020304569 | 0.0071387787 | 1.508055 | AAGAAG,AAGGAA,AAGUAA,UCAAAA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| SNRNP70 | 1 | 1237 | 0.005076142 | 0.0017941145 | 1.500461 | AUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| ENOX1 | 4 | 3195 | 0.012690355 | 0.0046316558 | 1.454133 | AAGACA,AGACAG,CAGACA | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| HNRNPA3 | 2 | 2140 | 0.007614213 | 0.0031027457 | 1.295150 | CAAGGA,CCAAGG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| RBM3 | 2 | 2152 | 0.007614213 | 0.0031201361 | 1.287086 | AAAACG,GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| SRSF7 | 18 | 14481 | 0.048223350 | 0.0209873716 | 1.200210 | AAGAAG,ACUAGA,AGAAGA,AGAGAA,CAGAGA,CUGAGA,GAAGAA,GAAUGA,UCUUCA,UGAGAG | AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA |
| SRSF3 | 20 | 16536 | 0.053299492 | 0.0239654858 | 1.153164 | AUCUUC,AUUCAU,CAGAGA,CAUCAA,CUCCAA,CUUCAU,CUUCUU,UCAUCA,UCAUCC,UCAUCU,UCUUCA,UCUUCC,UUCAUC,UUCUUC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| ZCRB1 | 1 | 1605 | 0.005076142 | 0.0023274215 | 1.125000 | GUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| KHDRBS1 | 4 | 4064 | 0.012690355 | 0.0058910141 | 1.107145 | GAAAAC,UAAAAA,UAAAAG,UUAAAA | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| HNRNPL | 5 | 5085 | 0.015228426 | 0.0073706513 | 1.046903 | AAACAA,AAACAC,AACACA,ACAUAA,CAUAAA | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| ELAVL4 | 5 | 5105 | 0.015228426 | 0.0073996354 | 1.041241 | AAAAAA | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| FXR2 | 3 | 3434 | 0.010152284 | 0.0049780156 | 1.028162 | AGACAG,GACAGA | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ESRP2 | 1 | 14 | 0.09090909 | 0.0009824469 | 6.531901 | GGGAAG | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA |
| HNRNPH3 | 3 | 61 | 0.18181818 | 0.0040607807 | 5.484596 | AAGGGA,AGGGAA,GGGAAG | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| HNRNPH2 | 3 | 80 | 0.18181818 | 0.0053052135 | 5.098942 | AAGGGA,AGGGAA,GGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPF | 3 | 90 | 0.18181818 | 0.0059601782 | 4.930997 | AAGGGA,AGGGAA,GGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 3 | 90 | 0.18181818 | 0.0059601782 | 4.930997 | AAGGGA,AGGGAA,GGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| ZRANB2 | 1 | 45 | 0.09090909 | 0.0030128373 | 4.915230 | AGGGAA | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA |
| RBM5 | 1 | 56 | 0.09090909 | 0.0037332984 | 4.605902 | AGGGAA | AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU |
| SRSF10 | 2 | 160 | 0.13636364 | 0.0105449306 | 3.692837 | AAAGGG,AAGGGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| FMR1 | 1 | 117 | 0.09090909 | 0.0077285827 | 3.556149 | AAGGGA | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| ZFP36 | 1 | 126 | 0.09090909 | 0.0083180508 | 3.450107 | AAAAGG | AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG |
| SFPQ | 1 | 153 | 0.09090909 | 0.0100864553 | 3.172005 | AAGGGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SRSF11 | 1 | 82 | 0.004761905 | 0.0004181782 | 3.509349 | AAGAAG | AAGAAG |
| ZFP36L2 | 17 | 774 | 0.042857143 | 0.0039046755 | 3.456261 | AUUUAU,UAUUUA,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| HNRNPA0 | 3 | 200 | 0.009523810 | 0.0010126965 | 3.233337 | AAUUUA,AGAUAU | AAUUUA,AGAUAU,AGUAGG |
| PABPN1 | 2 | 178 | 0.007142857 | 0.0009018541 | 2.985535 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| HNRNPD | 20 | 1488 | 0.050000000 | 0.0075020153 | 2.736578 | AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAUUU,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| RBM41 | 6 | 502 | 0.016666667 | 0.0025342604 | 2.717329 | AUACUU,UACAUU,UACUUU,UUACAU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| ELAVL4 | 35 | 2916 | 0.085714286 | 0.0146966949 | 2.544044 | AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| ELAVL3 | 22 | 1928 | 0.054761905 | 0.0097188634 | 2.494313 | AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| PABPC5 | 5 | 596 | 0.014285714 | 0.0030078597 | 2.247764 | AGAAAA,AGAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| ELAVL1 | 31 | 3309 | 0.076190476 | 0.0166767432 | 2.191773 | AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| RBMS1 | 1 | 217 | 0.004761905 | 0.0010983474 | 2.116204 | GAUAUA | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| AKAP1 | 1 | 221 | 0.004761905 | 0.0011185006 | 2.089973 | AUAUAU | AUAUAU,UAUAUA |
| SRSF4 | 4 | 558 | 0.011904762 | 0.0028164047 | 2.079612 | AAGAAG,AGAAGA,GAAGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| TRA2A | 9 | 1133 | 0.023809524 | 0.0057134220 | 2.059112 | AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAAGA,GAAGAA,GAAGAG | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| TUT1 | 1 | 230 | 0.004761905 | 0.0011638452 | 2.032640 | AAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| HNRNPAB | 2 | 351 | 0.007142857 | 0.0017734784 | 2.009919 | ACAAAG,CAAAGA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| ELAVL2 | 77 | 9826 | 0.185714286 | 0.0495112858 | 1.907255 | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAG,AUUUAU,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUU,UAAUUU,UACUUU,UAUACU,UAUAUU,UAUUAU,UAUUGA,UAUUUA,UAUUUG,UAUUUU,UCUUAU,UCUUUU,UUAAUU,UUAUUG,UUAUUU,UUCAUU,UUUAAG,UUUAAU,UUUAUA,UUUAUG,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | GAUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| PPIE | 69 | 9262 | 0.166666667 | 0.0466696896 | 1.836408 | AAAUAA,AAAUUU,AAUAAU,AAUAUU,AAUUUA,AAUUUU,AUAAUA,AUAUAA,AUAUAU,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUU,UAAAUA,UAAUAU,UAAUUU,UAUAAA,UAUAAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAAAU,UUAAUU,UUAUAA,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| ZCRB1 | 4 | 666 | 0.011904762 | 0.0033605401 | 1.824774 | ACUUAA,AUUUAA,GACUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| TIAL1 | 40 | 5597 | 0.097619048 | 0.0282043531 | 1.791245 | AAAUUU,AAUUUU,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| TIA1 | 35 | 5140 | 0.085714286 | 0.0259018541 | 1.726480 | AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUGU,UUUUUA,UUUUUG,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PUM1 | 14 | 2172 | 0.035714286 | 0.0109482064 | 1.705807 | AAUAUU,AAUGUU,AGAUAA,GAAUUG,GUAAUA,GUACAU,UAAAUA,UAAUAU,UAAUGU,UGUAAU,UGUACA,UUGUAC,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| A1CF | 3 | 598 | 0.009523810 | 0.0030179363 | 1.657976 | UAAUUG,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| HNRNPC | 11 | 2006 | 0.028571429 | 0.0101118501 | 1.498526 | AUUUUU,CUUUUU,GGAUUC,UUUUUA,UUUUUG,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| KHSRP | 32 | 5764 | 0.078571429 | 0.0290457477 | 1.435678 | AUAUUU,AUGUGU,AUUAUU,AUUUAU,GUGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UGUGUA,UUAUUA,UUAUUU,UUUAUA,UUUAUU | ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | GCCAAG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| RBMS3 | 2 | 562 | 0.007142857 | 0.0028365578 | 1.332360 | AUAUAU,CAUAUA | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| PUM2 | 3 | 764 | 0.009523810 | 0.0038542926 | 1.305073 | GUACAU,UAAAUA,UGUACA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| HNRNPCL1 | 6 | 1381 | 0.016666667 | 0.0069629182 | 1.259202 | AUUUUU,CUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| KHDRBS3 | 7 | 1646 | 0.019047619 | 0.0082980653 | 1.198764 | AAAUAA,AGAUAA,AUAAAC,AUAAAG,GAUAAA,UAAAUA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| TRA2B | 6 | 1447 | 0.016666667 | 0.0072954454 | 1.191898 | AAAGAA,AAGAAG,AGAAGA,GAAAGA,GAAGAA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| SRSF10 | 13 | 2937 | 0.033333333 | 0.0148024990 | 1.171125 | AAAAGA,AAAGAA,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGAGA,AAGGGA,ACAAAG,CAAAGA,GAAAGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| RBMX | 5 | 1316 | 0.014285714 | 0.0066354293 | 1.106311 | AAGAAG,AGUGUU,AUCAAA,UAACAA,UCAAAA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| CELF2 | 3 | 881 | 0.009523810 | 0.0044437727 | 1.099754 | AUGUGU,GUCUGU,UGUUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| SRSF5 | 6 | 1578 | 0.016666667 | 0.0079554615 | 1.066948 | AAGAAG,AGAAGA,AUAAAG,GAAGAA,GGAAGA,UAAAGG | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| HNRNPA2B1 | 8 | 2033 | 0.021428571 | 0.0102478839 | 1.064210 | AAGAAG,AAUUUA,AGAUAU,AUUUAA,CCAAGA,GCCAAG,UUUAUA | AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA |
| QKI | 3 | 904 | 0.009523810 | 0.0045596534 | 1.062615 | AUCUAA,UCAUAU,UCUAAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| HNRNPA1 | 27 | 6340 | 0.066666667 | 0.0319478033 | 1.061249 | AAAGAG,AAUUUA,AGAUAU,AUAGAA,AUUAGA,AUUUAA,AUUUAU,CAAAGA,GACUUA,GAUUAG,GCCAAG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| ZRANB2 | 5 | 1360 | 0.014285714 | 0.0068571141 | 1.058900 | AAAGGU,AGGGAA,AGGUAA,UAAAGG,UGGUAA | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| ZFP36 | 40 | 9408 | 0.097619048 | 0.0474052801 | 1.042115 | AAAAGA,AAAAGG,AAAGAA,AAAGCA,AAAGGA,AAAUAA,AACAAA,AAGAAA,AAGCAA,ACAAAG,ACUUUU,AUAAAC,AUAAAG,AUUUAA,AUUUAU,CAAAGA,UAAAUA,UAAGCA,UAUUUA,UCUUUU,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.