ENSG00000197157:+:7:127887901:127929329

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000197157:+:7:127887901:127929329 ENSG00000197157 ENST00000354725 + 7 127887902 127929329 326 AAACAUUGCUGAGGCUCUUGUCAGCAAAGGUCUAGCCACAGUGAUCAGAUACCGGCAGGAUGAUGACCAGAGAUCAUCACACUACGAUGAACUGCUUGCUGCAGAGGCCAGAGCUAUUAAGAAUGGCAAAGGAUUGCAUAGCAAGAAGGAAGUGCCUAUCCACCGUGUUGCAGAUAUAUCUGGGGAUACCCAAAAAGCAAAGCAGUUCCUGCCUUUUCUUCAGCGGGCAGGUCGUUCUGAAGCUGUGGUGGAAUACGUCUUCAGUGGUUCUCGUCUCAAACUCUAUUUGCCAAAGGAAACUUGCCUUAUCACCUUCUUGCUUGCAGAAACAUUGCUGAGGCUCUUGUCAGCAAAGGUCUAGCCACAGUGAUCAGAU circ
ENSG00000197157:+:7:127887901:127929329 ENSG00000197157 ENST00000354725 + 7 127887902 127929329 22 CUUGCUUGCAGAAACAUUGCUG bsj
ENSG00000197157:+:7:127887901:127929329 ENSG00000197157 ENST00000354725 + 7 127887702 127887911 210 AAAAAUGCUGAGCUAGGGAACUUUGUUAUUUAACCUUUUAUUUGGAUUUCUAGCUUAGCAACUCAUAGGUCUUGAAACCUUGGCUUCUCUCUCCCUCUGCCAGAAUGCGUUAAGACCUCCAGGUGCUAACUGUUAUUAUUUCUGUUGACUGAGCCCCAUAUGCACUUCUAGUGCUCACUGACCUAUCUUUUCUGUUGCAGAAACAUUGCU ie_up
ENSG00000197157:+:7:127887901:127929329 ENSG00000197157 ENST00000354725 + 7 127929320 127929529 210 UUGCUUGCAGGUAAGUCUUAUGUGUUACAUGUUACUCUGAGCUCAGAAGUCAUCCCUGGAAACCACAUACCCUCCUUUCCCCCUGUGUUCUAGAUAGGCCCUAGAGCCCACCAGCAUGCUCUUCCUCUCUGGUUGGGAUAUGCAAACACAGUUUCUAGAUUGGAUCCUCCUGUGCCUGCAGACCCAGCACUGCACCCCCUUUCUGCUCCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 268 0.006134969 0.0003898359 3.976117 CGGGCA AUCGGG,CGGGCA,UCGGGC
RBM42 1 407 0.006134969 0.0005912752 3.375154 ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
AKAP1 1 426 0.006134969 0.0006188101 3.309488 AUAUAU AUAUAU,UAUAUA
HNRNPA0 1 453 0.006134969 0.0006579386 3.221031 AGAUAU AAUUUA,AGAUAU,AGUAGG
SNRPB2 3 991 0.012269939 0.0014376103 3.093383 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 1 497 0.006134969 0.0007217036 3.087578 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPM 3 999 0.012269939 0.0014492040 3.081795 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
G3BP2 4 1644 0.015337423 0.0023839405 2.685636 AGGAUG,AGGAUU,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TUT1 1 678 0.006134969 0.0009840095 2.640312 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 1 688 0.006134969 0.0009985015 2.619220 AAGAAG AAGAAG
ACO1 2 1283 0.009202454 0.0018607779 2.306113 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 2 1283 0.009202454 0.0018607779 2.306113 AUAUAU,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM6 1 1054 0.006134969 0.0015289102 2.004552 UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
A1CF 2 1642 0.009202454 0.0023810421 1.950426 GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZNF638 2 1773 0.009202454 0.0025708878 1.839752 CGUUCU,GGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPC4 1 1251 0.006134969 0.0018144033 1.757561 AAAAAG AAAAAA,AAAAAG
ZRANB2 4 3173 0.015337423 0.0045997733 1.737421 AAAGGU,AGGUCU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBMX 6 4925 0.021472393 0.0071387787 1.588734 AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF5 1 1415 0.006134969 0.0020520728 1.579974 GUGUUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ESRP2 2 2150 0.009202454 0.0031172377 1.561750 GGGGAU,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM3 2 2152 0.009202454 0.0031201361 1.560410 AAUACG,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2B 9 7329 0.030674847 0.0106226650 1.529910 AAGAAG,AAGAAU,AAGGAA,AGAAGG,AGGAAA,AGGAAG,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
CELF6 3 2997 0.012269939 0.0043447134 1.497795 GUGGUG,GUGUUG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBM4 3 3065 0.012269939 0.0044432593 1.465438 CCUUCU,CUUCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
CELF4 1 1782 0.006134969 0.0025839306 1.247489 GUGUUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 1 1782 0.006134969 0.0025839306 1.247489 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RC3H1 1 1786 0.006134969 0.0025897275 1.244256 CCUUCU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBM46 4 4554 0.015337423 0.0066011240 1.216273 AUGAUG,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO2 1 1830 0.006134969 0.0026534924 1.209164 AAGUGC AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF3 17 16536 0.055214724 0.0239654858 1.204095 ACUACG,AGAGAU,AUCAUC,CACUAC,CAGAGA,CAUCAC,CUACGA,CUCGUC,CUUCAG,CUUCUU,UACGAU,UCAUCA,UCGUUC,UCUUCA,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
QKI 2 2805 0.009202454 0.0040664663 1.178243 ACACUA,CACACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CSTF2 1 1967 0.006134969 0.0028520334 1.105065 GUGUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
NOVA2 3 4013 0.012269939 0.0058171047 1.076755 AGAUCA,AUCACC,AUCAUC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
MBNL1 12 13372 0.039877301 0.0193802045 1.040984 CUGCCU,CUGCUU,CUUGCU,GCUUGC,UGCUGC,UUGCCA,UUGCCU,UUGCUG,UUGCUU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
SRSF7 13 14481 0.042944785 0.0209873716 1.032961 AAAGGA,AAGAAG,ACUACG,AGAGAU,AGAUCA,AGGAAG,CAGAGA,CUACGA,GAGAUC,UACGAU,UCUUCA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SNRPA 6 7380 0.021472393 0.0106965744 1.005334 AGCAGU,AUUGCA,GAUACC,UCCUGC,UUCCUG ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF5 1 44 0.09090909 0.002947341 4.946939 UGCAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF2 1 479 0.09090909 0.031438302 1.531901 UGCAGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 2 146 0.007142857 0.0007406288 3.269679 CUCUCU CUCUCU
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 AGCAUG,GCAUGC,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NELFE 9 1059 0.023809524 0.0053405885 2.156468 CUCUCU,CUCUGG,CUGGUU,GCUAAC,UCUCUC,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
HNRNPLL 6 748 0.016666667 0.0037736800 2.142922 ACAUAC,ACCACA,ACUGCA,CAAACA,CACUGC,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
YBX1 6 1321 0.016666667 0.0066606207 1.323237 AACCAC,ACCACA,CCACCA,CCAGCA,GCCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUGAC,CACUGA,GCUAAC,UGCUAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
CELF5 2 669 0.007142857 0.0033756550 1.081334 UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAACAC,AACACA,AACUCA,ACAUAC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUCAU,CUCAUA,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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