circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000136527:-:3:185923795:185931852
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000136527:-:3:185923795:185931852 | ENSG00000136527 | ENST00000487615 | - | 3 | 185923796 | 185931852 | 762 | GUUAAUGUUGAAGAAGGAAAAUGCGGAAGUCGUCAUUUGACAAGUUUUAUAAAUGAGUAUUUGAAGCUCAGGAAUAAGUGAAGCUGAAAUUUGAAAAAAUAAAAGAAAGAAUGCAUGCUAAUUAUCAGACCAGAAGUCCCACUUGUAGAAUAUUGAGCAAUUUGUGUGAAGUGGGGAAGAUGAAAGAAGUCAGAAUUUGAAACGGAAGAAUGAAGAAAAGAAAUAAAAAUGAAGUUAAGAUAAGAAGUAAUCUGGAAUCAGAAAGCACUACGCUAAGAAUCCCGUUCUGCUUCCAGAAGUGGAAGUGCUCACGGAUCGGGGAAAUCUGCAAGGCAUACCCCUGCAAGGUCUCGCUCCAAGGAAGAUUCCAGGCGUUCCAGAUCAAAGUCCAGGUCCCGAUCUGAAUCUAGGUCUAGAUCCAGAAGAAGCUCCCGAAGGCAUUAUACCCGGUCACGGUCUCGCUCCCGCUCCCAUAGACGAUCACGUAGCAGGUCUUACAGUCGAGAUUAUCGUAGACGGCACAGCCACAGCCAUUCUCCCAUGUCUACUCGCAGGCGUCAUGUUGGGAAUCGGGCAAAUCCUGAUCCUAACUGUUGUCUUGGAGUAUUUGGGCUGAGCUUGUACACCACAGAAAGAGAUCUAAGAGAAGUGUUCUCUAAAUAUGGUCCCAUUGCCGAUGUGUCUAUUGUAUAUGACCAGCAGUCUAGGCGUUCAAGAGGAUUUGCCUUUGUAUAUUUUGAAAAUGUAGAUGAUGCCAAGGAAGUUAAUGUUGAAGAAGGAAAAUGCGGAAGUCGUCAUUUGACAAGUUUUAU | circ |
| ENSG00000136527:-:3:185923795:185931852 | ENSG00000136527 | ENST00000487615 | - | 3 | 185923796 | 185931852 | 22 | AUGCCAAGGAAGUUAAUGUUGA | bsj |
| ENSG00000136527:-:3:185923795:185931852 | ENSG00000136527 | ENST00000487615 | - | 3 | 185931843 | 185932052 | 210 | GAGAAAUGAGAUUACCAUAUAUUCUAGAACCAGCAGAAAACUAUGUAGUUUUCAGUUUUUUGAGCUGCAUAUUCUAGUUUCUUUUUUUUUUUUUUUAAUCCAAAUCAACAAAGGGAUUUUUUUUUUCUAGUUUCAGUUUUGGCACUGGAUUUUAUCCUGGAGUUUUAAAAUAUUCUUCAUCCUGUUCUUUUUCUAUUAAGGUUAAUGUUG | ie_up |
| ENSG00000136527:-:3:185923795:185931852 | ENSG00000136527 | ENST00000487615 | - | 3 | 185923596 | 185923805 | 210 | UGCCAAGGAAGUAAGUAAAAGCCCGUUCCUUUGUAAACCAUCAGUUCUAUUGUUAACGCCAAGUUAUCAGUGACCAAUUGCUAGGAUAAGGACAAGGACAAGUCAGUAAUACUUCGAACUUUUUCUCCAACCUCUUGUGGAGACUCAAGAUACAUGCAGAAUAACAAAAUUUUGUAUAACUUGGGGAAGUUGGUCCUACCACCUGCUUUA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM25 | 4 | 268 | 0.006561680 | 0.0003898359 | 4.073126 | AUCGGG,CGGGCA,UCGGGC | AUCGGG,CGGGCA,UCGGGC |
| ANKHD1 | 2 | 339 | 0.003937008 | 0.0004927293 | 2.998232 | AGACGA,GACGAU | AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU |
| SRSF11 | 4 | 688 | 0.006561680 | 0.0009985015 | 2.716229 | AAGAAG | AAGAAG |
| PUM2 | 9 | 1890 | 0.013123360 | 0.0027404447 | 2.259655 | GUAGAU,GUAUAU,UAAAUA,UGUACA,UGUAGA,UGUAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| HNRNPM | 4 | 999 | 0.006561680 | 0.0014492040 | 2.178805 | AAGGAA,GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| RBM42 | 1 | 407 | 0.002624672 | 0.0005912752 | 2.150235 | ACUACG | AACUAA,AACUAC,ACUAAG,ACUACG |
| PUM1 | 25 | 5823 | 0.034120735 | 0.0084401638 | 2.015306 | AAUAUU,AAUGUU,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUGU,UGUACA,UGUAGA,UGUAUA,UUAAUG,UUGUAC,UUGUAG | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| RBFOX2 | 1 | 452 | 0.002624672 | 0.0006564894 | 1.999293 | UGCAUG | UGACUG,UGCAUG |
| TRA2B | 31 | 7329 | 0.041994751 | 0.0106226650 | 1.983063 | AAAGAA,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,UAAGAA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| SRSF4 | 14 | 3740 | 0.019685039 | 0.0054214720 | 1.860343 | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| TRA2A | 26 | 6871 | 0.035433071 | 0.0099589296 | 1.831034 | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| PABPC5 | 8 | 2400 | 0.011811024 | 0.0034795387 | 1.763166 | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| ESRP2 | 7 | 2150 | 0.010498688 | 0.0031172377 | 1.751869 | GGGAAA,GGGAAG,GGGAAU,GGGGAA,UGGGAA,UGGGGA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| RBM28 | 2 | 822 | 0.003937008 | 0.0011926949 | 1.722875 | UGUAGA | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| IGF2BP1 | 2 | 831 | 0.003937008 | 0.0012057377 | 1.707184 | AAGCAC,CCCGUU | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| PABPN1 | 3 | 1222 | 0.005249344 | 0.0017723764 | 1.566452 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| RBMX | 15 | 4925 | 0.020997375 | 0.0071387787 | 1.556460 | AAGAAG,AAGGAA,AAGUAA,AAGUGU,AGAAGG,AGGAAG,AGUGUU,AUCAAA,GAAGGA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| SNRNP70 | 3 | 1237 | 0.005249344 | 0.0017941145 | 1.548865 | GAUCAA,GUUCAA,UUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| ZNF638 | 4 | 1773 | 0.006561680 | 0.0025708878 | 1.351799 | CGUUCU,UGUUCU,UGUUGG,UGUUGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| HNRNPA3 | 5 | 2140 | 0.007874016 | 0.0031027457 | 1.343554 | CAAGGA,CCAAGG,GCCAAG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| RBFOX1 | 2 | 1077 | 0.003937008 | 0.0015622419 | 1.333482 | GCAUGC,UGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| KHDRBS2 | 4 | 1858 | 0.006561680 | 0.0026940701 | 1.284278 | AAUAAA,AUAAAA | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| CELF2 | 4 | 1886 | 0.006561680 | 0.0027346479 | 1.262710 | AUGUGU,UGUGUG,UGUUGU,UUGUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| KHDRBS3 | 8 | 3429 | 0.011811024 | 0.0049707696 | 1.248593 | AAAUAA,AAUAAA,AGAUAA,AUAAAA,UAAAUA | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| SRSF5 | 21 | 8869 | 0.028871391 | 0.0128544391 | 1.167374 | AAGAAG,AGAAGA,AGGAAG,CACAGA,CACAGC,CACGGA,CACGUA,CGCAGG,GAAGAA,GGAAGA,UGCGGA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| IGHMBP2 | 1 | 813 | 0.002624672 | 0.0011796520 | 1.153776 | AAAAAA | AAAAAA |
| RBM46 | 10 | 4554 | 0.014435696 | 0.0066011240 | 1.128857 | AAUGAA,AUCAAA,AUGAAA,AUGAAG,AUGAUG,GAUCAA,GAUGAA,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SRSF4 | 1 | 18 | 0.09090909 | 0.001244433 | 6.190864 | AGGAAG | AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| MSI1 | 1 | 23 | 0.09090909 | 0.001571915 | 5.853829 | AGGAAG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG |
| DAZAP1 | 2 | 36 | 0.13636364 | 0.002423369 | 5.814301 | AGGAAG,AGUUAA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA |
| RBMX | 1 | 34 | 0.09090909 | 0.002292376 | 5.309509 | AGGAAG | AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA |
| SRSF5 | 1 | 44 | 0.09090909 | 0.002947341 | 4.946939 | AGGAAG | AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC |
| TRA2B | 1 | 51 | 0.09090909 | 0.003405816 | 4.738352 | AGGAAG | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| TRA2A | 1 | 54 | 0.09090909 | 0.003602305 | 4.657432 | AGGAAG | AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SRSF6 | 1 | 68 | 0.09090909 | 0.004519256 | 4.330267 | AGGAAG | AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG |
| HNRNPF | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | AGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | AGGAAG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| FMR1 | 1 | 117 | 0.09090909 | 0.007728583 | 3.556149 | AGGAAG | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.007859576 | 3.531901 | AGGAAG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF7 | 1 | 128 | 0.09090909 | 0.008449044 | 3.427565 | AGGAAG | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF2 | 1 | 479 | 0.09090909 | 0.031438302 | 1.531901 | AGGAAG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 1 | 625 | 0.09090909 | 0.041000786 | 1.148773 | AGGAAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ESRP1 | 1 | 46 | 0.004761905 | 0.0002367997 | 4.329800 | AGGGAU | AGGGAU |
| CPEB4 | 16 | 691 | 0.040476190 | 0.0034864974 | 3.537223 | UUUUUU | UUUUUU |
| DDX19B | 16 | 691 | 0.040476190 | 0.0034864974 | 3.537223 | UUUUUU | UUUUUU |
| EIF4A3 | 16 | 691 | 0.040476190 | 0.0034864974 | 3.537223 | UUUUUU | UUUUUU |
| RALY | 20 | 1117 | 0.050000000 | 0.0056328094 | 3.150002 | UUUUUC,UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| U2AF2 | 19 | 1071 | 0.047619048 | 0.0054010480 | 3.140228 | UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| HNRNPA3 | 5 | 349 | 0.014285714 | 0.0017634019 | 3.018140 | CAAGGA,CCAAGG,GCCAAG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| SYNCRIP | 16 | 1041 | 0.040476190 | 0.0052498992 | 2.946712 | UUUUUU | AAAAAA,UUUUUU |
| KHDRBS2 | 16 | 1051 | 0.040476190 | 0.0053002821 | 2.932932 | UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| HNRNPCL1 | 21 | 1381 | 0.052380952 | 0.0069629182 | 2.911278 | AUUUUU,CUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| RBM6 | 2 | 191 | 0.007142857 | 0.0009673519 | 2.884389 | AAUCCA,AUCCAA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| HNRNPU | 16 | 1136 | 0.040476190 | 0.0057285369 | 2.820835 | UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| CPEB2 | 20 | 1487 | 0.050000000 | 0.0074969770 | 2.737547 | AUUUUU,CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| NOVA1 | 18 | 1428 | 0.045238095 | 0.0071997179 | 2.651526 | ACCACC,AUCAAC,UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| NOVA2 | 18 | 1434 | 0.045238095 | 0.0072299476 | 2.645481 | ACCACC,AUCAAC,UUUUUU | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| ERI1 | 2 | 228 | 0.007142857 | 0.0011537686 | 2.630147 | UUUCAG | UUCAGA,UUUCAG |
| TUT1 | 2 | 230 | 0.007142857 | 0.0011638452 | 2.617602 | AAUACU,AGAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| HNRNPC | 25 | 2006 | 0.061904762 | 0.0101118501 | 2.614003 | AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| IGF2BP1 | 1 | 173 | 0.004761905 | 0.0008766626 | 2.441445 | CCCGUU | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| KHDRBS1 | 20 | 1945 | 0.050000000 | 0.0098045143 | 2.350410 | CAAAAU,GAAAAC,UAAAAG,UUAAAA,UUUUUU | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| KHDRBS3 | 16 | 1646 | 0.040476190 | 0.0082980653 | 2.286227 | UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| FUS | 16 | 1711 | 0.040476190 | 0.0086255542 | 2.230384 | UUUUUU | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| ELAVL3 | 17 | 1928 | 0.042857143 | 0.0097188634 | 2.140676 | AUUUUA,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| RBM3 | 4 | 541 | 0.011904762 | 0.0027307537 | 2.124168 | AAAACU,AAACUA,AAUACU,GAGACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| DAZAP1 | 25 | 2878 | 0.061904762 | 0.0145052398 | 2.093476 | AGGAAG,AGGAUA,AGGUUA,AGUAAA,AGUAAG,UAGGAU,UAGUUU,UUUUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| AKAP1 | 1 | 221 | 0.004761905 | 0.0011185006 | 2.089973 | AUAUAU | AUAUAU,UAUAUA |
| HNRNPM | 1 | 222 | 0.004761905 | 0.0011235389 | 2.083489 | AAGGAA | AAGGAA,GAAGGA,GGGGGG |
| TIAL1 | 49 | 5597 | 0.119047619 | 0.0282043531 | 2.077549 | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CAGUUU,CUUUUU,GUUUUC,GUUUUU,UCAGUU,UUCAGU,UUUAAA,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| RBM41 | 3 | 502 | 0.009523810 | 0.0025342604 | 1.909974 | AUACAU,AUACUU,UACAUG | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | AAUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| TIA1 | 38 | 5140 | 0.092857143 | 0.0259018541 | 1.841958 | AUUUUG,AUUUUU,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UCCUUU,UUCUCC,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| ELAVL4 | 21 | 2916 | 0.052380952 | 0.0146966949 | 1.833551 | UUGUAU,UUUGUA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| FXR2 | 4 | 730 | 0.011904762 | 0.0036829907 | 1.692589 | GACAAG,GGACAA | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| A1CF | 3 | 598 | 0.009523810 | 0.0030179363 | 1.657976 | AUCAGU,UCAGUA | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| PABPC3 | 1 | 310 | 0.004761905 | 0.0015669085 | 1.603618 | GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| ELAVL1 | 20 | 3309 | 0.050000000 | 0.0166767432 | 1.584091 | UAGUUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| ZNF638 | 3 | 646 | 0.009523810 | 0.0032597743 | 1.546767 | GUUCUU,GUUGGU,UGUUCU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGA | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| G3BP2 | 2 | 490 | 0.007142857 | 0.0024738009 | 1.529772 | AGGAUA,GGAUAA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | UGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| HNRNPAB | 1 | 351 | 0.004761905 | 0.0017734784 | 1.424957 | ACAAAG | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| HNRNPK | 17 | 3244 | 0.042857143 | 0.0163492543 | 1.390311 | CCAACC,UUUUUU | AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU |
| ESRP2 | 3 | 731 | 0.009523810 | 0.0036880290 | 1.368689 | GGGAAG,GGGGAA,UGGGGA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| RBMS3 | 2 | 562 | 0.007142857 | 0.0028365578 | 1.332360 | AUAUAU,CAUAUA | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| PABPC5 | 2 | 596 | 0.007142857 | 0.0030078597 | 1.247764 | AGAAAA,AGAAAU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| FMR1 | 25 | 5430 | 0.061904762 | 0.0273629585 | 1.177826 | AAGGAA,AAGGGA,AGGAAG,GACAAG,GGACAA,UAAGGA,UGGAGU,UUUUUU | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| ELAVL2 | 46 | 9826 | 0.111904762 | 0.0495112858 | 1.176442 | AAUUUU,AUACUU,AUUUUA,AUUUUG,AUUUUU,CUUUUU,GAUUUU,GUUUUA,GUUUUC,GUUUUU,UAUAUU,UAUUGU,UCUUUU,UUCUUU,UUGUAU,UUUAAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PTBP1 | 36 | 8003 | 0.088095238 | 0.0403264813 | 1.127337 | ACUUUU,AUUUUU,CCUCUU,CUCUUG,CUUUUU,UCUUUU,UUCCUU,UUCUUC,UUCUUU,UUUCUU,UUUUCU,UUUUUC,UUUUUU | ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU |
| PUM1 | 9 | 2172 | 0.023809524 | 0.0109482064 | 1.120844 | AAUAUU,AAUGUU,CAGAAU,GUAAUA,UAAUGU,UGUAAA,UGUAUA,UUAAUG,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| PCBP2 | 18 | 4164 | 0.045238095 | 0.0209844821 | 1.108215 | AAACCA,AUUACC,UUUUUU | AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| RBMX | 5 | 1316 | 0.014285714 | 0.0066354293 | 1.106311 | AAGGAA,AAGUAA,AGGAAG,UAACAA | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| PCBP1 | 21 | 4891 | 0.052380952 | 0.0246473196 | 1.087612 | AAACCA,AUUACC,CCAACC,CCUACC,CCUCUU,UUUUUU | AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| SRSF3 | 16 | 3825 | 0.040476190 | 0.0192765014 | 1.070230 | AACUUU,ACCACC,ACUUCG,AUCAAC,CCUCUU,CUCCAA,CUUCAU,CUUCGA,GAGAUU,UACUUC,UCAUCC,UCUCCA,UCUUCA,UUCAUC,UUCUCC,UUCUUC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| SFPQ | 30 | 7087 | 0.073809524 | 0.0357114067 | 1.047422 | AAGGAA,AAGGAC,AAGGGA,AGGGAU,CUGGAG,GUAGUU,UAAGGA,UAAUGU,UAGUUU,UGGAGA,UUAAUG,UUUUUU | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| HNRNPA1 | 26 | 6340 | 0.064285714 | 0.0319478033 | 1.008781 | AGAUUA,AGGAAG,CAAGGA,CCAAGG,GCCAAG,GUAAGU,UAAGUA,UAGGAU,UUUUUU | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.