ENSG00000149311:+:11:108333885:108347365

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000149311:+:11:108333885:108347365 ENSG00000149311 ENST00000683174 + 11 108333886 108347365 744 AAGGCAUAAAUAUUCCAGCAGACCAGCCAAUUACUAAACUUAAGAAUUUAGAAGAUGUUGUUGUCCCUACUAUGGAAAUUAAGGUGGACCACACAGGAGAAUAUGGAAAUCUGGUGACUAUACAGUCAUUUAAAGCAGAAUUUCGCUUAGCAGGAGGUGUAAAUUUACCAAAAAUAAUAGAUUGUGUAGGUUCCGAUGGCAAGGAGAGGAGACAGCUUGUUAAGGGCCGUGAUGACCUGAGACAAGAUGCUGUCAUGCAACAGGUCUUCCAGAUGUGUAAUACAUUACUGCAGAGAAACACGGAAACUAGGAAGAGGAAAUUAACUAUCUGUACUUAUAAGGUGGUUCCCCUCUCUCAGCGAAGUGGUGUUCUUGAAUGGUGCACAGGAACUGUCCCCAUUGGUGAAUUUCUUGUUAACAAUGAAGAUGGUGCUCAUAAAAGAUACAGGCCAAAUGAUUUCAGUGCCUUUCAGUGCCAAAAGAAAAUGAUGGAGGUGCAAAAAAAGUCUUUUGAAGAGAAAUAUGAAGUCUUCAUGGAUGUUUGCCAAAAUUUUCAACCAGUUUUCCGUUACUUCUGCAUGGAAAAAUUCUUGGAUCCAGCUAUUUGGUUUGAGAAGCGAUUGGCUUAUACGCGCAGUGUAGCUACUUCUUCUAUUGUUGGUUACAUACUUGGACUUGGUGAUAGACAUGUACAGAAUAUCUUGAUAAAUGAGCAGUCAGCAGAACUUGUACAUAUAGAUCUAGAAGGCAUAAAUAUUCCAGCAGACCAGCCAAUUACUAAACUUAAGAAUUUA circ
ENSG00000149311:+:11:108333885:108347365 ENSG00000149311 ENST00000683174 + 11 108333886 108347365 22 UAUAGAUCUAGAAGGCAUAAAU bsj
ENSG00000149311:+:11:108333885:108347365 ENSG00000149311 ENST00000683174 + 11 108333686 108333895 210 ACUUGAAGCUACAUUAACCACUGUUGAGCUUUGACUCUGAGCUGCAUAGUGGCCAAAGCCCAGAGUCUUCAUUUCUCAAUCAGAGCCUGAACCACAGAUUAGCAACAAGUUGGGGCCAGUGGUAUCUGCUGACUAUUCCUGCUUGACCUUCAAUGCUGUUCCUCAGUUUGUCACUAAAAUCUCUUCAUUUUUAAAUACAGAAGGCAUAAA ie_up
ENSG00000149311:+:11:108333885:108347365 ENSG00000149311 ENST00000683174 + 11 108347356 108347565 210 AUAGAUCUAGGUAAGUAAUAAAAUCUAUGUAUCUAUUCUUUUUAGUAAAUAUUUGGUCAUCAUGGAAUGUUGUUUGCCUACCAAGAUAUUACAAAUAUAAGAGACAGAUAAAUUGAAGCAGUAAAUAUUGGGUUUUUUUGUUUUCAGCAUAAACAGUUGUCCUAGAAGAAACAGUUAACUCUGCCUGGGGUACUGAGUGAAACUUAAUAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.002688172 0.0001130379 4.571747 GCAUAA GCAUAA
PTBP2 1 267 0.002688172 0.0003883867 2.791060 CUCUCU CUCUCU
HNRNPA0 2 453 0.004032258 0.0006579386 2.615563 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 6 1318 0.009408602 0.0019115000 2.299275 AUACAU,AUACUU,UACAUU,UACUUG,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 3 822 0.005376344 0.0011926949 2.172400 GUGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PUM2 8 1890 0.012096774 0.0027404447 2.142140 GUAAAU,GUACAU,UAAAUA,UACAUA,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ERI1 2 632 0.004032258 0.0009173461 2.136050 UUUCAG UUCAGA,UUUCAG
ZNF638 7 1773 0.010752688 0.0025708878 2.064359 GUUCUU,GUUGGU,GUUGUU,UGUUCU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBFOX2 1 452 0.002688172 0.0006564894 2.033782 UGCAUG UGACUG,UGCAUG
RBMY1A1 1 489 0.002688172 0.0007101099 1.920511 ACAAGA ACAAGA,CAAGAC
RBMS1 1 497 0.002688172 0.0007217036 1.897147 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
NONO 5 1498 0.008064516 0.0021723567 1.892327 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZCRB1 5 1605 0.008064516 0.0023274215 1.792855 AAUUAA,ACUUAA,AUUUAA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 2 813 0.004032258 0.0011796520 1.773227 AAAAAA AAAAAA
EIF4B 3 1179 0.005376344 0.0017100607 1.652578 CUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 3 1222 0.005376344 0.0017723764 1.600940 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM8A 1 611 0.002688172 0.0008869128 1.599761 ACGCGC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PABPC4 3 1251 0.005376344 0.0018144033 1.567130 AAAAAA,AAAAAG AAAAAA,AAAAAG
CELF2 5 1886 0.008064516 0.0027346479 1.560233 AUGUGU,GUUGUU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ENOX1 9 3195 0.013440860 0.0046316558 1.537026 AAUACA,AGACAG,AUACAG,GUACAG,UAGACA,UAUACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ACO1 3 1283 0.005376344 0.0018607779 1.530720 CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 3 1283 0.005376344 0.0018607779 1.530720 AUAUAG,CAUAUA,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM1 17 5823 0.024193548 0.0084401638 1.519279 AAUAUU,AGAAUU,CAGAAU,CUUGUA,GUAAAU,GUAAUA,GUACAU,UAAAUA,UACAUA,UGUAAA,UGUAAU,UGUACA,UUGUAC AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TUT1 1 678 0.002688172 0.0009840095 1.449881 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
MATR3 1 739 0.002688172 0.0010724109 1.325768 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC5 5 2400 0.008064516 0.0034795387 1.212692 AGAAAA,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IFIH1 1 904 0.002688172 0.0013115296 1.035375 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
MSI1 5 2770 0.008064516 0.0040157442 1.005921 AGGAAG,AGGAGG,AGGUGG,UAGGAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMX 1 34 0.09090909 0.002292376 5.309509 AGAAGG AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
TRA2B 1 51 0.09090909 0.003405816 4.738352 AGAAGG AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
SRSF7 1 128 0.09090909 0.008449044 3.427565 GAAGGC AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF9 1 134 0.09090909 0.008842023 3.361976 GAAGGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF2 2 479 0.13636364 0.031438302 2.116864 CUAGAA,GAAGGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.13636364 0.041000786 1.733736 AGAAGG,GAAGGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 2 35 0.007142857 0.0001813785 5.299426 GCAUAA GCAUAA
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SSB 3 505 0.009523810 0.0025493753 1.901395 GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PUM2 5 764 0.014285714 0.0038542926 1.890035 GUAAAU,UAAAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
KHDRBS3 10 1646 0.026190476 0.0082980653 1.658195 AAUAAA,AGAUAA,AUAAAA,AUAAAC,GAUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
KHDRBS2 6 1051 0.016666667 0.0053002821 1.652825 AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
SF1 6 1294 0.016666667 0.0065245869 1.353007 AUUAAC,CACAGA,GCUGAC,UACUGA,UAGUAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAUACA,AGACAG,AUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AAUAUU,AAUGUU,AGAUAA,GUAAAU,GUAAUA,UAAAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAC,AAUAAA,AAUACA,ACCACA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AGGCAU,CCUAGA,GAGACA,UAGAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,GGGUAC,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAUC,AAAUAC,AAUACA,CAAUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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