ENSG00000141564:+:17:80625690:80925480

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000141564:+:17:80625690:80925480 ENSG00000141564 ENST00000306801 + 17 80625691 80925480 2757 AUGAAGACAGUCAGUGUUGCCUUAGUUUUGUGCCUGAAUGUUGGUGUGGACCCUCCCGAUGUGGUGAAGACCACGCCCUGUGCACGCUUGGAAUGCUGGAUCGAUCCUCUGUCGAUGGGUCCUCAGAAAGCUCUGGAAACCAUCGGUGCAAAUUUACAGAAGCAGUACGAGAACUGGCAGCCAAGGGCCCGGUACAAGCAGAGCCUUGACCCAACUGUGGAUGAAGUCAAGAAGCUCUGCACGUCCUUACGUCGCAACGCCAAGGAGGAGCGAGUCCUCUUUCACUACAAUGGCCACGGGGUGCCCCGGCCCACAGUCAACGGGGAGGUCUGGGUCUUCAACAAGAACUACACGCAGUACAUCCCUCUGUCCAUAUAUGACCUGCAGACGUGGAUGGGCAGCCCGUCGAUCUUCGUCUACGACUGCUCCAAUGCUGGCUUGAUCGUCAAGUCCUUCAAGCAGUUCGCACUACAGCGGGAGCAGGAGCUGGAGGUAGCUGCAAUCAACCCAAAUCACCCUCUUGCUCAGAUGCCUUUGCCUCCGUCGAUGAAAAACUGCAUCCAGCUGGCAGCCUGCGAGGCCACCGAGCUGCUGCCCAUGAUCCCCGACCUCCCGGCUGACCUAUUCACCUCCUGCCUCACCACCCCCAUCAAGAUCGCCCUGCGCUGGUUUUGCAUGCAGAAAUGUGUCAGUCUGGUGCCUGGCGUCACACUGGAUUUGAUAGAAAAGAUCCCUGGCCGCCUGAACGACAGGAGGACGCCCCUGGGUGAACUGAACUGGAUCUUCACAGCCAUCACAGACACCAUCGCGUGGAACGUGCUCCCCCGGGAUCUCUUCCAAAAGCUCUUCAGACAGGACUUGCUGGUGGCUAGUCUGUUUCGAAAUUUUUUAUUGGCGGAAAGGAUUAUGAGGUCGUAUAACUGCACUCCCGUCAGCAGCCCGCGUCUGCCGCCCACGUACAUGCACGCCAUGUGGCAAGCCUGGGACCUGGCUGUUGACAUCUGUCUGUCUCAGCUGCCGACGAUCAUCGAGGAAGGCACUGCGUUUCGGCACAGCCCGUUCUUCGCCGAGCAGCUGACCGCAUUCCAGGUGUGGCUCACCAUGGGCGUGGAGAACCGAAACCCACCCGAACAGCUGCCCAUCGUCCUGCAGGUGCUGUUAAGCCAAGUGCACCGGCUGAGAGCAUUGGACUUGCUUGGAAGAUUUUUGGACCUGGGUCCCUGGGCAGUGAGCCUGGCCUUGUCUGUCGGCAUCUUCCCCUACGUGCUGAAGCUGCUCCAGAGCUCGGCCCGAGAGCUGCGGCCACUUCUCGUUUUCAUCUGGGCCAAGAUCCUCGCAGUGGACAGCUCGUGCCAAGCGGACCUCGUGAAGGACAACGGCCACAAGUACUUCCUGUCGGUCCUGGCGGACCCCUACAUGCCAGCUGAACACCGGACCAUGACGGCUUUCAUUCUCGCCGUGAUCGUCAACAGCUAUCACACGGGGCAGGAAGCCUGCCUUCAGGGAAACCUCAUUGCCAUCUGCCUGGAGCAGCUCAACGACCCGCACCCCUUGCUGCGCCAGUGGGUGGCCAUCUGCCUCGGCAGGAUCUGGCAGAACUUCGACUCGGCGAGGUGGUGCGGCGUGAGGGACAGCGCUCAUGAGAAGCUCUACAGCCUCCUCUCCGACCCCAUUCCCGAGGUCCGCUGCGCAGCGGUCUUCGCCCUUGGCACGUUCGUGGGCAACUCUGCAGAGAGGACGGACCACUCCACCACCAUCGACCACAACGUGGCCAUGAUGCUGGCCCAGCUGGUCAGCGACGGGAGCCCCAUGGUCCGGAAGGAGCUGGUGGUGGCUCUGAGUCAUCUUGUGGUUCAGUAUGAAAGCAAUUUCUGCACCGUGGCCCUGCAGUUCAUAGAAGAGGAAAAGAACUACGCCUUGCCUUCUCCAGCAACCACAGAGGGAGGGAGUUUGACCCCAGUGCGAGACAGCCCGUGCACCCCCAGACUUCGUUCUGUGAGCUCCUAUGGAAACAUCCGUGCUGUCGCCACAGCCAGGAGCCUCAACAAAUCUUUGCAGAACCUGAGUUUGACAGAGGAAUCUGGUGGCGCGGUGGCGUUCUCCCCCGGAAACCUCAGCACCAGCAGCAGCGCCAGCAGCACCCUGGGCAGCCCCGAGAAUGAGGAGCAUAUCCUGUCCUUCGAGACCAUCGACAAGAUGCGCCGCGCCAGCUCCUACUCCUCCCUCAACUCCCUCAUCGGAGUUUCCUUUAACAGUGUUUACACUCAGAUUUGGAGAGUCCUGCUGCACCUGGCUGCUGACCCCUAUCCAGAGGUCUCGGACGUGGCCAUGAAAGUACUCAACAGCAUCGCCUACAAGGCCACCGUGAACGCCCGGCCGCAGCGCGUCCUGGACACCUCCUCCCUCACGCAGUCGGCCCCCGCCAGCCCCACCAACAAGGGCGUGCACAUCCACCAGGCGGGGGGCUCCCCUCCGGCGUCCAGCACCAGCAGCUCCAGCCUGACCAACGAUGUGGCCAAGCAGCCGGUCAGCCGAGACUUGCCUUCUGGCCGGCCGGGCACCACAGGCCCCGCUGGGGCGCAGUACACCCCUCACUCCCACCAGUUCCCCCGGACACGGAAGAUGUUCGACAAGGGCCCAGAGCAGACUGCGGACGACGCGGACGAUGCUGCUGGACACAAAAGUUUCAUCUCCGCCACGGUGCAGACGGGGUUCUGCGACUGGAGCGCCCGCUAUUUUGCCCAGCCCGUCAUGAAGAUGAAGACAGUCAGUGUUGCCUUAGUUUUGUGCCUGAAUGUUGGUGUGGA circ
ENSG00000141564:+:17:80625690:80925480 ENSG00000141564 ENST00000306801 + 17 80625691 80925480 22 CCGUCAUGAAGAUGAAGACAGU bsj
ENSG00000141564:+:17:80625690:80925480 ENSG00000141564 ENST00000306801 + 17 80625491 80625700 210 GCUGUGAAACCCUGCCUUCAAAGAAGGGCGUUACUCCUGCACUAGGGCUGGGGUAGCCAGGUGACAGGCGGAGGACUGGCUGGAGGGCAGGUGGGUAGGGAAGGGGCUCAAUGUUCUGGGGGACAUUUUAAAAGCUGGAAAAACACAUAAACGAGUUCCAUAUUGAAAUAUUUAUUUAUUUUUUUCUGUUGUGUUUUCAGAUGAAGACAG ie_up
ENSG00000141564:+:17:80625690:80925480 ENSG00000141564 ENST00000306801 + 17 80925471 80925680 210 CGUCAUGAAGGUGCGCCCGGGGUGUGGGGUUCAGAGUAGAGUCCUAGCGAACAUGUGUCUGUCCCACUUCUUUGAGCAUAAACGCUCAAGGCUUGUGGCUGUGGGAGCGUCCCAUUGUGGUCGUGGUAGUGAUGGUCACGGUUGAGGUAGAACCGCAGAAGAAACAAACUUCACUUACCUUCCUGUCGCCAAACGAAAAGAGAAAACCUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 3 339 0.0014508524 0.0004927293 1.558033 AGACGU,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ZC3H10 11 1053 0.0043525571 0.0015274610 1.510728 CAGCGA,CAGCGC,GAGCGA,GAGCGC,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
IGF2BP1 8 831 0.0032644178 0.0012057377 1.436910 AGCACC,CACCCG,CCCGUU,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SUPV3L1 1 199 0.0007254262 0.0002898408 1.323568 CCGCCC CCGCCC
RBM42 3 407 0.0014508524 0.0005912752 1.294999 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
RBM8A 5 611 0.0021762786 0.0008869128 1.294999 AUGCGC,CGCGCC,UGCGCC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
FXR1 3 411 0.0014508524 0.0005970720 1.280924 ACGACA,ACGACG,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA3 18 2140 0.0068915488 0.0031027457 1.151283 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM46 1 14 0.09090909 0.0009824469 6.531901 GAUGAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
SRSF1 3 625 0.18181818 0.0410007860 2.148773 GAAGAU,GAUGAA,UGAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
RBM8A 2 84 0.007142857 0.0004282547 4.059960 GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
AGO1 4 283 0.011904762 0.0014308746 3.056570 AGGUAG,GAGGUA,GGUAGU,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
PABPC3 4 310 0.011904762 0.0015669085 2.925546 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
ZFP36L2 8 774 0.021428571 0.0039046755 2.456261 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AAGACA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPH2 21 3198 0.052380952 0.0161174929 1.700415 AAGGGG,AAGGUG,AGGGAA,CUGGGG,GAAGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGCGU,GGGCUG,GGGGCU,GGGGGA,GGGUGU,UGGGGG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF6 7 1196 0.019047619 0.0060308343 1.659181 GUGAUG,GUGGGG,GUGUGG,UGUGGG,UGUGGU,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPH1 21 3406 0.052380952 0.0171654575 1.609534 AAGGGG,AAGGUG,AGGGAA,CUGGGG,GAAGGG,GAAGGU,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGCGU,GGGCUG,GGGGCU,GGGUGU,UGGGGG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUG,GUGUGG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPH3 14 2496 0.035714286 0.0125806127 1.505299 AAGGUG,AGGGAA,GAAGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGCGU,GGGCUG,GGGGCU,GGGUGU,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGG,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPF 19 3360 0.047619048 0.0169336961 1.491642 AAGGGG,AAGGUG,AGGGAA,CUGGGG,GAAGGG,GAAGGU,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGCUG,GGGGCU,GGGGUA,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
CELF2 4 881 0.011904762 0.0044437727 1.421682 AUGUGU,GUCUGU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAACAA,AAACAC,AACAAA,AACACA,ACAUAA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
LIN28A 4 900 0.011904762 0.0045395002 1.390933 CGGAGG,GGAGGA,GGAGGG,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAG,GACAGG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CELF1 5 1097 0.014285714 0.0055320435 1.368689 GUUGUG,UGUCUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAC,ACAAAC,AGAAAA,CGAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CUGGAA,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAGAAG,AGAAGA,AGAAGG,GAAGAA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAC,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAAC,AAAACA,AAACAC,AACACA,ACAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AGAAGA,CACAUA,CCGCAG,CGCAGA,GAAGAA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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