ENSG00000171316:+:8:60741258:60781430

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000171316:+:8:60741258:60781430 ENSG00000171316 ENST00000423902 + 8 60741259 60781430 2270 GACCUAUAUCCAGACUUUGCCUGACACUGCAGGGUCCAAGAGAAUUAAAGAAAUAUGGAAUGACAUGAAGAAGAUUAGUUAAGGAUUAUAGGCUUUGAGGGCAAACACCUCAGUGAAGUGAAGCACAGGCAAGCUCCUGAGCUGUGGUUUGGAGGAGCCGUGUGUUGGAAGAAGAUGGCAGAUCCAGGAAUGAUGAGUCUUUUUGGCGAGGAUGGGAAUAUUUUCAGUGAAGGUCUUGAAGGCCUCGGAGAAUGUGGUUACCCGGAAAAUCCAGUAAAUCCUAUGGGUCAGCAAAUGCCAAUAGACCAAGGCUUUGCCUCUUUACAGCCAUCCCUUCAUCAUCCUUCAACUAAUCAAAAUCAAACAAAGCUGACACAUUUUGAUCACUAUAAUCAGUAUGAACAACAAAAGAUGCAUCUGAUGGAUCAGCCGAACAGAAUGAUGAGCAACACCCCUGGGAACGGACUCGCGUCUCCGCACUCGCAGUAUCACACCCCUCCCGUUCCUCAGGUGCCCCAUGGUGGCAGUGGUGGCGGUCAGAUGGGUGUCUACCCUGGCAUGCAGAAUGAGAGGCAUGGGCAAUCCUUUGUGGACAGCAGCUCCAUGUGGGGCCCCAGGGCUGUUCAGGUACCAGACCAGAUACGAGCCCCCUACCAGCAGCAGCAGCCACAGCCGCAGCCACCGCAGCCGGCUCCGUCGGGGCCCCCUGCACAGGGCCACCCUCAGCACAUGCAGCAGAUGGGCAGCUAUAUGGCACGUGGGGAUUUUUCCAUGCAGCAGCAUGGUCAGCCACAGCAGAGGAUGAGCCAGUUUUCCCAAGGCCAAGAGGGCCUCAAUCAGGGAAAUCCUUUUAUUGCCACCUCAGGACCUGGCCACUUGUCCCACGUGCCCCAGCAGAGUCCCAGCAUGGCACCUUCCUUGCGUCACUCGGUGCAGCAGUUCCAUCACCACCCCUCUACUGCUCUCCAUGGAGAAUCCGUUGCCCACAGUCCCAGAUUCUCCCCGAAUCCUCCCCAACAAGGGGCUGUUAGGCCGCAAACCCUUAACUUUAGUUCUCGGAGCCAGACAGUCCCCUCUCCUACUAUAAACAACUCAGGGCAGUAUUCUCGAUAUCCUUACAGUAACCUAAAUCAGGGAUUAGUUAACAAUACAGGGAUGAAUCAAAAUUUAGGCCUUACAAAUAAUACUCCAAUGAAUCAGUCCGUACCAAGAUACCCCAAUGCUGUAGGAUUCCCAUCAAACAGUGGUCAAGGACUAAUGCACCAGCAGCCCAUCCACCCCAGUGGCUCACUUAACCAAAUGAACACACAAACUAUGCAUCCUUCACAGCCUCAGGGAACUUAUGCCUCUCCACCUCCCAUGUCACCCAUGAAAGCAAUGAGUAAUCCAGCAGGCACUCCUCCUCCACAAGUCAGGCCGGGAAGUGCUGGGAUACCAAUGGAAGUUGGCAGUUAUCCAAAUAUGCCCCAUCCUCAGCCAUCUCACCAGCCCCCUGGUGCCAUGGGAAUCGGACAGAGGAAUAUGGGCCCCAGAAACAUGCAGCAGUCUCGUCCAUUUAUAGGCAUGUCCUCGGCACCAAGGGAAUUGACUGGGCACAUGAGGCCAAAUGGUUGUCCUGGUGUUGGCCUUGGAGACCCACAAGCAAUCCAGGAACGACUGAUACCUGGCCAACAACAUCCUGGUCAACAGCCAUCUUUUCAGCAGUUGCCAACCUGUCCUCCACUGCAGCCUCACCCGGGCUUGCACCACCAGUCUUCACCUCCACACCCUCAUCACCAGCCUUGGGCACAGCUCCACCCAUCACCCCAGAACACCCCGCAGAAAGUGCCUGUGCAUCAGCAUUCCCCGUCGGAGCCCUUUCUAGAGAAACCAGUGCCGGAUAUGACUCAGGUUAGUGGACCGAAUGCUCAGCUAGUGAAGAGUGAUGAUUACCUGCCAUCAAUAGAACAGCAGCCACAACAAAAGAAGAAGAAAAAGAAAAACAACCACAUUGUAGCAGAGGAUCCCAGUAAAGGUUUUGGUAAAGAUGACUUCCCUGGUGGGGUAGAUAACCAAGAACUAAAUAGGAACUCACUGGAUGGGUCCCAAGAAGAAAAAAAGAAAAAGAAAAGGUCAAAGGCAAAAAAAGACCCGAAGGAACCGAAAGAACCCAAGGAGAAAAAAGAGCCCAAGGAACCCAAGACCCCGAAAGCCCCUAAGAUUCCCAAAGAGCCAAAGGAAAAGAAAGCAAAAACUGCCACGCCAAAACCCAAAUCCAGCAAAAAGUCAAGGACCUAUAUCCAGACUUUGCCUGACACUGCAGGGUCCAAGAGAAUUAAAG circ
ENSG00000171316:+:8:60741258:60781430 ENSG00000171316 ENST00000423902 + 8 60741259 60781430 22 AAAAAGUCAAGGACCUAUAUCC bsj
ENSG00000171316:+:8:60741258:60781430 ENSG00000171316 ENST00000423902 + 8 60741059 60741268 210 UCAUAAUGAUGCUUCUGGUAGAAGCUAAUGAGUUUCUCUUAAAGUGAACUAAAUUUAUAAAAUACAGCUCAGCGAGGGAGCUAGAUUCGUAUUGUUGAUGGGGACCAAAUUCAGAUGUACAAAAUACUGGCAGUUUUUAUCAUUGGAUCCUAAUUCUUUGUUUUCUUCCUUCUUCUCCCCCACCCCAAACUCCCUUCCAGGACCUAUAUC ie_up
ENSG00000171316:+:8:60741258:60781430 ENSG00000171316 ENST00000423902 + 8 60781421 60781630 210 AAAAGUCAAGGUAGGCUGUGGGCAGAAAAAACAACUGCAAAACAUUGAGAGUACAGAAAUUAGCGCCAAAUAGUUACAGCCUAUGAAAUGAGGGGUGGGAGGGGACACAAUGAUUUUUGUCAUCAUUGAGUUUCUUUCCCUAAUAUCCAAACUAAAAAGCUAAGGCUUUUACGCAUUCUGAAAGUUAGGACUUAUUGUUGUGAACUGUUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 2 156 0.0013215859 0.0002275250 2.538173 AGGGAU AGGGAU
RBM6 14 1054 0.0066079295 0.0015289102 2.111695 AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PABPN1 13 1222 0.0061674009 0.0017723764 1.798978 AAAAGA,AGAAGA AAAAGA,AGAAGA
PABPC4 11 1251 0.0052863436 0.0018144033 1.542775 AAAAAA,AAAAAG AAAAAA,AAAAAG
SRSF11 5 688 0.0026431718 0.0009985015 1.404434 AAGAAG AAGAAG
HNRNPA3 15 2140 0.0070484581 0.0031027457 1.183762 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PABPC1 32 4443 0.0145374449 0.0064402624 1.174582 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAAUC,CUAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
IGHMBP2 5 813 0.0026431718 0.0011796520 1.163909 AAAAAA AAAAAA
TUT1 4 678 0.0022026432 0.0009840095 1.162492 AAUACU,AGAUAC,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM42 2 407 0.0013215859 0.0005912752 1.160369 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SART3 18 2634 0.0083700441 0.0038186524 1.132172 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
NXF1 1 286 0.0008810573 0.0004159215 1.082924 AACCUG AACCUG
EIF4B 7 1179 0.0035242291 0.0017100607 1.043260 CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAC,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
YBX2 9 1480 0.0044052863 0.0021462711 1.037404 AACAAC,AACAUC,ACAACA,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
G3BP2 10 1644 0.0048458150 0.0023839405 1.023391 AGGAUG,AGGAUU,GGAUGA,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
NONO 9 1498 0.0044052863 0.0021723567 1.019975 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA3 1 5 0.09090909 0.0003929788 7.853829 CAAGGA AGGAGC,CAAGGA,CCAAGG,GCCAAG
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 CAAGGA AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
RBM5 1 56 0.09090909 0.0037332984 4.605902 CAAGGA AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
SFPQ 2 153 0.13636364 0.0100864553 3.756968 AAGGAC,AGGACC AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 CAAGGA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
ZFP36 1 126 0.09090909 0.0083180508 3.450107 CAAGGA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF7 1 128 0.09090909 0.0084490438 3.427565 AAGGAC AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF9 1 134 0.09090909 0.0088420225 3.361976 AGGACC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 3 625 0.18181818 0.0410007860 2.148773 AAGGAC,AGGACC,CAAGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
TUT1 3 230 0.009523810 0.0011638452 3.032640 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 CAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ENOX1 5 756 0.014285714 0.0038139863 1.905202 AAUACA,AGUACA,AUACAG,GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RC3H1 4 631 0.011904762 0.0031841999 1.902536 CCCUUC,CCUUCU,CUUCUG,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
IGF2BP3 9 1348 0.023809524 0.0067966546 1.808642 AAAAAC,AAAACA,AAACUC,AAAUAC,AAAUUC,AAUACA,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AAUGAU,AUCAUU,AUGAAA,AUGAUG,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGF2BP2 13 2163 0.033333333 0.0109028617 1.612259 AAAAAC,AAAACA,AAACUC,AAAUAC,AAAUUC,AAUACA,AAUUCA,CAAAAC,CCAAAC,GCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM4 6 1094 0.016666667 0.0055169287 1.595028 CCUUCC,CCUUCU,CUUCCU,CUUCUU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAACUA,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 CUAUAU,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,AAAAAC,AGAAAA,CAAAUA,CUAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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