circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000124788:-:6:16657775:16657901
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000124788:-:6:16657775:16657901 | ENSG00000124788 | ENST00000244769 | - | 6 | 16657776 | 16657901 | 126 | CAUACUGGAGCAUAGUGAAAGAGUCUAUUUUGAAGCUUCAAACUUAGUGCUGCUGCAGACCAGGAACAAGAGAGAAAGAGUGGAUUUCAGCCUGCACGGAUGGUCUUGAAACACAAAUGGUUUUUGCAUACUGGAGCAUAGUGAAAGAGUCUAUUUUGAAGCUUCAAACUUAGUGC | circ |
| ENSG00000124788:-:6:16657775:16657901 | ENSG00000124788 | ENST00000244769 | - | 6 | 16657776 | 16657901 | 22 | AAUGGUUUUUGCAUACUGGAGC | bsj |
| ENSG00000124788:-:6:16657775:16657901 | ENSG00000124788 | ENST00000244769 | - | 6 | 16657892 | 16658101 | 210 | UUCCCACACCCCACCUCCAGUAUUUUAGGGCACCUUAUGUAGAUAAGCAGUGAGAUGGCUUCAUCCUGAUAAUUAACAUGCUUGUUUGAGGUUAUGAAAUAUACAUUUGAGAAAGGCCAGGGAUUUCCCCCUGAAUAUCCACUAACUGCUUGAAGUGGCAUUUUCAUUCUGACUUGGUAUUUUGUUUUGUUUGACUGCAGCAUACUGGAG | ie_up |
| ENSG00000124788:-:6:16657775:16657901 | ENSG00000124788 | ENST00000244769 | - | 6 | 16657576 | 16657785 | 210 | AUGGUUUUUGGUAAGUCAUCCAAAAGACUUGACAUCUUUUAGCUUUAAAUGUCAUCGGGCAUCACUUCACUGGUGUACCAGAACUUCUUCUUCAAGCGUAUUGCUAUUUCUCUACAUCCUAAAUAACAGGACAUUUGAAAAAAUGUUGUCCUAGUGACAGAGCACUGAGAGAGCAACCGCAUUUACUUUAUGUGUUUGUUUCUGAAACUU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBMY1A1 | 1 | 489 | 0.01587302 | 0.0007101099 | 4.482390 | ACAAGA | ACAAGA,CAAGAC |
| ERI1 | 1 | 632 | 0.01587302 | 0.0009173461 | 4.112966 | UUUCAG | UUCAGA,UUUCAG |
| NONO | 1 | 1498 | 0.01587302 | 0.0021723567 | 2.869243 | AGGAAC | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| RALY | 1 | 1553 | 0.01587302 | 0.0022520629 | 2.817257 | UUUUUG | UUUUUC,UUUUUG,UUUUUU |
| RBM24 | 2 | 2357 | 0.02380952 | 0.0034172229 | 2.800642 | AGAGUG,GAGUGG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| G3BP2 | 1 | 1644 | 0.01587302 | 0.0023839405 | 2.735156 | GGAUGG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| AGO2 | 1 | 1830 | 0.01587302 | 0.0026534924 | 2.580612 | AGUGCU | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| YTHDC1 | 5 | 5576 | 0.04761905 | 0.0080822104 | 2.558717 | GCAUAC,GCCUGC,UAGUGC,UGCUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| HNRNPL | 4 | 5085 | 0.03968254 | 0.0073706513 | 2.428640 | AAACAC,AACACA,ACACAA,CACAAA | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| HNRNPCL1 | 1 | 2062 | 0.01587302 | 0.0029897078 | 2.408500 | UUUUUG | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| HNRNPC | 2 | 3471 | 0.02380952 | 0.0050316361 | 2.242439 | GCAUAC,UUUUUG | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PABPC5 | 1 | 2400 | 0.01587302 | 0.0034795387 | 2.189608 | AGAAAG | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| TARDBP | 1 | 2654 | 0.01587302 | 0.0038476365 | 2.044532 | UUUUGC | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| SRSF10 | 9 | 13860 | 0.07936508 | 0.0200874160 | 1.982212 | AAAGAG,AAGAGA,AGAGAA,AGAGAG,GAAAGA,GAGAAA,GAGAGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| ELAVL1 | 3 | 5554 | 0.03174603 | 0.0080503280 | 1.979457 | UAUUUU,UGGUUU,UUUUUG | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| ELAVL3 | 1 | 2867 | 0.01587302 | 0.0041563169 | 1.933199 | UAUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| IGF2BP3 | 2 | 4815 | 0.02380952 | 0.0069793662 | 1.770371 | AAACAC,AACACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| SF1 | 2 | 4931 | 0.02380952 | 0.0071474739 | 1.736033 | UGCUGC | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| TIAL1 | 5 | 10182 | 0.04761905 | 0.0147572438 | 1.690115 | AUUUUG,GUUUUU,UAUUUU,UUUCAG,UUUUUG | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| TRA2A | 3 | 6871 | 0.03174603 | 0.0099589296 | 1.672514 | AGAAAG,GAAAGA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| HNRNPLL | 1 | 3534 | 0.01587302 | 0.0051229360 | 1.631534 | GCAUAC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| TIA1 | 4 | 9206 | 0.03968254 | 0.0133428208 | 1.572441 | AUUUUG,GUUUUU,UAUUUU,UUUUUG | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| IGF2BP2 | 3 | 8408 | 0.03174603 | 0.0121863560 | 1.381309 | AAACAC,AACACA,GCAUAC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| SFPQ | 10 | 24050 | 0.08730159 | 0.0348548043 | 1.324650 | AGAGAG,AGGAAC,CUGGAG,UGAAGC,UGGAGC,UGGUCU,UGGUUU,UUAGUG,UUGAAG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| SRSF5 | 3 | 8869 | 0.03174603 | 0.0128544391 | 1.304310 | CACGGA,UGCAGA,UGCAUA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| PABPC1 | 1 | 4443 | 0.01587302 | 0.0064402624 | 1.301385 | ACAAAU | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| MBNL1 | 5 | 13372 | 0.04761905 | 0.0193802045 | 1.296955 | CUGCUG,GCUGCU,GUGCUG,UGCUGC | ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU |
| SRSF9 | 8 | 20254 | 0.07142857 | 0.0293536261 | 1.282963 | AGGAAC,GGAACA,GGAGCA,GGAUGG,UGAAAG,UGAAGC,UGGAGC,UGGAUU | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| TRA2B | 2 | 7329 | 0.02380952 | 0.0106226650 | 1.164393 | GAAAGA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| ELAVL4 | 1 | 5105 | 0.01587302 | 0.0073996354 | 1.101050 | UAUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPC | 1 | 5 | 0.09090909 | 0.0003929788 | 7.853829 | GCAUAC | GGAUAU,GGAUUC,GGGUAC |
| HNRNPLL | 1 | 9 | 0.09090909 | 0.0006549646 | 7.116864 | GCAUAC | ACAAAC,ACACCA,ACAUAC,ACGACA,CACCAC,CAGACG,CAUACA,GACGAC |
| TARDBP | 1 | 10 | 0.09090909 | 0.0007204611 | 6.979360 | UUUUGC | GAAUGA,GAAUGU,GUUUUG,UGUGUG,UUGUGC,UUGUUC |
| YTHDC1 | 1 | 20 | 0.09090909 | 0.0013754257 | 6.046474 | GCAUAC | GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC |
| IGF2BP2 | 1 | 34 | 0.09090909 | 0.0022923762 | 5.309509 | GCAUAC | AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC |
| SRSF5 | 1 | 44 | 0.09090909 | 0.0029473408 | 4.946939 | UGCAUA | AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC |
| SRSF1 | 1 | 625 | 0.09090909 | 0.0410007860 | 1.148773 | GCAUAC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM25 | 3 | 53 | 0.009523810 | 0.0002720677 | 5.129501 | AUCGGG,CGGGCA,UCGGGC | AUCGGG,CGGGCA,UCGGGC |
| ESRP1 | 1 | 46 | 0.004761905 | 0.0002367997 | 4.329800 | AGGGAU | AGGGAU |
| CNOT4 | 1 | 65 | 0.004761905 | 0.0003325272 | 3.839994 | GACAGA | GACAGA |
| RBM6 | 3 | 191 | 0.009523810 | 0.0009673519 | 3.299426 | AUCCAA,CAUCCA,UAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| RBFOX2 | 1 | 124 | 0.004761905 | 0.0006297864 | 2.918604 | UGACUG | UGACUG,UGCAUG |
| PABPN1 | 1 | 178 | 0.004761905 | 0.0009018541 | 2.400573 | AAAAGA | AAAAGA,AGAAGA |
| HNRNPA1L2 | 1 | 188 | 0.004761905 | 0.0009522370 | 2.322146 | UUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| SNRPB2 | 2 | 288 | 0.007142857 | 0.0014560661 | 2.294425 | GUAUUG,UAUUGC | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| RBM41 | 4 | 502 | 0.011904762 | 0.0025342604 | 2.231902 | AUACAU,UACAUU,UACUUU,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| MATR3 | 1 | 216 | 0.004761905 | 0.0010933091 | 2.122837 | CAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| RBMS1 | 1 | 217 | 0.004761905 | 0.0010983474 | 2.116204 | AUAUAC | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | UUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| PUM2 | 5 | 764 | 0.014285714 | 0.0038542926 | 1.890035 | GUAGAU,UAAAUA,UACAUC,UAGAUA,UGUAGA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| CSTF2 | 7 | 1022 | 0.019047619 | 0.0051541717 | 1.885798 | GUGUUU,GUUUUG,UGUGUU,UGUUUG,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| YBX2 | 1 | 263 | 0.004761905 | 0.0013301088 | 1.839994 | ACAUCU | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | UGAGGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBFOX1 | 1 | 287 | 0.004761905 | 0.0014510278 | 1.714464 | UGACUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| A1CF | 3 | 598 | 0.009523810 | 0.0030179363 | 1.657976 | AUAAUU,CAGUAU,UAAUUA | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| HNRNPLL | 4 | 748 | 0.011904762 | 0.0037736800 | 1.657495 | ACCGCA,ACUGCA,CACACC,GCAUAC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| CELF1 | 6 | 1097 | 0.016666667 | 0.0055320435 | 1.591081 | GUUUGU,UGUGUU,UGUUGU,UGUUUG | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGA | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | UGUAGA | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| IGHMBP2 | 1 | 350 | 0.004761905 | 0.0017684401 | 1.429061 | AAAAAA | AAAAAA |
| HNRNPAB | 1 | 351 | 0.004761905 | 0.0017734784 | 1.424957 | AAAGAC | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | AAGACU,GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| SRSF3 | 20 | 3825 | 0.050000000 | 0.0192765014 | 1.375085 | ACUUCA,ACUUCU,ACUUUA,CACUUC,CAUCAC,CUUCAA,CUUCAC,CUUCAU,CUUCUU,CUUUAU,GCUUCA,UACAUC,UCAUCC,UCAUCG,UCUUCA,UUCAUC,UUCUUC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| CELF2 | 3 | 881 | 0.009523810 | 0.0044437727 | 1.099754 | AUGUGU,UAUGUG,UGUUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| CELF5 | 2 | 669 | 0.007142857 | 0.0033756550 | 1.081334 | GUGUUU,UGUGUU | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| QKI | 3 | 904 | 0.009523810 | 0.0045596534 | 1.062615 | ACUAAC,AUUAAC,CACUAA | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| PABPC4 | 1 | 462 | 0.004761905 | 0.0023327287 | 1.029520 | AAAAAA | AAAAAA,AAAAAG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.