ENSG00000068885:-:3:160356012:160381718

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000068885:-:3:160356012:160381718 ENSG00000068885 ENST00000483465 - 3 160356013 160381718 734 AAUUAGUAAGCUGUGUGGGCUGGACUACUGCUGAAGAGCUGUAUUCAUGUAGUGAUGAUCACCAGAUAGUGAAGUGGAACUUGUUAACCAGUGAAACAACUCAAAUAGUAAAGCUUCCUGAUGAUAUUUACCCUAUUGAUUUUCACUGGUUUCCAAAAAGUUUGGGUGUAAAGAAACAAACCCAGGCAGAAAGCUUUGUCCUCACAAGUUCUGAUGGUAAAUUUCAUCUGAUUUCCAAGUUAGGAAGAGUGGAAAAAAGUGUAGAAGCUCACUGUGGAGCAGUACUUGCAGGAAGAUGGAAUUAUGAAGGAACAGCAUUAGUUACAGUUGGAGAAGAUGGACAAAUAAAAAUUUGGUCAAAGACUGGGAUGCUUAGAUCAACUUUAGCUCAGCAAGGAACACCAGUGUAUUCAGUAGCGUGGGGCCCUGAUUCAGAAAAGGUUCUUUAUACAGCAGGCAAGCAGCUAAUCAUUAAACCUCUUCAACCAAAUGCUAAAGUUUUGCAGUGGAAAGCUCAUGAUGGCAUUAUUUUAAAAGUAGAUUGGAACUCGGUCAAUGAUCUUAUUUUAUCUGCUGGUGAAGACUGUAAAUAUAAGGUAUGGGAUAGUUACGGCCGCCCACUGUACAAUUCACAACCUCAUGAGCAUCCCAUUACUUCAGUUGCCUGGGCUCCAGAUGGAGAAUUAUUUGCUGUUGGAUCGUUUCAUACUUUACGCUUGUGUGAUAAAACUGGGAAUUAGUAAGCUGUGUGGGCUGGACUACUGCUGAAGAGCUGUAUUCAUGU circ
ENSG00000068885:-:3:160356012:160381718 ENSG00000068885 ENST00000483465 - 3 160356013 160381718 22 AUAAAACUGGGAAUUAGUAAGC bsj
ENSG00000068885:-:3:160356012:160381718 ENSG00000068885 ENST00000483465 - 3 160381709 160381918 210 AUUUUUACAAUUCUUUUAAUAGAUGCUUAUUUUCUUUUAUAUAGAAAAAAAUACCAGUCAUAAAAUGGAAAAUACAUUUAGAAUCUUGAAACCAUUUGACCCUAUUUUACUUAUACCUUAUAAUCUGCAUCUGUGAAUUAUUCAUUAAGAUUAAAGACUUUUGUAUGUUUUAUGUCUCUUUAACAUGGUGACACAUCAAGAAUUAGUAAG ie_up
ENSG00000068885:-:3:160356012:160381718 ENSG00000068885 ENST00000483465 - 3 160355813 160356022 210 UAAAACUGGGGUAAGUUAUAGUGGUGAGCAAUCACAGAUGUGCUGUCAUAAAUGUGGUAAUGCACAACACACAUGGUUCUCAGUCUUUAAAAAACAUUUUCAAUGGAUGCAUCUGGUUGAAUCUUUCUGAUUUGUCUUCUUAAUAUGCUGGUUCAAUCAAUUCCAGAUAUAUGGGACCAAAAUCUGUUUAAGUUUGAAGCAUGGGCACGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 199 0.002724796 0.0002898408 3.232815 CCGCCC CCGCCC
RBM28 4 822 0.006811989 0.0011926949 2.513851 AGUAGA,GUGUAG,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PUM2 8 1890 0.012261580 0.0027404447 2.161663 GUAAAU,GUAGAU,UAAAUA,UGUAAA,UGUACA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SNRPB2 3 991 0.005449591 0.0014376103 1.922475 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 3 999 0.005449591 0.0014492040 1.910887 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
MSI1 10 2770 0.014986376 0.0040157442 1.899912 AGGAAG,AGUAAG,AGUUAG,AGUUGG,UAGGAA,UAGUAA,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZFP36L2 4 1277 0.006811989 0.0018520827 1.878928 UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 4 1318 0.006811989 0.0019115000 1.833371 AUACUU,UACUUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
EIF4B 3 1179 0.005449591 0.0017100607 1.672101 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
IFIH1 2 904 0.004087193 0.0013115296 1.639860 GGCCCU,GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
PABPC4 3 1251 0.005449591 0.0018144033 1.586653 AAAAAA,AAAAAG AAAAAA,AAAAAG
ERI1 1 632 0.002724796 0.0009173461 1.570610 UUCAGA UUCAGA,UUUCAG
ELAVL3 8 2867 0.012261580 0.0041563169 1.560767 AUUUUA,UAUUUA,UAUUUU,UUAUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ACO1 3 1283 0.005449591 0.0018607779 1.550242 CAGUGA,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM24 6 2357 0.009536785 0.0034172229 1.480679 AGAGUG,GAGUGG,GUGUGA,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
KHDRBS3 9 3429 0.013623978 0.0049707696 1.454607 AAAUAA,AAUAAA,AUAAAA,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CELF5 3 1415 0.005449591 0.0020520728 1.409066 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MATR3 1 739 0.002724796 0.0010724109 1.345290 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
KHDRBS2 4 1858 0.006811989 0.0026940701 1.338289 AAUAAA,AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CELF6 7 2997 0.010899183 0.0043447134 1.326887 GUGAUG,GUGGGG,GUGUGG,UGUGAU,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZCRB1 3 1605 0.005449591 0.0023274215 1.227415 GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPD 6 2837 0.009536785 0.0041128408 1.213368 AAAAAA,UAUUUA,UUAGGA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
IGHMBP2 1 813 0.002724796 0.0011796520 1.207787 AAAAAA AAAAAA
SSB 2 1260 0.004087193 0.0018274462 1.161282 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ELAVL1 12 5554 0.017711172 0.0080503280 1.137540 UAUUUA,UAUUUU,UGAUUU,UGGUUU,UUAGUU,UUAUUU,UUGAUU,UUUGGU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZNF638 3 1773 0.005449591 0.0025708878 1.083881 GGUUCU,GUUCUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPC1 9 4443 0.013623978 0.0064402624 1.080957 AAAAAA,ACAAAC,ACAAAU,AGAAAA,CAAACC,CAAAUA,CUAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF4 3 1782 0.005449591 0.0025839306 1.076581 GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 3 1782 0.005449591 0.0025839306 1.076581 AAAGAC,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ZRANB2 6 3173 0.009536785 0.0045997733 1.051940 AAAGGU,AGGUAU,GGUAAA,GUAAAG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM46 9 4554 0.013623978 0.0066011240 1.045364 AAUCAU,AAUGAU,AUCAUU,AUGAAG,AUGAUA,AUGAUG,GAUCAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
AGO2 3 1830 0.005449591 0.0026534924 1.038256 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
DAZAP1 12 5964 0.017711172 0.0086445016 1.034805 AAAAAA,AGGAAG,AGUAAA,AGUAAG,AGUUAG,AGUUUG,UAGGAA,UAGUAA,UAGUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GAAUUA AAUUAA,AUUUAA,GACUUA,GGCUUA
ESRP2 2 14 0.13636364 0.0009824469 7.116864 GGGAAU,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA
TRA2B 1 51 0.09090909 0.0034058161 4.738352 GAAUUA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
HNRNPF 2 90 0.13636364 0.0059601782 4.515960 GGGAAU,UGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH3 1 61 0.09090909 0.0040607807 4.484596 GGGAAU AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 1 80 0.09090909 0.0053052135 4.098942 GGGAAU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 GGGAAU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SFPQ 1 153 0.09090909 0.0100864553 3.172005 CUGGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF2 1 479 0.09090909 0.0314383023 1.531901 GGGAAU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 3 216 0.009523810 0.001093309 3.122837 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 3 217 0.009523810 0.001098347 3.116204 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SNRNP70 3 253 0.009523810 0.001279726 2.895704 AAUCAA,AUCAAG,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
AKAP1 2 221 0.007142857 0.001118501 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
TUT1 2 230 0.007142857 0.001163845 2.617602 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
IGHMBP2 3 350 0.009523810 0.001768440 2.429061 AAAAAA AAAAAA
YBX2 2 263 0.007142857 0.001330109 2.424957 ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.001566909 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 6 777 0.016666667 0.003919790 2.088117 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
IGF2BP3 11 1348 0.028571429 0.006796655 2.071676 AAAAAC,AAAACA,AAAAUC,AAAUAC,AACACA,AAUACA,ACACAC,CAAUCA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBMS3 4 562 0.011904762 0.002836558 2.069326 AUAUAG,AUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPC4 3 462 0.009523810 0.002332729 2.029520 AAAAAA AAAAAA,AAAAAG
RBM41 3 502 0.009523810 0.002534260 1.909974 AUACAU,UACAUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 3 505 0.009523810 0.002549375 1.901395 CUGUUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZCRB1 4 666 0.011904762 0.003360540 1.824774 GAAUUA,GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGF2BP2 15 2163 0.038095238 0.010902862 1.804904 AAAAAC,AAAACA,AAAAUC,AAAUAC,AACACA,AAUACA,ACACAC,CAACAC,CAAUCA,CAAUUC,CACACA,GCAAUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
HNRNPL 9 1419 0.023809524 0.007154373 1.734641 AAAUAC,AACACA,AAUACA,ACACAC,CACAAC,CACACA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBFOX1 1 287 0.004761905 0.001451028 1.714464 AGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
AGO2 3 677 0.009523810 0.003415961 1.479247 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPAB 1 351 0.004761905 0.001773478 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM3 2 541 0.007142857 0.002730754 1.387202 AAAACU,AAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC1 6 1321 0.016666667 0.006660621 1.323237 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPC5 2 596 0.007142857 0.003007860 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NELFE 4 1059 0.011904762 0.005340588 1.156468 CUGGUU,GUCUCU,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SF1 5 1294 0.014285714 0.006524587 1.130615 ACUUAU,AGUAAG,CACAGA,CAGUCA,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ELAVL2 44 9826 0.107142857 0.049511286 1.113706 AUUAUU,AUUUAG,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,GUUUUA,UAAGUU,UAUAUA,UAUGUU,UAUUUU,UCUUUU,UGAUUU,UUAAGU,UUACUU,UUAUAC,UUAUAU,UUAUGU,UUAUUU,UUCAUU,UUCUUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAUA,UUUAUG,UUUCUU,UUUUAA,UUUUAU,UUUUUA AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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