ENSG00000163468:-:1:156333546:156335888

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000163468:-:1:156333546:156335888 ENSG00000163468 ENST00000368262 - 1 156333547 156335888 273 GCCAGAACACAAAGCGUGAAUCCGGAAGAAAAGUUCAAUCUGGAAACAUCAAUGCUGCCAAGACUAUUGCAGAUAUCAUCCGAACAUGUUUGGGACCCAAGUCCAUGAUGAAGAUGCUUUUGGACCCAAUGGGAGGCAUUGUGAUGACCAAUGAUGGCAAUGCCAUUCUUCGAGAGAUUCAAGUCCAGCAUCCAGCGGCCAAGUCCAUGAUCGAAAUUAGCCGGACCCAGGAUGAAGAGGUUGGAGAUGGGACCACAUCAGUAAUUAUUCUUGGCCAGAACACAAAGCGUGAAUCCGGAAGAAAAGUUCAAUCUGGAAACAUC circ
ENSG00000163468:-:1:156333546:156335888 ENSG00000163468 ENST00000368262 - 1 156333547 156335888 22 AAUUAUUCUUGGCCAGAACACA bsj
ENSG00000163468:-:1:156333546:156335888 ENSG00000163468 ENST00000368262 - 1 156335879 156336088 210 UAAGGACAUAUGUUUACAGUUUUUUGAGAUAUGGUUGACAUAUAAUAAACUGCACUUAUUUAAAGUGUAGAGUUUGAUAAGCUUUGCUCUGUGGAUAUACCAUGAAACCUGCAUUCUUAUUUUUCAAAGACGGGGAAAUAAAUAGCUUGUGUACGAUGGGGCAGUCCUGGGCUGUUGACUUGUGUUUUUGUCUAUUUUAGGCCAGAACAC ie_up
ENSG00000163468:-:1:156333546:156335888 ENSG00000163468 ENST00000368262 - 1 156333347 156333556 210 AUUAUUCUUGGUAAGAGGAGAAUAAGAGGUUGAUAAGGAAAAAUUAGAAGUAACACCUGUGUCAUAUUUUAAGAAGGAAAUUCUGUUACAGAUCCACUAAUUACAGAUAUUUAAAUAGCUUAUUGGUUAUUUUCUAUGUAUUCUCUCCAGUUGGGUAUAAAACAUUUAUAUGAAUAGGGUGAGCUAUGCAAAUCUGGCUGAUAAACUAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 1 453 0.007326007 0.0006579386 3.477002 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.007326007 0.0007101099 3.366913 CAAGAC ACAAGA,CAAGAC
SNRPB2 3 991 0.014652015 0.0014376103 3.349354 AUUGCA,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
SNRNP70 3 1237 0.014652015 0.0017941145 3.029755 AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM6 2 1054 0.010989011 0.0015289102 2.845486 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
YBX2 3 1480 0.014652015 0.0021462711 2.771195 AACAUC,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
EIF4B 2 1179 0.010989011 0.0017100607 2.683942 GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
A1CF 3 1642 0.014652015 0.0023810421 2.621434 AUCAGU,UAAUUA,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM46 8 4554 0.032967033 0.0066011240 2.320240 AAUGAU,AUCAAU,AUGAAG,AUGAUG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZC3H10 1 1053 0.007326007 0.0015274610 2.261892 CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
G3BP2 2 1644 0.010989011 0.0023839405 2.204641 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPA3 2 2140 0.010989011 0.0031027457 1.824444 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 2 2152 0.010989011 0.0031201361 1.816381 AAGACU,AGACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
YBX1 8 7119 0.032967033 0.0103183321 1.675814 AACAUC,ACAUCA,ACCACA,AUCAUC,CCAGCA,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
PABPC5 2 2400 0.010989011 0.0034795387 1.659094 AGAAAA,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZNF638 1 1773 0.007326007 0.0025708878 1.510760 GGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPAB 1 1782 0.007326007 0.0025839306 1.503460 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CSTF2 1 1967 0.007326007 0.0028520334 1.361036 UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF6 2 2997 0.010989011 0.0043447134 1.338729 GUGAUG,UGUGAU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
NOVA2 3 4013 0.014652015 0.0058171047 1.332726 AGGCAU,AUCAUC,GAGGCA AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPL 4 5085 0.018315018 0.0073706513 1.313163 AACACA,ACACAA,ACCACA,CACAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
CELF1 1 2391 0.007326007 0.0034664959 1.079549 UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SRSF4 2 3740 0.010989011 0.0054214720 1.019305 GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 AUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AAAGAC,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS2 7 1051 0.019047619 0.0053002821 1.845470 AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
TRA2B 10 1447 0.026190476 0.0072954454 1.843974 AAGAAG,AAGGAA,AAUAAG,AGAAGG,AGGAAA,AUAAGA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBMX 9 1316 0.023809524 0.0066354293 1.843277 AAGAAG,AAGGAA,AAGUAA,AAGUGU,AGAAGG,AGUAAC,GAAGGA,GUAACA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
KHDRBS3 11 1646 0.028571429 0.0082980653 1.783726 AAAUAA,AAUAAA,AUAAAA,AUAAAC,GAUAAA,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
QKI 5 904 0.014285714 0.0045596534 1.647577 ACUAAU,ACUUAU,CACUAA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AGAUAU,AUUUAU,UAUUUA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA2B1 11 2033 0.028571429 0.0102478839 1.479247 AAGAAG,AAGGAA,AGAUAU,AUAGGG,AUUUAA,GAAGGA,UAGGGU,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAACUA,AAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PUM2 3 764 0.009523810 0.0038542926 1.305073 UAAAUA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUGGCU,UCUCUC,UCUGGC,UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CELF2 3 881 0.009523810 0.0044437727 1.099754 UAUGUU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PPIE 41 9262 0.100000000 0.0466696896 1.099442 AAAAAU,AAAAUU,AAAUAA,AAAUUA,AAUAAA,AUAAAA,AUAAAU,AUAAUA,AUAUAA,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAUA,UAAUAA,UAAUUA,UAUAAA,UAUAAU,UAUUUA,UAUUUU,UUAAAU,UUAUAU,UUAUUU,UUUAAA,UUUAUA,UUUUAA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AGUUUU,AUUUUA,AUUUUC,AUUUUU,CAGUUU,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUUAA,UUUUCA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAAG,AAGAGG,AGAGGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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