ENSG00000242259_ENSG00000070010:-:22:19447377:19458139

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000242259_ENSG00000070010:-:22:19447377:19458139 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19447378 19458139 3602 AUCUACGAACUGCGUGUGAUGGAGACCAAACCCGACAAGGCAGUGUCCAUCAUUGAGUGUGACAUGAACGUGGACUUUGAUGCUCCCCUGGGCUACAAAGAACCCGAAAGACAAGUCCAGCAUGAGGAGUCGACAGAAGGUGAAGCCGACCACAGUGGCUAUGCUGGAGAGCUGGGCUUCCGCGCUUUCUCUGGAUCUGGCAAUAGACUGGAUGGAAAGAAGAAAGGGGUAGAGCCCAGCCCCUCCCCAAUCAAGCCUGGAGAUAUUAAAAGAGGAAUUCCCAAUUAUGAAUUUAAACUUGGUAAGAUAACUUUCAUCAGAAAUUCACGUCCCCUUGUCAAAAAGGUUGAAGAGGAUGAAGCUGGAGGCAGAUUCGUCGCUUUCUCUGGAGAAGGACAGUCAUUGCGUAAAAAGGGAAGAAAGCCCUAAGUGAGGACUGUUGGCUGAUUGGAAAAUAAUAAAAGAAUCAUUUGCAACAUCUUGGCUUUUAGUUACUGGCACUGACAGGGACGAGCCUCAUCAGAGAAUACUCUGUUACUUAAGAUUUAUUUAGAGUUACCUAAGAAUUAUUAAGUUUGACUUGGAAGUGGAGCAGCAGGACUUUGUAGUUGUAUGCUUGAUUUGGGGAAAGACAAAGAGCUGUCCCUGAGGGCCUGUAGAUAGCUGCCUCCUCACCUCUUCACGCUUUCAGCUUGAGGGGAGCUCCCACUGCCUCAGCAGGAGCAAUUCUGCAUCCCUAAUUCUGUCAAAACCUAUGAAGGUGACUAAAUUGUCUAACAUGAAGUGUUCUUUCUUUUUCUUCAUUUAUCCUUUCUUUUCCUACAUCAAUUGCAUAGGUGUCAGUCUUUGGCCUAAAAAAAGGCUUUAAAUAGACAUGUGUUCUAUAAGUAGUGGCUGUCCCACUACUGUGGCUGCAAUUUAAGUAUUUGACAAAGAAUGUUUCUAUUUUUAUUUUACAUAUUUUUUUCAAAAACACCACUCAGAAGAACCUGAUCUGAAUGAGUUUGCACUUUUAUUCUCAUUUCAUAUGGACAUAACUGGCUCCUUAGUGAACCUGUUCAUAGUGAAACAACUCCAUGGAGAAGCAAACAUGUGAAUGUUAGAAUGAACAAAUGCUAAAGAGAUGUUCCUCUCCUUCUUCCCUACUCCCCAACUCCCAAUUUUAAUUUAUUAAAUCAUCCAAGCUUCUGCUGGCCUGUAUUUUUUAUCAGUAUUUAUUUGGUCUUAGAUCUUCACUUUCUAUAACGUGAGAUCUUUUGACAUGCUAAUCUGAUUAUUUUAAAUUUGUUCCCAUGAGCCACUGUGCCUGGCCCCAUUGGGAAUAAUUCUAAGCCAAGAAUUUCAAGUAAAAACAGGCAAUAACUAAAGCCUAAAUCUAAAUGUUUGAUUAGGUACUAACACAGACUGGUGGUUGGGCCUCUGACCAUAACUGAAGGCCUGUUGGCAGGUGCUCCGUGUUCCAUCUCACCAUUAGAAAAGUGUCCCUCUGGGGCUUCUCCUGGAGAAAGUAGGAAGAAACAAGGCUGCCUGAUCCCUAGGUGGCAAUGGCUAAGCCCAGCAGGGUCCCCCAUGAGCCAGGGCUAACCCUGCUUCCAGACAUGGGGGUCCUGCCCUGGUCAGGGCCCCUCCAACACUCCAGAGAGGAGAGAAUGGUGGCCCCAGGGUCUAUCCACGUCUUCAGUGAAGAGUGUCUAUGAGUGUCAUGAUGUUCAGUACUUGGCCUGUGGCACAAACCAUCAUCACUGGAAAUGGGCGUGGUUUUGGAAGGCAUGAGCACUGUGGGGACUUACCUGAGCCUCCACUGACAAAGUCUCAGUUUUACUAGCAGAGGGAGAAACCCUUGGUGGGUAGACAGCCUUCAUUUGCAGGAUCACAUCAGCUAACAGACUGUCACUUUAUGCAUAAUGAAGAAUGUUACAGUACCUCUGGCUCUGGGUUUUUGUCUUCACUAAGCAACACCUGCUGUGUAUGCAGUGAAACGCCUGGUCCUUUGCUGGAGGCACACUCCCCUGCCUGGACCAGGAUGGAUUCCAUUGCAGAGCCUUUUAAUGACACAGUGGGGCCAGUUGGAGCACUGAUCCUGGUCAUUACUCCUGCACCCUGGCCUGCAGCCUUCCUCUCAGUGUCUUAUUUGGGCUUGGUCCUUGAGCCGGCUGCCUCAACAGCAGGACCCCUGGUAAAACUGCAGCUUUCUGAUCCACCUCCAGGGAGUCUGUCCCAGUGUCAUUCCUGGGACUGGCCCAGCAGUCCCAGGAUUUGUAUCAGUGGAUACUGAGGAUUUGUUAUCAGUGAAGUGGGAGAACCGCAGCAUAGGUACUGCAGGGCGUUUCUGCAAGCCCACCAGCCUCCUCUUUACUUGCCUUUGUUGCCUCUUGUGCAUUGCUCCUUUUUAUAAACGUCCCAGCCAGGCACUGGCGCUCCGCCUAUAAUCCUAGCACUUUGGGAGGCCAAAGUGAGAGGGUCGCUUGAGGCCAAACUAGCCUGGGUAACUUAGCAAGACCCCAUCUUUACAAAAAAAAAAAAAAAAAAUUAAAAAUUAGCCUGGUGAGGCUGUGCAUGCUUUUGGUCCCAGCUGUUCGGAGUCCAGGAGUUUGAGGUUGCAGUAAGCCAUGAACACGCCACGCCACUGCACUAAGCCUGGGUGACACAGCAAGACCCUGUCUCGAAAAAUGAAUAAGGUAAAUGUUACAUGUCUCCCGCACCCUUAGAAUAGAACUACAGACAUCCAAGCCACUCCUACCCCGCUCACCCCUGCUACACACCGCCUCCAUACCUUUGACCGGCCUAUGGCUGUACUCGGAUUGCAUUCUCAGCCUCCACUUCAAGCCUGCGUUCCCUGGGGAGGUCAUUCAACCCUAGAUCCACCAUAUGUCAUGCCCAACCAAUCUCAGUUACUUUGCGAGUUCACCUCCAUCCUGAGUGGACGCUCAAGCAAGACUGCUGGAGCUGCAGAUCUGGGAGGUUCGCUGCACCACCUUGAUGCUCAGUAUGUACUUUUGAAAAUAUACCGGAUUGUUGAGAUUUGAGAAAAUCUCAUAAAGCUGCUGAAAAGAACUGGCCAGAGCCGUGUGAUUUGAGAGGCGGCUGACGUAAGGUAGCUGCGCGGCCCAGGAUGCCCGCCUGGCCCGGGGUGAAUGGCGCUGUCGUCGCGGUGGUCGCGUAGGCUUCGCGCCAGGUCUCGCCCCGGAUUUACCCUGCGACCCCGGCCCUCCGCGCGCGCCGCAGCCGCCCUCGGUUGCUAUUGGUUGCUCGUCCUGUUUGUCGGCGCUUCUCGAAGAAGGGGGCGAAGACGUGAUUGAAUGUGUCGGUGCUCAUUAGUUCUUCUGUCAGUCGAUCACGAGGUGCCGUUUUCUUCAUUUUUCAUUGGCUGGCGGACUGAGGGGCGGGCUUGGCGCGCCGGUCGCCCAGACAUGGCGGACGGCAGCGGCUGGCAGCCGCCGCGCCCCUGCGAGGCCUACCGCGCCGAGUGGAAGCUCUGCCGCAGCGCCAGGCACUUCCUACACCACUACUACGUCCACGGCGAGCGGCCGGCCUGCGAACAGUGGCAGCGCGACCUGGCCAGCUGCCGCGACUGGGAGGAGCGCCGGAACGCCGAGGCCCAGAUCUACGAACUGCGUGUGAUGGAGACCAAACCCGACAAGGCAGUGUCCAU circ
ENSG00000242259_ENSG00000070010:-:22:19447377:19458139 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19447378 19458139 22 CCGAGGCCCAGAUCUACGAACU bsj
ENSG00000242259_ENSG00000070010:-:22:19447377:19458139 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19458130 19458339 210 CAGCAUCUCUUCAGCGAUGGGCACAGGGCAGCCUGUCCCUUAUGGCAGUGUUGUCACAGCAAGAAGUGCAGCUGUAGGUUGUGUCAUGGGCAUGAAUGCUGUGUCAUUCGCAGGAGCCAGUAGAGCCACAGUAACAUGGACAGCGACAGCUCCAGUGCUGCCAGGAAACCAUCCAACUGAUUUCUGUGUUUGCCCCACAGAUCUACGAAC ie_up
ENSG00000242259_ENSG00000070010:-:22:19447377:19458139 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19447178 19447387 210 CGAGGCCCAGGUGCGCCGGGAGGGAGCGGGGCGGCGCUUCGGAGCGCCUUGCGGGGCCCAGCUUUCCCCACCCCUCCACGCCCCAUGCCCCGCGACCUAGCCGGGGACUGACGGGGUCCCUAUCCUCCUCACGCUUCCUUUCUUUUGAGAGAUUGUGUAAAUUAGCAUAUCAACAGGACUUUCAGAGGGCGUGAAAGACAAAGGAGGAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 3 71 0.0011104942 0.0001043427 3.411800 GCGCGC GCGCGC
RBM14 12 478 0.0036091061 0.0006941687 2.378283 CGCGCC,CGCGCG,CGCGGC,GCGCGC,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
OAS1 1 77 0.0005552471 0.0001130379 2.296323 GCAUAA GCAUAA
PPRC1 16 780 0.0047196002 0.0011318283 2.060010 CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBM8A 12 611 0.0036091061 0.0008869128 2.024777 CGCGCC,CGCGCG,CGCGCU,GCGCGC,UGCGCG ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
IGHMBP2 15 813 0.0044419767 0.0011796520 1.912840 AAAAAA AAAAAA
PABPC4 18 1251 0.0052748473 0.0018144033 1.539634 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM42 5 407 0.0016657413 0.0005912752 1.494263 AACUAA,AACUAC,ACUAAG,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPD 37 2837 0.0105496946 0.0041128408 1.358994 AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZFP36L2 16 1277 0.0047196002 0.0018520827 1.349516 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA0 5 453 0.0016657413 0.0006579386 1.340139 AAUUUA,AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
SRP14 9 847 0.0027762354 0.0012289250 1.175733 CCUGUA,CGCCUG,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
SYNCRIP 18 1634 0.0052748473 0.0023694485 1.154578 AAAAAA,UUUUUU AAAAAA,UUUUUU
NXF1 2 286 0.0008328706 0.0004159215 1.001781 AACCUG AACCUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF7 1 128 0.09090909 0.008449044 3.427565 AGAUCU AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF2 1 479 0.09090909 0.031438302 1.531901 CCAGAU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZC3H10 5 140 0.014285714 0.0007103990 4.329800 CAGCGA,GAGCGC,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM8A 2 84 0.007142857 0.0004282547 4.059960 GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
HNRNPAB 5 351 0.014285714 0.0017734784 3.009919 AAAGAC,AAGACA,ACAAAG,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PPRC1 1 127 0.004761905 0.0006449012 2.884389 CGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SRP14 2 218 0.007142857 0.0011033857 2.694564 CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA3 3 349 0.009523810 0.0017634019 2.433177 AAGGAG,AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
FXR2 5 730 0.014285714 0.0036829907 1.955624 AGACAA,GACAAA,GACGGG,GGACAG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CELF1 7 1097 0.019047619 0.0055320435 1.783726 GUGUUG,GUUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SF1 7 1294 0.019047619 0.0065245869 1.545652 ACGAAC,ACUGAC,AGUAAC,CACAGA,GCUGCC,UACGAA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUG,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
G3BP1 18 3431 0.045238095 0.0172914148 1.387482 ACCCCU,ACGCCC,AGGCCC,CACAGG,CACGCC,CCACAG,CCACCC,CCACGC,CCAUCC,CCCACA,CCCACC,CCCAGG,CCCCAC,CCCCGC,CCCCUC,CCCUCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAGACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUG,GUGUUU,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SRSF10 13 2937 0.033333333 0.0148024990 1.171125 AAAGAC,AAAGGA,AAGAAG,AAGACA,AAGGAG,ACAAAG,AGACAA,AGAGGG,GAAAGA,GACAAA,GAGAGA,GAGGAG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AAAGGA,AAGAAG,AGAGAU,AGAUCU,CUACGA,CUCUUC,GACAAA,GAGAGA,UCAACA,UCUUCA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
LIN28A 3 900 0.009523810 0.0045395002 1.069005 AGGAGA,GGAGGA,GGAGGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,CAACAG,CACAGA,CACAGC,CGCAGG,UGCAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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