ENSG00000112290:-:6:110127468:110127629

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000112290:-:6:110127468:110127629 ENSG00000112290 ENST00000392588 - 6 110127469 110127629 161 GUGAACUGGCACAAAGGUUAAUCUCAAGAUGCCGCUAGUGAAAAGAAACAUCGAUCCUAGGCACUUGUGCCACACAGCACUGCCUAGAGGCAUUAAGAAUGAACUGGAAUGUGUAACCAAUAUUUCCUUGGCAAAUAUAAUUAGACAACUAAGUAGCCUAAGUGAACUGGCACAAAGGUUAAUCUCAAGAUGCCGCUAGUGAAAAGAAACA circ
ENSG00000112290:-:6:110127468:110127629 ENSG00000112290 ENST00000392588 - 6 110127469 110127629 22 AAGUAGCCUAAGUGAACUGGCA bsj
ENSG00000112290:-:6:110127468:110127629 ENSG00000112290 ENST00000392588 - 6 110127620 110127829 210 GGCUGAGGAGGAAGAGGAGGGGUUUGUCCUGCUGUCUCAGGGAGGCAGAGAGGGAAGAAAAUCCACCAGUAAGUGGACCCAGGCAGUUCAAAUCCAUGUUGUUCAAGGGUCAACAGUGCUUUAUUCUUCAAUGAAAAAUAAAGUCUCAUUCUGUGUUGGCUGAAAUUUAAUAUUGUUAAUUUAUUUUUGAUUUCCUACAGGUGAACUGGC ie_up
ENSG00000112290:-:6:110127468:110127629 ENSG00000112290 ENST00000392588 - 6 110127269 110127478 210 AGUAGCCUAAGUAAGUAUAUAUCAAUUAAAAAUAUACUCACAAACCAGAAUGUUAUGCUUUAGCGUAUUAAGAAGUUGUGCUUCUGAUUAAUUUGGGAGUAUGAUUUGGUGAGAAGAGUACAAAAUUAUCCUGAAAAAUAUAGUCACAUGAGUAUAAUUAUUGAGUUUUACAAGAACCUCUUCUGCAUGAUGUUUCUUCUGGGAAAGGAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 407 0.01863354 0.0005912752 4.977928 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
YBX2 3 1480 0.02484472 0.0021462711 3.533035 AACAUC,ACAACU,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
A1CF 2 1642 0.01863354 0.0023810421 2.968237 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPAB 2 1782 0.01863354 0.0025839306 2.850263 ACAAAG,AGACAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 1222 0.01242236 0.0017723764 2.809182 AAAAGA AAAAGA,AGAAGA
RBMS3 1 1283 0.01242236 0.0018607779 2.738962 AAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TARDBP 3 2654 0.02484472 0.0038476365 2.690895 GAAUGA,GAAUGU,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPDL 12 8759 0.08074534 0.0126950266 2.669116 AACUAA,ACAGCA,ACUAAG,AGUAGC,CUAAGU,CUAGAG,CUAGGC,GCUAGU,GUAGCC,UAAGUA,UAGGCA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
CELF2 1 1886 0.01242236 0.0027346479 2.183512 AUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
NOVA2 3 4013 0.02484472 0.0058171047 2.094566 AGGCAU,CCUAGA,GAGGCA AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ZRANB2 2 3173 0.01863354 0.0045997733 2.018267 AAAGGU,AGGUUA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPLL 2 3534 0.01863354 0.0051229360 1.862859 CACACA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
SAMD4A 2 3992 0.01863354 0.0057866714 1.687096 CUGGAA,CUGGCA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
RBM4 1 3065 0.01242236 0.0044432593 1.483249 UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ENOX1 1 3195 0.01242236 0.0046316558 1.423339 UAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPL 2 5085 0.01863354 0.0073706513 1.338038 CACAAA,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
FXR2 1 3434 0.01242236 0.0049780156 1.319297 AGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
YBX1 3 7119 0.02484472 0.0103183321 1.267730 AACAUC,ACAUCG,CCACAC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
TRA2B 3 7329 0.02484472 0.0106226650 1.225794 AAAGAA,AAGAAU,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPH3 3 7688 0.02484472 0.0111429292 1.156811 AAUGUG,GAAUGU,GGAAUG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
PPIE 8 18315 0.05590062 0.0265436196 1.074499 AAAUAU,AAUAUA,AAUAUU,AUAAUU,AUAUAA,AUAUUU,UAAUUA,UAUAAU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPDL 1 35 0.09090909 0.002357873 5.268867 CUAAGU AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AGUGAA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAC,AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
SNRNP70 3 253 0.009523810 0.0012797259 2.895704 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRSF4 7 558 0.019047619 0.0028164047 2.757684 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AAUAUA,AUAUAG,AUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
A1CF 6 598 0.016666667 0.0030179363 2.465331 AGUAUA,AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
NONO 3 364 0.009523810 0.0018389762 2.372636 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TRA2A 10 1133 0.026190476 0.0057134220 2.196615 AAGAAA,AAGAAG,AAGAGG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RC3H1 5 631 0.014285714 0.0031841999 2.165570 CUUCUG,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
AGO2 4 677 0.011904762 0.0034159613 1.801175 AGUGCU,GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CELF1 6 1097 0.016666667 0.0055320435 1.591081 CUGUCU,GUGUUG,GUUGUG,GUUUGU,UGUGUU,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SRSF5 9 1578 0.023809524 0.0079554615 1.581521 AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,GAAGAA,GAGGAA,GGAAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGGAAG,AGGAGG,AGUAAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUGUU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,AUUUAA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGU,GUUGUG,GUUGUU,UUGUGC,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAGAAC,AAGAAG,AAGGAA,AGAAGA,AGGAAG,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAA,AUCAAU,AUGAAA,AUGAUG,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGAAG,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
SRSF10 15 2937 0.038095238 0.0148024990 1.363770 AAAGGA,AAGAAA,AAGAAG,AAGAGG,AAGGAA,AGAGAG,AGAGGA,AGAGGG,GAGAAG,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 ACAAAC,AGAAAA,CAAACC,CAAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SART3 3 777 0.009523810 0.0039197904 1.280762 AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PPIE 46 9262 0.111904762 0.0466696896 1.261714 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AUAAUU,AUAUAU,AUUAAA,AUUAAU,AUUAUU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAUAU,UAAUUA,UAAUUU,UAUAAU,UAUAUA,UAUUAA,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUUU,UUUAAU,UUUAUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAUUUA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AAAGGA,AAGAAG,AGAAGA,AGAGAG,AGAGGA,AGGAAG,CAGAGA,CUCUUC,GAAGAA,GAGGAA,UCAACA,UCUUCA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AAUUUA,ACCAGA,AGUAGC,CACCAG,CUAAGU,CUUUAG,GGAGUA,GUAGCC,UAAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGGA,GGAGGG,GGAGUA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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