ENSG00000060749:+:11:32927156:32935435

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000060749:+:11:32927156:32935435 ENSG00000060749 ENST00000650167 + 11 32927157 32935435 3968 UUUAAGCUAUGAAGAAGGACAUCCCUCACACUCUGAAACAGAUCUCCUUCAGAGACAGAGUUUUGCAGCCUCUCAUCAGCUUCCUGGAUAUGCUCCCACACCUCAGCCUACUGGUCUUUCUGGAAUAUUUGAUACUAGUGUGAACAGUGCCAGCAGUAACACUAAAGAGUCUUCAGUGAUGAAUUUUCUGUCUACUGCUGAAUCCCGAACUGCUCAGGCUGCUGCUUCAGGAACUACUCUCUUACCACAAUUCAGGGCUCCAUCCUGGCAGACAGGCAUGCAUUCCUCAGCAGCAACUGAGCUGUUUGCUACUGGACCUUUGCCAAGCACUGGAACACUUCCACCAUCUCUCUCUGCUUAUCAGCAUCCCACCACCUUCAGCAAUAGAAACUUUGCUACCACUUCACCUUUGGUGCUUCAGGAUUCAACUUUUAACACUACAUCAAAUGGAAUUUUAAGUCAUCAUGACCCUUUGCUACAAAUCAAGACUUCCCAGGGAACUGUUCCAACUGCUUUGGCAUUUGAGCGCCUGGGCAGUUCUGUAUUAAGUAACAGCAUACCACCUCAGUCUUCAACAUACCGCUCAGCUCAAGAGUCUGCACCCCAUCUUUUACAACCUCAAUUUAGUUUGUUGCCUUCAGCACUUGGGGGAUCCCAGCAGACUCCUCAAGCCUACAGUUCAACUCUCUUUACUAGUUCUACUGCUUCCAUUGAAAGAGCUCUUCUUCGAGAAUGUAGUGUUAUUAAACACCAUCAGCGGCCUUCAGGUACCCAGUCAAUUCAGGCACAACUGACUGGUUCACAGCACUCCUUACAUAGUUAUCUAUCAAAUUCAAGUGUAGUUAAUUUUCAGGAAACAACCAGGCAGUCAUCUUUAUCCUGUAGCCCAAUUGGAGAUUCCACUCAGGUGAGCAACGGAGGAUUACAACAGAAGACCUCCCAGGUCUCAGUGGAACUUGCUCAGUCUUACUCAUCUGCGAUUCCAUCAUCAGGGUAUCCUCCUUCUACUACAAAAAUAAAAAGCUGUUCUACAGAACAACCACUGACAUCAACCAAGACCCCUAAACCUCAAAGUAUAAUUCCUCCUGUGCAAACACUAAGCUAUUCCAAACCUUUACAUAAUCAGAGUUCUGUAAUAUCGGGCCAAGCACAAAUUUAUUCUACAGCGCAGCUACCAAGCCUUUUAUCAGUUAGUCAGUCCCAAAAUUACGGUUUAGUACAGCCACAUAAUGUGCCAUCUAUUGUUCAUUCACAGGUUUAUAGGUCCAGCAAGGUUGAGAAAUUGCCACCCUUGUAUAAAACAUUGACUUUUUCUGGGUCAUCUCAGACUGUAACUCCUGAAAAUCAGACGCUUAAUUAUUCAUCUAAUCAGCAAGAGGUAUUGUCUUCAGUUACAAAUGAGAAUUACCCUGCUCAAACAAGAGAUCUGUCUUCAGUAAGUCAGUCUCAAAGUUACUCAUCUGGUCACUCUCAGGGUUUAUCACCAGUUAGCCAGACACAGGUUAGCUAUUCAUCUCAAUCACAAGUUUUGUCAGUUGUUAGUCUUUCAGAAAGCUAUGCUUCAGGGGAGUCCCUAACAUUAACAGCCCCUUCUCUUUCUUAUUCUUCUGCCUCUCGGGCUCAGAAUUUGCCAGACUCUAGCCCGACCCAGAAUUAUAUUUCUAUGCAUUCUUCCCAAAAUGUUCAGACUCAAGAGUCAUCAUCUCCCCAGUCCCAGAAGUUUUUGCCUGCUGUCCAGUCAUCAUCUUUUGCAUCCUCUACUCAUUGUCAGACAUUACAAAAUAACAUAACUUCCCCUGACCCAAAGUCUUAUGCUGAAAGAAAGCUUGACUCAGAUGUGUAUCCAUCUUCAAAGCAAGAAGAUGGUUUUCCAAUGCAAGAGUUACAGGUGUUGCAGCCACAAGCAUCUCUUGAGUCAUCAACCCAAAGGCUAUCUGAUGGAGAAAUUAAUGCUCAAGAAUCAACUUAUAAGGUGUCAAAGGCAGAUGACAGAUAUUCUCAGAGUGUAAUCAGAAGUAAUUCCCGUCUUGAAGAUCAAGUUAUUGGGGUUGCUCUGCAAGCAUCAAAAAAAGAAGAAAGUGUUGUUGGUUCAGUGACACAACUUAACCAACAAAUUGGCCAAGUCAAUAAUGCAGCUACCCUUGAUCUUAAGAACUCAACUAAUUUAAUACAGACUCCACAAAUAAGGUUGAAUACUAAAGACUUAAAGCAGCAACAUCCUCUCAUACUUAAGGUGCAUGAGUCCAAGGUCCAGGAACAGCACGAUCAAAUAAUUAAUGCUUCAUCUCAGAUUCAAAUUCCAAAUCAUGCUUUAGGGCAUGGCCAUCAGGCAUCUCUUCCUAAUACACAGGUCCUUUUAGAUUCUGCCUGUGAUUUACAAAUUCUUCAGCAGUCAAUACUGCAGGCAGGUUUAGGUCAAGUAAAGGCAUCUUUACAAGCACAGCGUGUUCAAAGCCCUCAACAAAUAGUACAUCCCUUCCUUCAGAUGGAAGGUCAUGUUAUUCAAAGCAAUGGUGAUCAUUCUCAGCAGCAACUCCAUCCUCAAAAUUCUGAAGUUAUGAAAAUGGACCUCUCUGAGUCUUCAAAACCAUUACAACAACAUCUAACAACAAAGGGCCAUUUUAGUGAAACAAAUCAACAUGAUUCAAAGAAUCAGUUUGUUUCUCUUGGAUCGAUGUGUUUCCCAGAGGCAGUGCUUCUUAGUGAUGAAAGAAAUAUUUUAUCAAAUGUAGAUGAUAUCUUAGCAGCUACAGCAGCAGCUUGUGGAGUUACACCUACUGAUUUUUCCAAGUCAACUUCAAAUGAAACCAUGCAGGCUGUUGAAGAUGGUGAUUCUAAAUCUCAUUUUCAGCAGUCAUUAGAUGUCAGGCAUGUGACUUCAGAUUUUAACUCUAUGACAGCUACAGUAGGAAAGCCACAGAAUAUAAAUGAUACUUCCUUAAAUGGAAAUCAGGUUACUGUGAACCUUUCACCAGUACCUGCCCUUCAGUCAAAAAUGACUCUUGAUCAACAGCACAUUGAAACACCUGGUCAAAAUAUACCAACUAAAGUAACUUCAGCAGUGGUUGGACCAAGUCAUGAAGUCCAGGAGCAAAGUUCUGGCCCAUUCAAGAAACAGUCUGCUACCAAUCUUGAAUCUGAAGAAGACAGUGAAGCUCCUGUUGAUAGUACAUUAAAUAAUAACAGAAACCAAGAGUUUGUUUCUAGUAGUAGAAGUAUAAGUGGAGAGAAUGCUACAUCAGAGAGUGAAUUUACCUUAGGGGGUGACGACAGUGGUGUGUCAAUGAACCCAGCUAGGAGUGCACUUGCACUGUUGGCCAUGGCCCAAUCUGGGGAUGCAGUCAGUGUCAAGAUUGAAGAAGAAAACCAAGAUUUAAUGCAUUUUAACCUUCAAAAGAAAAGAGCUAAAGGAAAAGGGCAAGUUAAAGAGGAAGACAACAGUAAUCAGAAACAGCUGAAAAGACCUGCCCAAGGCAAACGCCAGAAUCCAAGGGGAACAGAUAUUUACUUACCGUAUACUCCUCCUUCCUCAGAAAGCUGCCAUGAUGGUUAUCAGCAUCAAGAAAAAAUGAGACAGAAGAUCAAAGAGGUGGAGGAAAAACAACCAGAAGUCAAAACAGGAUUUAUUGCUUCUUUCUUAGAUUUUCUGAAAUCCGGGCCCAAGCAGCAGUUUUCCACUCUUGCUGUACGAAUGCCUAACAGGACUAGACGGCCAGGGACCCAGAUGGUUCGUACAUUUUGUCCCCCACCACUUCCCAAGCCUUCAUCUACAACACCCACACCUUUAGUGUCUGAAACUGGCGGUAACAGUCCAUCAGAUAAAGUUGAUAAUGAACUUAAAAACUUGGAACAUUUAUCUUCAUUUUCUUCUGAUGAAGAUGAUCCUGGAUAUAGUCAAGAUGCUUAUAAAAGCGUCUCUACUCCCUUAACUACUUUGGAUGCUACUUCUGAUAAAAAGAAGAAAACAGUUUAAGCUAUGAAGAAGGACAUCCCUCACACUCUGAAACAGAUCUCCUUC circ
ENSG00000060749:+:11:32927156:32935435 ENSG00000060749 ENST00000650167 + 11 32927157 32935435 22 GAAGAAAACAGUUUAAGCUAUG bsj
ENSG00000060749:+:11:32927156:32935435 ENSG00000060749 ENST00000650167 + 11 32926957 32927166 210 GUAUUAUUUUUCUUACUAAUGCAUCUUAAAUAUAUUUCCUCCAUUGUGAUAGUAUUGUCAGACUGUGUUUGAUCCACGAAUCUAUAGGUCAGGAAAUUGGUCAAAGGUUUCUACUACUUUUAUAGUUGUUCUUCUAGAAGUUUUUUUUAUCAGAUGGUUUGGACUGUGUAUUUUGGUCACUGAUUUUUAAUGUCCUCUAGUUUAAGCUAU ie_up
ENSG00000060749:+:11:32927156:32935435 ENSG00000060749 ENST00000650167 + 11 32935426 32935635 210 AAGAAAACAGGUAAAGUUUUACAAUUUAGAUUCAUAAUUAUUACUUUCUUCUAUUUUUCCAGCUAUAGCCCACAUUUUAAGCUUUUUUCACUUAAAGCAGGUCUGCAAGUACAUUUUCAGGACAAAAUGUAUAGGUAGGUAUCUUAAGGACUUAUUUUUUAAAUUUUUCUUGCCUAUAGGAAAGGUCUAUGUUUUAGGUUAAGUAGUUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 5 267 0.001512097 0.0003883867 1.960985 CUCUCU CUCUCU
HNRNPA0 7 453 0.002016129 0.0006579386 1.615563 AAUUUA,AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
SNRNP70 20 1237 0.005292339 0.0017941145 1.560633 AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM25 3 268 0.001008065 0.0003898359 1.370649 AUCGGG,UCGGGC AUCGGG,CGGGCA,UCGGGC
RBM42 5 407 0.001512097 0.0005912752 1.354649 AACUAA,AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
ERI1 8 632 0.002268145 0.0009173461 1.305975 UUCAGA,UUUCAG UUCAGA,UUUCAG
QKI 38 2805 0.009828629 0.0040664663 1.273215 AAUCAU,ACACUA,ACUAAU,ACUCAU,ACUUAU,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZCRB1 21 1605 0.005544355 0.0023274215 1.252287 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUUA,GCUUAA,GGAUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
MATR3 9 739 0.002520161 0.0010724109 1.232658 AAUCUU,AUCUUA,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 19 1480 0.005040323 0.0021462711 1.231684 AACAAC,AACAUC,ACAACA,ACAACU,ACAUCA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CNOT4 3 314 0.001008065 0.0004564992 1.142904 GACAGA GACAGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GUUUAA AAUUAA,AUUUAA,GACUUA,GGCUUA
TIAL1 1 26 0.09090909 0.0017684045 5.683904 CAGUUU AAAUUU,AAUUUU,AGUUUU,AUUUUG,CAGUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUCAGU,UUUCAG
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 AGUUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 3 216 0.009523810 0.001093309 3.122837 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS3 6 562 0.016666667 0.002836558 2.554752 AAUAUA,AUAUAU,CUAUAG,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
U2AF2 10 1071 0.026190476 0.005401048 2.277731 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.002534260 2.231902 UACAUU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PABPC3 2 310 0.007142857 0.001566909 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPC 18 2006 0.045238095 0.010111850 2.161491 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 13 1487 0.033333333 0.007496977 2.152585 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
AKAP1 1 221 0.004761905 0.001118501 2.089973 AUAUAU AUAUAU,UAUAUA
RALY 9 1117 0.023809524 0.005632809 2.079612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZRANB2 11 1360 0.028571429 0.006857114 2.058900 AAAGGU,AGGUAA,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GGUAAA,GUAAAG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
EIF4B 1 226 0.004761905 0.001143692 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.001153769 2.045185 UUUCAG UUCAGA,UUUCAG
HNRNPCL1 11 1381 0.028571429 0.006962918 2.036809 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 5 691 0.014285714 0.003486497 2.034723 UUUUUU UUUUUU
DDX19B 5 691 0.014285714 0.003486497 2.034723 UUUUUU UUUUUU
EIF4A3 5 691 0.014285714 0.003486497 2.034723 UUUUUU UUUUUU
TIAL1 45 5597 0.109523810 0.028204353 1.957255 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
AGO1 1 283 0.004761905 0.001430875 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
TIA1 35 5140 0.085714286 0.025901854 1.726480 AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUA,GUUUUU,UAUUUU,UUAUUU,UUUUAU,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SNRPB2 1 288 0.004761905 0.001456066 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ELAVL2 66 9826 0.159523810 0.049511286 1.687942 AAUUUA,AAUUUU,AUAUUU,AUUAUU,AUUUAG,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUCU,CUUUUA,CUUUUU,GAUUUU,GUAUUG,GUUUUA,GUUUUU,UACUUU,UAUAUU,UAUGUU,UAUUAU,UAUUGU,UAUUUU,UGAUUU,UGUAUU,UUAAGU,UUACUU,UUAUUU,UUUAAG,UUUAAU,UUUAUA,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 12 1928 0.030952381 0.009718863 1.671191 AUUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
DAZAP1 18 2878 0.045238095 0.014505240 1.640964 AAUUUA,AGGAAA,AGGUAA,AGGUAG,AGGUUA,AGUUUA,UAGGAA,UAGGUA,UAGGUU,UAGUAU,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
MSI1 5 961 0.014285714 0.004846836 1.559458 AGGUAG,UAGGAA,UAGGUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZNF638 3 646 0.009523810 0.003259774 1.546767 GUUCUU,GUUGUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ELAVL4 17 2916 0.042857143 0.014696695 1.544044 GUAUCU,UAUUUU,UUAUUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ZCRB1 3 666 0.009523810 0.003360540 1.502846 ACUUAA,GACUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM28 1 340 0.004761905 0.001718057 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SYNCRIP 5 1041 0.014285714 0.005249899 1.444212 UUUUUU AAAAAA,UUUUUU
KHDRBS2 5 1051 0.014285714 0.005300282 1.430432 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPAB 1 351 0.004761905 0.001773478 1.424957 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS1 10 1945 0.026190476 0.009804514 1.417524 CAAAAU,GAAAAC,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
PTBP1 42 8003 0.102380952 0.040326481 1.344148 ACUUUC,ACUUUU,AUUUUC,AUUUUU,CAUCUU,CUCCAU,CUUUCU,CUUUUU,UACUUU,UAUUUU,UCCUCU,UCUUCU,UUACUU,UUAUUU,UUCUUC,UUCUUG,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
HNRNPU 5 1136 0.014285714 0.005728537 1.318335 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PUM2 3 764 0.009523810 0.003854293 1.305073 GUACAU,UAAAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PPIE 47 9262 0.114285714 0.046669690 1.292087 AAAUAU,AAAUUU,AAUAUA,AAUUAU,AAUUUA,AAUUUU,AUAAUU,AUAUAU,AUAUUU,AUUAUU,AUUUUA,AUUUUU,UAAAUA,UAAAUU,UAAUUA,UAUAUU,UAUUAU,UAUUUU,UUAAAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ELAVL1 16 3309 0.040476190 0.016676743 1.279236 UAGUUU,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUUGGU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.003007860 1.247764 AGAAAA,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.003017936 1.242939 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
NOVA1 6 1428 0.016666667 0.007199718 1.210953 AUUCAU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
CSTF2 4 1022 0.011904762 0.005154172 1.207726 GUGUUU,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
PABPC1 5 1321 0.014285714 0.006660621 1.100845 ACGAAU,ACUAAU,AGAAAA,CGAAUC,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF5 2 669 0.007142857 0.003375655 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
QKI 3 904 0.009523810 0.004559653 1.062615 ACUAAU,ACUUAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
KHSRP 24 5764 0.059523810 0.029045748 1.035140 AUAUUU,AUGUAU,AUUAUU,AUUUUA,CUGUGU,GUGUAU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUU,UGUAUA,UGUGUA,UUAUUA,UUAUUU,UUUAUA ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
KHDRBS3 6 1646 0.016666667 0.008298065 1.006119 UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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