circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000163635:+:3:63912587:63913225
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000163635:+:3:63912587:63913225 | ENSG00000163635 | ENST00000295900 | + | 3 | 63912588 | 63913225 | 405 | GAGCGGAAAGAAUGUCGGAGCGGGCCGCGGAUGACGUCAGGGGGGAGCCGCGCCGCGCGGCGGCGGCGGCGGGCGGAGCAGCGGCCGCGGCCGCCCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCUCCGCAGCCCCAGCGGCAGCAGCACCCGCCACCGCCGCCACGGCGCACACGGCCGGAGGACGGCGGGCCCGGCGCCGCCUCCACCUCGGCCGCCGCAAUGGCGACGGUCGGGGAGCGCAGGCCUCUGCCCAGUCCUGAAGUGAUGCUGGGACAGUCGUGGAAUCUGUGGGUUGAGGCUUCCAAACUUCCUGGGAAGGACGGGACAGAAUUGGACGAAAGUUUCAAGGAGUUUGGGAAAAACCGCGAAGUCAUGGGGCUCUGUCGGGAAGGAGCGGAAAGAAUGUCGGAGCGGGCCGCGGAUGACGUCAGGGGGGAGCCG | circ |
| ENSG00000163635:+:3:63912587:63913225 | ENSG00000163635 | ENST00000295900 | + | 3 | 63912588 | 63913225 | 22 | CUGUCGGGAAGGAGCGGAAAGA | bsj |
| ENSG00000163635:+:3:63912587:63913225 | ENSG00000163635 | ENST00000295900 | + | 3 | 63912388 | 63912597 | 210 | GCUAGCCCGCGCCGCGGACUUUGAGCCCGGGGCGGGGGGUGGCCUUGAGGAGGCGGGCUCGGGGGGCUGGGCGGCCAUGGGGGCGCUGUCAGCGUGCCCCACCCGGUCCGCGGGCCGCGCACGCCGCCGGAACUCCCUGGCGCCUCCUUAAAAAACGGCCCCCGCGCGACUCUUUCCCCCUUUUUUUUGUUACAUUGUAGGAGCGGAAAG | ie_up |
| ENSG00000163635:+:3:63912587:63913225 | ENSG00000163635 | ENST00000295900 | + | 3 | 63913216 | 63913425 | 210 | UGUCGGGAAGGUGAGUCCAGCCCCCCUGAUGGAGUUUGUACAAACCCCUGGGAAGUUUCAUUGACAGUUCACUGGGACCGGGAACAUCAGCCCACCAUACCGACUCCCCGACUCCCCGUGCCUGCGAAGAUGCUGCCUGAGGAGGGAGGGAGGGGGCAGAGCGCUUGGAAAGUUUGGUUUGGGGGCCUCCUGUAAUGAGAGCGUCCGGAA | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| IFIH1 | 13 | 904 | 0.034567901 | 0.0013115296 | 4.720111 | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCGC,GGGCCG | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| RBM14 | 5 | 478 | 0.014814815 | 0.0006941687 | 4.415610 | CGCGCC,CGCGCG,CGCGGC,GCGCGG | CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG |
| PPRC1 | 7 | 780 | 0.019753086 | 0.0011318283 | 4.125351 | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GGCGCC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| SUPV3L1 | 1 | 199 | 0.004938272 | 0.0002898408 | 4.090674 | CCGCCC | CCGCCC |
| ZC3H10 | 6 | 1053 | 0.017283951 | 0.0015274610 | 3.500226 | CCAGCG,GAGCGC,GCAGCG,GGAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| CNOT4 | 1 | 314 | 0.004938272 | 0.0004564992 | 3.435322 | GACAGA | GACAGA |
| ANKHD1 | 1 | 339 | 0.004938272 | 0.0004927293 | 3.325139 | GACGAA | AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU |
| RBM8A | 2 | 611 | 0.007407407 | 0.0008869128 | 3.062104 | CGCGCC,CGCGCG | ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU |
| FXR1 | 1 | 411 | 0.004938272 | 0.0005970720 | 3.048029 | AUGACG | ACGACA,ACGACG,AUGACA,AUGACG |
| IGF2BP1 | 3 | 831 | 0.009876543 | 0.0012057377 | 3.034090 | AGCACC,CACCCG,GCACCC | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| HNRNPM | 3 | 999 | 0.009876543 | 0.0014492040 | 2.768746 | GAAGGA,GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| ESRP2 | 7 | 2150 | 0.019753086 | 0.0031172377 | 2.663738 | GGGAAA,GGGAAG,GGGGAG,UGGGAA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| HNRNPA3 | 5 | 2140 | 0.014814815 | 0.0031027457 | 2.255423 | AAGGAG,AGGAGC,CAAGGA,GGAGCC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| FXR2 | 8 | 3434 | 0.022222222 | 0.0049780156 | 2.158360 | GACAGA,GACGAA,GACGGG,GGACAG,GGACGA,GGACGG | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| EIF4B | 2 | 1179 | 0.007407407 | 0.0017100607 | 2.114921 | GUCGGA,UUGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| PABPC3 | 2 | 1234 | 0.007407407 | 0.0017897669 | 2.049197 | AAAAAC,AAAACC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| SAMD4A | 7 | 3992 | 0.019753086 | 0.0057866714 | 1.771272 | CGGGAA,CGGGAC,CGGGCC,GCGGGC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| G3BP1 | 27 | 14282 | 0.069135802 | 0.0206989801 | 1.739873 | ACCCGC,CACACG,CACCCG,CAGGCC,CCACCG,CCCCAG,CCCGCC,CCCGGC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCUCCG,CCUCGG,CGGCAG,CGGCCG,CUCCGC,CUCGGC,UCCGCA,UCGGCC | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
| HNRNPH3 | 12 | 7688 | 0.032098765 | 0.0111429292 | 1.526389 | CGGGCG,GAAUGU,GGAAGG,GGAGGA,GGGAAG,GGGGAG,GGGGCU,GGGGGG,UGUGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| SNRNP70 | 1 | 1237 | 0.004938272 | 0.0017941145 | 1.460734 | UUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| SRSF1 | 158 | 99563 | 0.392592593 | 0.1442885423 | 1.444076 | AAAGAA,AAGGAC,AAGGAG,ACAGAA,AGCGGA,AGCGGG,AGGACG,AGGAGC,CAAGGA,CAAUGG,CACACG,CACCCG,CAGCCG,CAGCGG,CAGUCG,CCACCG,CCACGG,CCAGCG,CCCAGC,CCCGCC,CCCGGC,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGGAG,CCGGCA,CCGGCG,CCUCCA,CCUCCG,CCUCGG,CCUGGG,CGACGG,CGCACA,CGCAGC,CGCAGG,CGCCCG,CGCCGC,CGCGCC,CGCGCG,CGCGGA,CGCGGC,CGGAGC,CGGAGG,CGGCAG,CGGCCG,CGGCGC,CGGCGG,CGGGCC,CGGGCG,CGGGGA,CGGUCG,CGUGGA,GAAAGA,GAAGGA,GACAGA,GACGAA,GACGGC,GACGGG,GAGCAG,GAGCGG,GAGGAC,GAUGAC,GAUGCU,GCAGCA,GCAGCG,GCAGGC,GCCCCA,GCCCGG,GCCGCA,GCCGCG,GCCGGA,GCGCCG,GCGCGG,GCGGAA,GCGGAG,GCGGCA,GCGGCG,GCUGGG,GGAAAG,GGAAGG,GGACAG,GGACGA,GGACGG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAUGA,GGCCCG,GGCCGG,GGCGCA,GGCGGA,GGCGGG,GGGCCG,GGGCGG,GGGGAG,GGGGGA,GGGGGG,GGUCGG,UGAUGC,UUCAAG,UUUCAA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGA,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
| HNRNPH2 | 13 | 9711 | 0.034567901 | 0.0140746688 | 1.296332 | CGGGCG,GAAUGU,GGAAGG,GGAGGA,GGGAAG,GGGGAG,GGGGCU,GGGGGA,GGGGGG,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPF | 14 | 10561 | 0.037037037 | 0.0153064921 | 1.274825 | AUGGGG,GAAUGU,GGAAGG,GGAGGA,GGGAAG,GGGGAG,GGGGCU,GGGGGG,UGGGAA,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| RBM4 | 3 | 3065 | 0.009876543 | 0.0044432593 | 1.152388 | CGCGCG,CUUCCU,GCGCGG | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| FMR1 | 25 | 20291 | 0.064197531 | 0.0294072466 | 1.126346 | AAGGAG,AGCAGC,AGCGGC,AGGAGU,GAAGGA,GAGCGG,GCGAAG,GCUGGG,GGACAG,GGGGGG | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| G3BP2 | 1 | 1644 | 0.004938272 | 0.0023839405 | 1.050658 | GGAUGA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| HNRNPH1 | 12 | 10717 | 0.032098765 | 0.0155325680 | 1.047221 | CGGGCG,GAAUGU,GGAAGG,GGAGGA,GGGAAG,GGGGAG,GGGGCU,GGGGGG,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPA3 | 2 | 5 | 0.13636364 | 0.0003929788 | 8.438792 | AAGGAG,AGGAGC | AGGAGC,CAAGGA,CCAAGG,GCCAAG |
| HNRNPM | 1 | 5 | 0.09090909 | 0.0003929788 | 7.853829 | GAAGGA | AAGGAA,GAAGGA |
| ZC3H10 | 1 | 10 | 0.09090909 | 0.0007204611 | 6.979360 | GGAGCG | CAGCGA,CAGCGC,CCAGCG,GCAGCG,GGAGCG |
| RBMX | 2 | 34 | 0.13636364 | 0.0022923762 | 5.894471 | GAAGGA,GGAAGG | AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA |
| HNRNPA2B1 | 3 | 49 | 0.18181818 | 0.0032748232 | 5.794936 | AAGGAG,AGGAGC,GAAGGA | AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG |
| TRA2B | 2 | 51 | 0.13636364 | 0.0034058161 | 5.323315 | GAAGGA,GGAAGG | AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA |
| RBM5 | 2 | 56 | 0.13636364 | 0.0037332984 | 5.190864 | AAGGAG,GAAGGA | AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU |
| SRSF9 | 4 | 134 | 0.22727273 | 0.0088420225 | 4.683904 | AGGAGC,GAAGGA,GGAAGG,GGAGCG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| HNRNPA1 | 3 | 119 | 0.18181818 | 0.0078595756 | 4.531901 | AAGGAG,AGGAGC,GGAAGG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| HNRNPH3 | 1 | 61 | 0.09090909 | 0.0040607807 | 4.484596 | GGAAGG | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| FMR1 | 2 | 117 | 0.13636364 | 0.0077285827 | 4.141111 | AAGGAG,GAAGGA | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.0053052135 | 4.098942 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPF | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | GGAAGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| SRSF7 | 1 | 128 | 0.09090909 | 0.0084490438 | 3.427565 | GGAAGG | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SFPQ | 1 | 153 | 0.09090909 | 0.0100864553 | 3.172005 | GAAGGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| SRSF10 | 1 | 160 | 0.09090909 | 0.0105449306 | 3.107875 | AAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF2 | 4 | 479 | 0.22727273 | 0.0314383023 | 2.853829 | AAGGAG,AGGAGC,GGAAGG,GGAGCG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 5 | 625 | 0.27272727 | 0.0410007860 | 2.733736 | AAGGAG,AGGAGC,GAAGGA,GGAAGG,GGAGCG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM14 | 3 | 53 | 0.009523810 | 0.0002720677 | 5.129501 | CGCGCC,CGCGCG,CGCGGG | CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG |
| PPRC1 | 7 | 127 | 0.019047619 | 0.0006449012 | 4.884389 | CCGCGC,CGCGCC,CGCGCG,GGCGCC,GGGCGC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| IFIH1 | 7 | 146 | 0.019047619 | 0.0007406288 | 4.684716 | CCGCGG,CGCGGA,GCCGCG,GGCCGC,GGGCCG | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| RBM8A | 2 | 84 | 0.007142857 | 0.0004282547 | 4.059960 | CGCGCC,CGCGCG | ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU |
| ZC3H10 | 2 | 140 | 0.007142857 | 0.0007103990 | 3.329800 | GAGCGC,GGAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| HNRNPM | 2 | 222 | 0.007142857 | 0.0011235389 | 2.668451 | GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| EIF4B | 2 | 226 | 0.007142857 | 0.0011436921 | 2.642803 | CUUGGA,UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| IGF2BP1 | 1 | 173 | 0.004761905 | 0.0008766626 | 2.441445 | CACCCG | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| YBX2 | 2 | 263 | 0.007142857 | 0.0013301088 | 2.424957 | AACAUC,ACAUCA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| SRP14 | 1 | 218 | 0.004761905 | 0.0011033857 | 2.109602 | CCUGUA | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| HNRNPH3 | 20 | 2496 | 0.050000000 | 0.0125806127 | 1.990726 | AAGGUG,CGGGGG,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| SAMD4A | 5 | 790 | 0.014285714 | 0.0039852882 | 1.841817 | CGGGAA,CGGGCC,GCGGGC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| HNRNPH2 | 22 | 3198 | 0.054761905 | 0.0161174929 | 1.764545 | AAGGUG,CGGGGG,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPF | 23 | 3360 | 0.057142857 | 0.0169336961 | 1.754676 | AAGGUG,AUGGGG,CGGGGG,GAAGGU,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UGGGAA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 23 | 3406 | 0.057142857 | 0.0171654575 | 1.735065 | AAGGUG,CGGGGG,GAAGGU,GAGGGG,GGAAGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPU | 7 | 1136 | 0.019047619 | 0.0057285369 | 1.733372 | AAAAAA,CCCCCC,GGGGGG,UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| PABPC3 | 1 | 310 | 0.004761905 | 0.0015669085 | 1.603618 | AAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| RBM41 | 2 | 502 | 0.007142857 | 0.0025342604 | 1.494937 | UACAUU,UUACAU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | UGUAGG | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| HNRNPK | 18 | 3244 | 0.045238095 | 0.0163492543 | 1.468313 | AAAAAA,CAAACC,CAUACC,CCAUAC,CCCCAC,CCCCCC,CCCCCU,CCCCUU,GCCCAC,GCCCCC,GGGGGG,UCCCCC,UUUUUU | AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU |
| CPEB4 | 3 | 691 | 0.009523810 | 0.0034864974 | 1.449760 | UUUUUU | UUUUUU |
| DDX19B | 3 | 691 | 0.009523810 | 0.0034864974 | 1.449760 | UUUUUU | UUUUUU |
| EIF4A3 | 3 | 691 | 0.009523810 | 0.0034864974 | 1.449760 | UUUUUU | UUUUUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | AGGAGC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| IGHMBP2 | 1 | 350 | 0.004761905 | 0.0017684401 | 1.429061 | AAAAAA | AAAAAA |
| NOVA1 | 7 | 1428 | 0.019047619 | 0.0071997179 | 1.403598 | CCCCCC,GGGGGG,UUCAUU,UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| LIN28A | 4 | 900 | 0.011904762 | 0.0045395002 | 1.390933 | GGAGGG,UGGAGU | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| ESRP2 | 3 | 731 | 0.009523810 | 0.0036880290 | 1.368689 | GGGAAG,UGGGAA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| SRSF1 | 111 | 20925 | 0.266666667 | 0.1054312777 | 1.338735 | AAGGUG,ACCCGG,AGCGGA,AGGAGC,AGGAGG,AUGGAG,CACCCG,CACUGG,CAGAGC,CCACCA,CCACCC,CCAGCC,CCAUGG,CCCACC,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCGAC,CCCGCG,CCCGGG,CCCUGA,CCCUGG,CCGACU,CCGCCG,CCGCGC,CCGCGG,CCGGGA,CCGGGG,CCGUGC,CCUGCG,CCUGGG,CGCACG,CGCCGC,CGCCGG,CGCGCA,CGCGCC,CGCGCG,CGCGGA,CGCGGG,CGGAAC,CGGCCA,CGGCCC,CGGGCC,CGGGGC,CGGGGG,CGGUCC,CGUCCG,GAAGAU,GAAGGU,GAGCGG,GAGGAG,GAGGGA,GAGGGG,GAUGCU,GAUGGA,GCCCAC,GCCCCA,GCCCGG,GCCGCG,GCCGGA,GCGCCG,GCGCGA,GCGGAA,GCGGAC,GCGGGG,GCUCGG,GCUGGG,GGAAAG,GGAACA,GGAAGG,GGACCG,GGAGCG,GGAGGC,GGAGGG,GGCAGA,GGCGGG,GGGCCG,GGGCGG,GGGGCA,GGGGCG,GGGGGG,GGUCCG,GGUGGC,GUAGGA,UCCGGA,UGACAG,UGAUGG,UGGAAA,UGUAGG,UUGACA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
| YBX1 | 6 | 1321 | 0.016666667 | 0.0066606207 | 1.323237 | AACAUC,ACAUCA,CCACCA,CCUGCG,GCCUGC,UCCAGC | AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU |
| SYNCRIP | 4 | 1041 | 0.011904762 | 0.0052498992 | 1.181177 | AAAAAA,UUUUUU | AAAAAA,UUUUUU |
| FUS | 7 | 1711 | 0.019047619 | 0.0086255542 | 1.142922 | AAAAAA,GGGGGG,GGGUGG,UUUUUU | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| RBM5 | 10 | 2359 | 0.026190476 | 0.0118903668 | 1.139249 | AAAAAA,AAGGUG,AGGGAG,CCCCCC,GAAGGU,GAGGGA,GGGGGG | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| FMR1 | 24 | 5430 | 0.059523810 | 0.0273629585 | 1.121243 | AAAAAA,ACUGGG,AGGAGG,AGGGAG,AUGGAG,CUGAGG,CUGGGC,GAGCGG,GCGAAG,GCGACU,GCUGGG,GGCUGG,GGGCUG,GGGGGG,UGACAG,UGAGGA,UGGAGU,UUUUUU | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| RBM4 | 4 | 1094 | 0.011904762 | 0.0055169287 | 1.109602 | CGCGCG,CGCGGG,CUCUUU,GCGCGA | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| RALY | 4 | 1117 | 0.011904762 | 0.0056328094 | 1.079612 | UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| G3BP1 | 14 | 3431 | 0.035714286 | 0.0172914148 | 1.046445 | ACCCCU,ACGCCG,CACCCG,CACGCC,CCACCC,CCAUAC,CCCACC,CCCCAC,CCCCCC,CCCCCG,CCCCGC,CCGCCG,CGGCCC | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
| HNRNPCL1 | 5 | 1381 | 0.014285714 | 0.0069629182 | 1.036809 | CUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| PABPC4 | 1 | 462 | 0.004761905 | 0.0023327287 | 1.029520 | AAAAAA | AAAAAA,AAAAAG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.