ENSG00000243156:-:22:17864898:17906886

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000243156:-:22:17864898:17906886 ENSG00000243156 ENST00000672019 - 22 17864899 17906886 2679 AUUAACGUGACAGUGUCAGGUGGACCCACAGCCAUCCCACCUCCCCCUCUGGGGAGUGCUGAGAGUGAGGCAGCAUGGAGGAGAGGAAGCAUGAGACCAUGAACCCAGCUCAUGUCCUCUUUGACCGGUUUGUCCAGGCCACCACCUGCAAGGGAACCCUCAAGGCUUUCCAGGAGCUCUGUGACCACCUGGAACUAAAGCCAAAGGACUACCGCUCCUUCUAUCACAAGCUCAAGUCCAAGCUUAACUACUGGAAAGCCAAAGCCCUCUGGGCAAAAUUGGACAAACGGGGCAGUCACAAAGACUACAAAAAGGGAAAAGCGUGCACUAACACCAAGUGUCUCAUCAUUGGGGCUGGCCCCUGUGGUCUCCGUACAGCCAUCGACUUAUCCUUACUGGGGGCCAAGGUGGUUGUUAUUGAGAAACGAGAUGCCUUCUCCCGCAACAACGUCUUGCAUCUCUGGCCAUUCACCAUACAUGAUCUACGAGGUCUGGGUGCCAAGAAGUUCUAUGGCAAGUUCUGUGCUGGAGCCAUCGACCAUAUCAGUAUCCGUCAGCUCCAACUAAUACUUUUGAAAGUAGCCUUGAUCCUAGGCAUUGAAAUCCACGUCAAUGUGGAAUUCCAAGGACUUAUACAGCCUCCUGAGGACCAAGAGAAUGAACGGAUAGGCUGGCGGGCACUGGUGCACCCCAAGACUCAUCCUGUGUCAGAGUAUGAAUUUGAAGUGAUCAUCGGUGGGGAUGGUCGGAGGAACACCUUGGAAGGGUUUCGUCGGAAAGAAUUCCGUGGCAAACUGGCCAUCGCCAUCACGGCAAAUUUUAUCAACCGAAAUACAACAGCAGAAGCUAAAGUGGAAGAGAUCAGUGGUGUGGCUUUUAUAUUCAACCAAAAAUUUUUCCAGGAACUGAGGGAAGCCACAGGUAUUGACUUGGAGAACAUCGUUUACUACAAAGAUGACACACACUAUUUCGUUAUGACAGCCAAAAAGCAGAGUUUGCUGGACAAAGGAGUGAUACUACAUGACUACGCCGACACAGAGCUCCUGCUUUCCCGAGAAAACGUGGACCAGGAGGCUCUGCUCAGCUAUGCCAGGGAGGCGGCAGACUUCUCUACCCAGCAGCAGCUGCCGUCUCUGGAUUUUGCCAUCAAUCACUAUGGGCAGCCCGAUGUGGCCAUGUUUGACUUCACUUGUAUGUAUGCCUCCGAGAACGCCGCCUUGGUGCGGGAGCAGAACGGACACCAGUUACUAGUGGCUCUGGUCGGGGACAGCCUCCUAGAGCCUUUCUGGCCAAUGGGAACAGGAAUAGCCCGGGGCUUUCUAGCUGCUAUGGACUCUGCCUGGAUGGUCCGAAGUUGGUCUCUAGGAACGAGCCCUUUGGAAGUGCUGGCAGAGAGGGAAAGUAUUUACAGGUUGCUGCCUCAGACCACCCCUGAGAAUGUGAGUAAGAACUUCAGCCAGUACAGUAUCGACCCUGUCACUCGGUAUCCCAAUAUCAACGUCAACUUCCUCCGGCCAAGCCAGGUGCGCCAUUUAUAUGAUACUGGCGAAACAAAAGAUAUUCACCUGGAAAUGGAGAGCCUGGUGAAUUCCCGAACCACCCCCAAAUUGACUCGCAAUGAGUCUGUAGCUCGUUCAAGCAAACUGCUGGGUUGGUGCCAGAGGCAGACAGAUGGCUAUGCAGGGGUAAACGUGACAGAUCUCACCAUGUCCUGGAAAAGUGGCUUGGCCCUUUGUGCAAUUAUCCAUAGAUACCGCCCUGACCUGAUAGAUUUUGAUUCUUUGGAUGAGCAAAAUGUGGAGAAGAAUAACCAACUGGCCUUUGACAUUGCUGAGAAGGAAUUGGGCAUUUCUCCCAUCAUGACAGGCAAAGAAAUGGCCUCCGUGGGGGAGCCUGAUAAGCUGUCCAUGGUGAUGUACCUGACUCAGUUCUACGAGAUGUUUAAGGACUCCCUCCCCUCUAGCGACACCUUGGACCUAAAUGCCGAGGAGAAAGCAGUCCUGAUAGCCAGCACCAGAUCCCCUAUCUCCUUCCUAAGCAAACUUGGCCAGACCAUCUCUCGGAAGCGUUCUCCCAAGGAUAAAAAGGAAAAGGACUUGGAUGGUGCUGGGAAGAGGAGAAAGACCAGUCAAUCAGAGGAGGAGGAAGCUCCUCGGGGCCACAGAGGAGAAAGACCGACCCUGGUGAGCACUCUGACAGACAGGAGGAUGGACGUUGCCGUUGGGAACCAGAACAAAGUGAAGUACAUGGCGACCCAGCUGCUGGCCAAAUUUGAAGAGAAUGCGCCCGCACAGUCCAUCGGCAUACGGAGACAGGGCUCCAUGAAGAAGGAGUUCCCGCAGAACCUGGGAGGCAGCGACACAUGCUACUUCUGCCAGAAGCGGGUCUACGUGAUGGAGAGGCUGAGUGCCGAGGGCAAGUUCUUCCACCGGAGCUGCUUCAAGUGCGAGUACUGCGCCACCACCCUGCGCCUCUCGGCCUACGCCUACGACAUCGAGGAUGGUAAAUUCUACUGUAAGCCACACUACUGCUAUCGACUCUCUGGCUACGCACAAAGGAAGAGACCGGCAGUGGCUCCCCUGUCUGGAAAGGAGGCCAAAGGACCCCUGCAGGAUGGCGCCACCACAGAUGCAAACGGACGGGCCAACGCCGUGGCCAGCUCCACUGAGAGAACCCCAGAUUAACGUGACAGUGUCAGGUGGACCCACAGCCAUCCCACCUCCCCCUCU circ
ENSG00000243156:-:22:17864898:17906886 ENSG00000243156 ENST00000672019 - 22 17864899 17906886 22 GAGAACCCCAGAUUAACGUGAC bsj
ENSG00000243156:-:22:17864898:17906886 ENSG00000243156 ENST00000672019 - 22 17906877 17907086 210 GAUCCUUGAGAGCAAGAACCAUCCUGCUCACCUUUCCAGCCCCAGUGUUUCGUAGUGCCUGGAGUAUUGCAGGUGUGCAGUCCACACUUAUGGAUGGAUGACUGCGACACUUUAGAACUCUGCUUUGAAGAGGAAUAUGUCUCCUGGAGAAUGUUUGUAGACAGAGAAAUGCUAACCACGUUUUUCUUUCUUUUUGUCAGAUUAACGUGA ie_up
ENSG00000243156:-:22:17864898:17906886 ENSG00000243156 ENST00000672019 - 22 17864699 17864908 210 AGAACCCCAGGUAGCCUCACUUCCUUGUUUGGCUGGGUGGCGCGUCACUCCCUCGGCCUCUGUGACAAGGCCAAGGGCAUGAGCCAGCACCUCCAAAGCAACAUUUCUUCAUUCGGGCAACAAGUGGCCCAAAACCCUCUGGACUCCUUUUUCAUGUGCCAGCUGCUUGCGUUCGGAGUCCCCUUUCUCUAUGGCCUGUCGGAGGUGCUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 3 314 0.0014930944 0.0004564992 1.709621 GACAGA GACAGA
RBM42 4 407 0.0018663680 0.0005912752 1.658332 AACUAA,AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 4 411 0.0018663680 0.0005970720 1.644257 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
EIF4B 13 1179 0.0052258305 0.0017100607 1.611613 CUCGGA,CUUGGA,GUCGGA,UCGGAA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM8A 6 611 0.0026129153 0.0008869128 1.558796 AUGCGC,GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SUPV3L1 1 199 0.0007465472 0.0002898408 1.364973 CCGCCC CCGCCC
NONO 13 1498 0.0052258305 0.0021723567 1.266399 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TUT1 5 678 0.0022396417 0.0009840095 1.186524 AAAUAC,AAUACU,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
G3BP2 13 1644 0.0052258305 0.0023839405 1.132312 AGGAUA,AGGAUG,GGAUAA,GGAUAG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPAB 13 1782 0.0052258305 0.0025839306 1.016093 AAAGAC,ACAAAG,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GAUUAA AAUUAA,AUUUAA,GACUUA,GGCUUA
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 AGAUUA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF2 1 479 0.09090909 0.0314383023 1.531901 CCAGAU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 2 53 0.007142857 0.0002720677 4.714464 CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
SNRPB2 5 288 0.014285714 0.0014560661 3.294425 AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGA,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 GUCGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NONO 2 364 0.007142857 0.0018389762 1.957598 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
LIN28A 6 900 0.016666667 0.0045395002 1.876360 CGGAGG,CGGAGU,GGAGAA,GGAGUA,UGGAGA,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
FXR2 4 730 0.011904762 0.0036829907 1.692589 AGACAG,GACAAG,GACAGA,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUUAU,AUUAAC,CACACU,CUAACC AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAGG,AGAGGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home