ENSG00000156374:-:10:103314185:103326632

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000156374:-:10:103314185:103326632 ENSG00000156374 ENST00000369847 - 10 103314186 103326632 186 CCAUUGGAAAAGAAGUUUGUUCGAGUUUCAGGAGAAGCAACUAUUGGACAUGUAGAAAAAUUCCUCAGAAGAAAAAUGGGUCUUGAUCCAGCUUGUCAGGUAGAUAUAAUCUGUGGUGAUCACCUGUUGGAGCAGUAUCAAACUCUAAGGGAAAUCCGACGUGCAAUAGGUGAUGCAGCAAUGCAGCCAUUGGAAAAGAAGUUUGUUCGAGUUUCAGGAGAAGCAACUAUUGGACA circ
ENSG00000156374:-:10:103314185:103326632 ENSG00000156374 ENST00000369847 - 10 103314186 103326632 22 CAGCAAUGCAGCCAUUGGAAAA bsj
ENSG00000156374:-:10:103314185:103326632 ENSG00000156374 ENST00000369847 - 10 103326623 103326832 210 GGAAAGCUAAGCAGAAUUUCCAUUUUUCUUCUCUGAUAUGUGUAUUAACUUGUUUCAUAGUAAGUUUUUUCAAGAGUCUAUUGAAUCAUCUUCGCUAUAAAAUUUUCUUUAAUGUUUACACAUUACAUAUAUAUACACAUACGUCAUGCAUGUACAGGUAUAUUUAACCUAAAAAUAGUUUUAUCUGUCUGUUUUUGUAGCCAUUGGAAA ie_up
ENSG00000156374:-:10:103314185:103326632 ENSG00000156374 ENST00000369847 - 10 103313986 103314195 210 AGCAAUGCAGGUAGGUUAUAGACAUACCCAUGUCUAACAGAUAAGUUACUUAGUGAAAGUUAUCCAUGUUAUCAGUAAGUUUUCAUAAAUAUUCUACAAUACUCUUAAAAUUACCUACACUAUAAAUAAUAAUUAUAUUUAAUAUUUAUCAAAUUCUUGCUGUGUGUCAGGUACUGUUCUAAGUAAUUUAUGUAGAUUAGCUUAUUUAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 1 453 0.01075269 0.0006579386 4.030601 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 1 497 0.01075269 0.0007217036 3.897147 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AGO1 1 548 0.01075269 0.0007956130 3.756487 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
EIF4B 3 1179 0.02150538 0.0017100607 3.652578 GUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 632 0.01075269 0.0009173461 3.551087 UUUCAG UUCAGA,UUUCAG
SRSF11 1 688 0.01075269 0.0009985015 3.428789 AAGAAG AAGAAG
PABPN1 2 1222 0.01612903 0.0017723764 3.185903 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM28 1 822 0.01075269 0.0011926949 3.172400 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PUM2 3 1890 0.02150538 0.0027404447 2.972215 GUAGAU,UAGAUA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SART3 4 2634 0.02688172 0.0038186524 2.815490 AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM6 1 1054 0.01075269 0.0015289102 2.814122 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
A1CF 2 1642 0.01612903 0.0023810421 2.759995 CAGUAU,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZNF638 2 1773 0.01612903 0.0025708878 2.649321 UGUUCG,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF6 3 2997 0.02150538 0.0043447134 2.307364 GUGAUG,GUGGUG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZRANB2 3 3173 0.02150538 0.0045997733 2.225063 AGGGAA,AGGUAG,GUGGUG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
PABPC5 2 2400 0.01612903 0.0034795387 2.212692 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC1 4 4443 0.02688172 0.0064402624 2.061434 AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RC3H1 1 1786 0.01075269 0.0025897275 2.053825 UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
MSI1 2 2770 0.01612903 0.0040157442 2.005921 AGGUAG,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF4 3 3740 0.02150538 0.0054214720 1.987941 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SNRPA 6 7380 0.03763441 0.0106965744 1.814903 AGCAGU,AGGAGA,AUUCCU,GAGCAG,GCAGUA ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
ESRP2 1 2150 0.01075269 0.0031172377 1.786357 GGGAAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
LIN28A 3 4315 0.02150538 0.0062547643 1.781670 AGGAGA,GGAGAA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
TRA2A 5 6871 0.03225806 0.0099589296 1.695597 AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CELF1 1 2391 0.01075269 0.0034664959 1.633147 GUUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
TARDBP 1 2654 0.01075269 0.0038476365 1.482653 UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
NOVA2 2 4013 0.01612903 0.0058171047 1.471287 AUCACC,GAUCAC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPD 1 2837 0.01075269 0.0041128408 1.386490 AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PUM1 3 5823 0.02150538 0.0084401638 1.349354 GUAGAU,UAGAUA,UGUAGA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TRA2B 4 7329 0.02688172 0.0106226650 1.339480 AAAGAA,AAGAAG,AGAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF5 5 8869 0.03225806 0.0128544391 1.327393 AAGAAG,AGAAGA,GAAGAA,UGCAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
DAZAP1 3 5964 0.02150538 0.0086445016 1.314843 AGAUAU,AGGUAG,AGUUUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ENOX1 1 3195 0.01075269 0.0046316558 1.215097 UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
IGF2BP3 2 4815 0.01612903 0.0069793662 1.208492 AAACUC,AAAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBMX 2 4925 0.01612903 0.0071387787 1.175911 AAGAAG,AUCAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
FUS 1 3648 0.01075269 0.0052881452 1.023864 UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF5 1 44 0.09090909 0.002947341 4.946939 UGCAGC AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 4 221 0.011904762 0.0011185006 3.411901 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
PUM2 9 764 0.023809524 0.0038542926 2.627001 GUAGAU,GUAUAU,UAAAUA,UACAUA,UAUAUA,UGUACA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ZFP36L2 9 774 0.023809524 0.0039046755 2.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AUAUAU,CAUAUA,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM6 1 191 0.004761905 0.0009673519 2.299426 UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PUM1 21 2172 0.052380952 0.0109482064 2.258348 AAUAUU,AAUGUU,AGAAUU,AGAUAA,CAGAAU,GUAGAU,GUAUAU,UAAAUA,UAAUAU,UAAUGU,UACAUA,UAUAUA,UGUACA,UGUAGA,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,AUCAGU,UAAUUA,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CELF2 5 881 0.014285714 0.0044437727 1.684716 AUGUGU,GUCUGU,GUGUGU,UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PPIE 61 9262 0.147619048 0.0466696896 1.661321 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUU,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAU,AUAUUU,AUUAUA,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UUAAAA,UUAAUA,UUAUAU,UUAUUU,UUUAAU,UUUAUU,UUUUAU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
QKI 5 904 0.014285714 0.0045596534 1.647577 AAUCAU,ACACUA,AUUAAC,CUAACA,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ENOX1 4 756 0.011904762 0.0038139863 1.642167 GUACAG,UAGACA,UAUACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBM41 2 502 0.007142857 0.0025342604 1.494937 UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGUAG,AGUAAG,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ELAVL2 50 9826 0.121428571 0.0495112858 1.294279 AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUAU,AUUUUC,AUUUUU,CAUUUU,CUUUAA,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UAUAUA,UAUAUU,UAUUGA,UAUUUA,UGUAUU,UUACUU,UUAUAU,UUAUGU,UUAUUU,UUCUUU,UUUAAU,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUUAU,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SF1 5 1294 0.014285714 0.0065245869 1.130615 AGUAAG,AUUAAC,CUAACA,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
CELF1 4 1097 0.011904762 0.0055320435 1.105654 CUGUCU,GUGUGU,UGUCUG,UGUGUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UAGUUU,UAUUUA,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AAUUUA,ACAUUA,AUUAGC,CUAACA,CUAAGC,CUAAGU,CUUUAA,GAUUAG,GUAGCC,UAACAG,UAAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AAAUAA,AGAUAA,AUAAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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