ENSG00000070961:-:12:89630504:89642355

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000070961:-:12:89630504:89642355 ENSG00000070961 MSTRG.7745.3 - 12 89630505 89642355 720 GUUUAAGUGGAAACCCUGCAGAUUUAGAAAGAAGAGAAGCAGUGUUUGGAAAGAAUUUUAUACCUCCUAAAAAGCCAAAAACCUUUCUUCAAUUAGUAUGGGAAGCAUUACAAGAUGUCACUUUAAUUAUAUUAGAAAUUGCAGCCAUAGUAUCAUUGGGCCUUUCUUUUUAUCAGCCUCCAGAAGGGGAUAAUGCACUUUGUGGAGAAGUUUCUGUUGGGGAGGAAGAAGGUGAAGGUGAAACUGGUUGGAUUGAAGGAGCUGCAAUCCUCUUGUCUGUAGUGUGUGUGGUGUUAGUAACAGCUUUCAAUGACUGGAGUAAGGAAAAACAGUUUAGAGGUUUGCAGAGCCGAAUUGAACAAGAACAGAAGUUCACUGUCAUCAGGGGUGGUCAGGUCAUUCAGAUACCUGUAGCUGACAUUACUGUUGGAGAUAUUGCUCAAGUGAAAUAUGGUGAUCUUCUUCCAGCUGACGGCAUACUUAUUCAAGGCAACGAUCUUAAAAUUGAUGAAAGCUCAUUGACUGGUGAAUCAGAUCAUGUUAAAAAGUCUUUAGAUAAGGAUCCCUUACUUCUAUCAGGUACUCAUGUAAUGGAAGGCUCUGGAAGAAUGGUAGUUACAGCUGUAGGUGUAAAUUCUCAAACUGGAAUUAUCUUUACCUUACUUGGAGCUGGAGGUGAAGAGGAAGAGAAGAAAGAUGAGAAGAAAAAGGAAAAGAAAAGUUUAAGUGGAAACCCUGCAGAUUUAGAAAGAAGAGAAGCAGUGUUUGGA circ
ENSG00000070961:-:12:89630504:89642355 ENSG00000070961 MSTRG.7745.3 - 12 89630505 89642355 22 GGAAAAGAAAAGUUUAAGUGGA bsj
ENSG00000070961:-:12:89630504:89642355 ENSG00000070961 MSTRG.7745.3 - 12 89642346 89642555 210 CAGUCCUAACUGAUCUACUUAAAGUGUUCUUUUAAAGACCUGCACAUGUUUUUCAGUGAUUUAAAUUCUGUACACUUAAAGCAUGAAAGUAAACAUUUUGGUAGGGUCUAGAGUGAUGAGUUGAGGUAUUUUGAAUAAAACUAUAUAUUUUCAUUUGUAAGAAGUAAAACUGUUCACUGAAAUUUGUUUCUUUUUAUUAGGUUUAAGUGG ie_up
ENSG00000070961:-:12:89630504:89642355 ENSG00000070961 MSTRG.7745.3 - 12 89630305 89630514 210 GAAAAGAAAAGUAAGAAUAACAAUUUUCUAUAAUUGGUAUUUGGAAAUAGGGCAAAUAAUUUGUAAGAACUAGUACCUUCUUUCAAGAGAUUCUGGUAUGAAAAAUUCUACAAAAAGUUAAAAGAAGAUUUUUCUAUUAGACUUAAUAGCAUGGGCCUUUAGAGAAUACAUCAGUCCCCUUUACCAUGGCCAGAGAAAUUCAGCAUCUAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 2 452 0.004166667 0.0006564894 2.666050 UGACUG UGACUG,UGCAUG
RBMY1A1 2 489 0.004166667 0.0007101099 2.552779 ACAAGA ACAAGA,CAAGAC
SRP14 4 847 0.006944444 0.0012289250 2.498462 CCUGUA,CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
SNRPB2 4 991 0.006944444 0.0014376103 2.272187 AUUGCA,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF5 6 1415 0.009722222 0.0020520728 2.244204 GUGUGG,GUGUGU,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPN1 5 1222 0.008333333 0.0017723764 2.233209 AAAAGA,AGAAGA AAAAGA,AGAAGA
SRSF4 17 3740 0.025000000 0.0054214720 2.205172 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 30 6871 0.043055556 0.0099589296 2.112137 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CELF4 7 1782 0.011111111 0.0025839306 2.104364 GGUGUU,GUGUGG,GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPA0 1 453 0.002777778 0.0006579386 2.077906 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.004166667 0.0009985015 2.061057 AAGAAG AAGAAG
EIF4B 4 1179 0.006944444 0.0017100607 2.021812 CUUGGA,GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TRA2B 30 7329 0.043055556 0.0106226650 2.019054 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPC3 4 1234 0.006944444 0.0017897669 1.956088 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPM 3 999 0.005555556 0.0014492040 1.938671 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM41 4 1318 0.006944444 0.0019115000 1.861154 AUACUU,UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 2 822 0.004166667 0.0011926949 1.804669 UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
AGO1 1 548 0.002777778 0.0007956130 1.803792 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CSTF2 6 1967 0.009722222 0.0028520334 1.769295 GUGUGU,GUGUUU,UGUGUG,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
PABPC4 3 1251 0.005555556 0.0018144033 1.614436 AAAAAG AAAAAA,AAAAAG
CELF2 5 1886 0.008333333 0.0027346479 1.607539 GUCUGU,GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ERI1 1 632 0.002777778 0.0009173461 1.598393 UUCAGA UUCAGA,UUUCAG
RBM24 6 2357 0.009722222 0.0034172229 1.508462 AGUGUG,GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
TUT1 1 678 0.002777778 0.0009840095 1.497187 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
CELF1 6 2391 0.009722222 0.0034664959 1.487808 GUGUGU,UGUCUG,UGUGUG,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 6 2400 0.009722222 0.0034795387 1.482390 AGAAAA,AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMX 13 4925 0.019444444 0.0071387787 1.445609 AAGAAG,AAGGAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,GAAGGA,GGAAGG,GUAACA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ESRP2 5 2150 0.008333333 0.0031172377 1.418626 GGGAAG,GGGGAG,GGGGAU,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBFOX1 2 1077 0.004166667 0.0015622419 1.415276 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
MATR3 1 739 0.002777778 0.0010724109 1.373073 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
NONO 3 1498 0.005555556 0.0021723567 1.354670 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SART3 6 2634 0.009722222 0.0038186524 1.348223 AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TARDBP 6 2654 0.009722222 0.0038476365 1.337314 GAAUGG,GUGAAU,GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SRSF5 22 8869 0.031944444 0.0128544391 1.313298 AACAGC,AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA,UACAGC,UGCAGA,UGCAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
MSI1 6 2770 0.009722222 0.0040157442 1.275619 AGGAAG,AGUAAG,UAGGUG,UAGUAA,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZCRB1 3 1605 0.005555556 0.0023274215 1.255199 GAAUUA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SNRNP70 2 1237 0.004166667 0.0017941145 1.215622 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
DAZAP1 13 5964 0.019444444 0.0086445016 1.169503 AGAUAU,AGGAAA,AGGAAG,AGUAAG,AGUAUG,AGUUUA,UAGUAA,UAGUAU,UAGUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ZNF638 3 1773 0.005555556 0.0025708878 1.111665 GGUUGG,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SRSF10 29 13860 0.041666667 0.0200874160 1.052602 AAAAGA,AAAGAA,AAAGGA,AAGAAA,AAGAAG,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGG,AGAGAA,AGAGGA,GAAAGA,GAGAAG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
PUM2 3 1890 0.005555556 0.0027404447 1.019521 GUAAAU,UAGAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DAZAP1 1 36 0.09090909 0.002423369 5.229338 AGUUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AAAAGU AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 2 82 0.007142857 0.0004181782 4.094312 AAGAAG AAGAAG
PABPN1 3 178 0.009523810 0.0009018541 3.400573 AAAAGA,AGAAGA AAAAGA,AGAAGA
HNRNPA1L2 3 188 0.009523810 0.0009522370 3.322146 AUAGGG,GUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
ZCRB1 8 666 0.021428571 0.0033605401 2.672771 ACUUAA,AUUUAA,GACUUA,GAUUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAA,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AAAGAC,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,AUCAGU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
TRA2B 10 1447 0.026190476 0.0072954454 1.843974 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AGAAGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBMX 8 1316 0.021428571 0.0066354293 1.691274 AAGAAG,AAGUAA,AAGUGU,AGUGUU,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAAGAA,AAGAAA,AAGAAG,AGAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
PUM2 3 764 0.009523810 0.0038542926 1.305073 UACAUC,UAUAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AAAUUU,AAUUUU,AUUUUC,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAUUC,AAUACA,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAGAAG,AUAGCA,AUAGGG,AUUUAA,GUAGGG,UAGACU,UAGGGU AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
SRSF10 12 2937 0.030952381 0.0148024990 1.064210 AAAAGA,AAAGAA,AAAGAC,AAGAAA,AAGAAG,AAGAGA,AGAGAA,GAGAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
QKI 3 904 0.009523810 0.0045596534 1.062615 AUCUAC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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