ENSG00000106066:-:7:29064060:29072423

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000106066:-:7:29064060:29072423 ENSG00000106066 ENST00000409850 - 7 29064061 29072423 528 UCUUAUGCAGGGAAAUAUGUGCCAGCCAUUGCACACCUCAUCCAUUCCCUCAACCCUGUGAGAGAGGUGAAGAUCAACCUGAACGGAAUUGCUAUUGGAGAUGGAUAUUCUGAUCCCGAAUCAAUUAUAGGGGGCUAUGCAGAAUUCCUGUACCAAAUUGGCUUGUUGGAUGAGAAGCAAAAAAAGUACUUCCAGAAGCAGUGCCAUGAAUGCAUAGAACACAUCAGGAAGCAGAACUGGUUUGAGGCCUUUGAAAUACUGGAUAAACUACUAGAUGGCGACUUAACAAGUGAUCCUUCUUACUUCCAGAAUGUUACAGGAUGUAGUAAUUACUAUAACUUUUUGCGGUGCACGGAACCUGAGGAUCAGCUUUACUAUGUGAAAUUUUUGUCACUCCCAGAGGUGAGACAAGCCAUCCACGUGGGGAAUCAGACUUUUAAUGAUGGAACUAUAGUUGAAAAGUACUUGCGAGAAGAUACAGUACAGUCAGUUAAGCCAUGGUUAACUGAAAUCAUGAAUAAUUAUAAGUCUUAUGCAGGGAAAUAUGUGCCAGCCAUUGCACACCUCAUCCAUUCCCU circ
ENSG00000106066:-:7:29064060:29072423 ENSG00000106066 ENST00000409850 - 7 29064061 29072423 22 AUAAUUAUAAGUCUUAUGCAGG bsj
ENSG00000106066:-:7:29064060:29072423 ENSG00000106066 ENST00000409850 - 7 29072414 29072623 210 UGUGGUGCUAUUUGAGACGACAAAAGAAUUGGAAGACAGAGGUUUUUGCUAUUAUGGAAUCUAUAAUGUGGGGUUAAGAAACAGAUGGUAUACCUCAUGUGGAAAGAUUGCUCCUUCAUUGUUAUUUUAAUUAGCUUAAGUACAUUUAAUUUUACUAGCAUCCAUUUGUGAUUGGCCAUUUCAACAUCUGUCCUUCUCAGUCUUAUGCAG ie_up
ENSG00000106066:-:7:29064060:29072423 ENSG00000106066 ENST00000409850 - 7 29063861 29064070 210 UAAUUAUAAGGUAAGAGAGCUACUUCAGUUACUAUUUUAGGAACUUUCAGAUUACCCAGAGCAGAAGUGAUUUGUAAUUUGAGUCCUGCCUUUUUUUUUUUUUUAACUUUUAUGAUGUGUCAUUAGCAUAAAUAACAGCCCCUUUCUUUGUUUGAUUCCAAUUCAAAGUUUUAUAUUGUUCCUUUUAAUUUAACCACUUUUGCCGUUGUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 2 286 0.005681818 0.0004159215 3.771969 AACCUG AACCUG
HNRNPA1L2 1 314 0.003787879 0.0004564992 3.052706 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
TUT1 3 678 0.007575758 0.0009840095 2.944646 AAAUAC,AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM42 1 407 0.003787879 0.0005912752 2.679488 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
IGHMBP2 2 813 0.005681818 0.0011796520 2.267991 AAAAAA AAAAAA
AGO1 1 548 0.003787879 0.0007956130 2.251251 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC4 3 1251 0.007575758 0.0018144033 2.061895 AAAAAA,AAAAAG AAAAAA,AAAAAG
A1CF 4 1642 0.009469697 0.0023810421 1.991725 AUAAUU,GAUCAG,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM6 2 1054 0.005681818 0.0015289102 1.893849 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
G3BP2 3 1644 0.007575758 0.0023839405 1.668042 AGGAUG,GGAUAA,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 1 822 0.003787879 0.0011926949 1.667165 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPCL1 4 2062 0.009469697 0.0029897078 1.663314 AUUUUU,CUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
SNRNP70 2 1237 0.005681818 0.0017941145 1.663081 AAUCAA,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRP14 1 847 0.003787879 0.0012289250 1.623993 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
ESRP2 4 2150 0.009469697 0.0031172377 1.603050 GGGAAA,GGGAAU,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM41 2 1318 0.005681818 0.0019115000 1.571647 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM46 9 4554 0.018939394 0.0066011240 1.520607 AAUCAA,AAUCAU,AAUGAU,AUCAAU,AUCAUG,AUGAAU,AUGAUG,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SNRPB2 1 991 0.003787879 0.0014376103 1.397717 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RALY 2 1553 0.005681818 0.0022520629 1.335106 UUUUUG UUUUUC,UUUUUG,UUUUUU
ZCRB1 2 1605 0.005681818 0.0023274215 1.287620 ACUUAA,GACUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 2 1634 0.005681818 0.0023694485 1.261801 AAAAAA AAAAAA,UUUUUU
HNRNPC 5 3471 0.011363636 0.0050316361 1.175325 AUUUUU,CUUUUU,GGAUAU,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 9 5823 0.018939394 0.0084401638 1.166047 AAUGUU,AGAAUU,CAGAAU,CCAGAA,GAAUUG,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
EIF4B 1 1179 0.003787879 0.0017100607 1.147343 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
AGO2 2 1830 0.005681818 0.0026534924 1.098460 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 1 1222 0.003787879 0.0017723764 1.095705 AGAAGA AAAAGA,AGAAGA
KHDRBS2 2 1858 0.005681818 0.0026940701 1.076565 AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CELF2 2 1886 0.005681818 0.0027346479 1.054998 UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ACO1 1 1283 0.003787879 0.0018607779 1.025484 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 1 1283 0.003787879 0.0018607779 1.025484 CUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP1 1 30 0.09090909 0.002030390 5.484596 GUCUUA AGCUGU,CAUCUU,CCAUCU,CCUCUU,CUAUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUUCU,GGCUCC,GUCUUU,UACUUU,UAUUUU,UCCUCU,UCUAUC,UCUCUU,UCUUCU,UCUUUC,UUACUU,UUCUUC,UUCUUG,UUUCUU
ZFP36 1 126 0.09090909 0.008318051 3.450107 AUAAGU AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
ANKHD1 1 56 0.004761905 0.0002871826 4.051499 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 ACGACA ACGACA,ACGACG,AUGACA,AUGACG
CPEB4 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
DDX19B 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
EIF4A3 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAUC,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM6 1 191 0.004761905 0.0009673519 2.299426 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
A1CF 5 598 0.014285714 0.0030179363 2.242939 UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RALY 10 1117 0.026190476 0.0056328094 2.217116 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 9 1041 0.023809524 0.0052498992 2.181177 UUUUUU AAAAAA,UUUUUU
KHDRBS2 9 1051 0.023809524 0.0053002821 2.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 9 1071 0.023809524 0.0054010480 2.140228 UUUUUU UUUUCC,UUUUUC,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPU 9 1136 0.023809524 0.0057285369 2.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CPEB2 12 1487 0.030952381 0.0074969770 2.045670 CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 11 1381 0.028571429 0.0069629182 2.036809 CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AAGACA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NOVA1 11 1428 0.028571429 0.0071997179 1.988561 UCAGUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ELAVL3 15 1928 0.038095238 0.0097188634 1.970751 AUUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
KHDRBS3 11 1646 0.028571429 0.0082980653 1.783726 AAAUAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
NOVA2 9 1434 0.023809524 0.0072299476 1.719482 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
FXR2 4 730 0.011904762 0.0036829907 1.692589 AGACAG,AGACGA,GACAAA,GACAGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
KHDRBS1 12 1945 0.030952381 0.0098045143 1.658532 AUUUAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPC 12 2006 0.030952381 0.0101118501 1.614003 CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 59 9826 0.142857143 0.0495112858 1.528744 AAUUUA,AAUUUG,AAUUUU,AUUUAA,AUUUUA,CUUUCU,CUUUUA,CUUUUU,GUUUUA,GUUUUU,UAAUUU,UAUAUU,UAUUAU,UAUUGU,UAUUUG,UAUUUU,UCUUAU,UGAUUU,UUAAGU,UUAAUU,UUAUAU,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUUAAU,UUUACU,UUUAUA,UUUAUG,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AUUUAA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TIAL1 32 5597 0.078571429 0.0282043531 1.478087 AAUUUU,AGUUUU,AUUUUA,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUCAG,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 9 1711 0.023809524 0.0086255542 1.464850 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 UAUUUU,UUAUUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AGACGA,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 UAUUUU,UGAUUU,UUAUUU,UUGAUU,UUGUUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACGACA,AGACGA,GACGAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAGACA,AGACAG,AGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PPIE 47 9262 0.114285714 0.0466696896 1.292087 AAAUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUUAUA,AUUUAA,AUUUUA,UAAAUA,UAAUUA,UAAUUU,UAUAAU,UAUAUU,UAUUAU,UAUUUU,UUAAUU,UUAUAA,UUAUAU,UUAUUU,UUUAAU,UUUAUA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
TIA1 25 5140 0.061904762 0.0259018541 1.256995 CCUUUC,CUCCUU,CUUUUA,CUUUUG,CUUUUU,GUUUUA,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUUAU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGGGG,GUGGUG,UGUGAU,UGUGGG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUGUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SFPQ 32 7087 0.078571429 0.0357114067 1.137620 AGAGAG,AGAGGU,AGGAAC,GGAAGA,GGUAAG,GUAAGA,GUAAUU,GUGAUU,GUGGUG,UAAGAG,UAAUGU,UAAUUU,UGAUGU,UGAUUG,UGAUUU,UGGAAG,UUAAUU,UUGAUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AGAAUU,GAAUUG,GUACAU,UAAAUA,UAAUGU,UGUAAU,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUUCU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AAUUUA,AGGUAA,UAGGAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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