ENSG00000116539:-:1:155370503:155395553

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000116539:-:1:155370503:155395553 ENSG00000116539 ENST00000679097 - 1 155370504 155395553 678 CCCAAAGAGUCGAUUGAUCCAAUUAAAGAAAGAGAAGCUGGAGUAUACUCCAGGAGAGCAUGAAUAUGGAUUAUUUCCAGCGCCCAUUCAUGUUGGAAAGUAUCUAAGACAAAAGAGAAUUGACUUCCAGCUUCCUUAUGAUAUCCUUUGGCAGUGGAAACACAAUCAGCUAUACAAAAAGCCAGAUGUCCCACUAUAUAAGAAAAUUCGUUCAAAUGUCUACGUUGAUGUCAAACCCCUUUCUGGUUACGAAGCUACCACCUGUAACUGUAAGAAGCCAGAUGAUGACACCAGGAAGGGCUGUGUUGAUGACUGCCUCAAUAGAAUGAUCUUUGCUGAGUGUUCCCCCAACACUUGCCCAUGUGGCGAGCAAUGCUGUAACCAGAGGAUACAGAGGCAUGAAUGGGUGCAAUGUCUAGAACGAUUUCGAGCUGAGGAAAAAGGUUGGGGAAUCAGAACCAAAGAGCCCCUAAAAGCUGGGCAGUUCAUCAUUGAAUACCUAGGGGAGGUCGUCAGUGAACAGGAGUUCAGGAACAGGAUGAUUGAGCAGUAUCAUAAUCACAGUGACCACUACUGCCUGAACCUGGAUAGUGGGAUGGUGAUUGACAGUUACCGCAUGGGAAAUGAGGCCCGAUUCAUCAACCAUAGCUGUGACCCAAAUUGUGAAAUGCAGAAAUGCCCAAAGAGUCGAUUGAUCCAAUUAAAGAAAGAGAAGCUGGAGUAUACUC circ
ENSG00000116539:-:1:155370503:155395553 ENSG00000116539 ENST00000679097 - 1 155370504 155395553 22 AUGCAGAAAUGCCCAAAGAGUC bsj
ENSG00000116539:-:1:155370503:155395553 ENSG00000116539 ENST00000679097 - 1 155395544 155395753 210 GUAUUGGGAUUACAGGCGUGAACCCCCACGCCCAGCCAGGAGCCUCUUUCUUAAGGACAGUUUCAGAAGUAAAGAUUUUUUUUUUUAAUUUAUCAAUGUACUUGGUACCCUCUCCUCAUAGGAUGAUCUGUUAUCUGUAUUUGACCACAGGAGGAAAUUUCUUUGCCUCUUGACUGUUUCCCAUUCUUUUUUUAUCACAGCCCAAAGAGU ie_up
ENSG00000116539:-:1:155370503:155395553 ENSG00000116539 ENST00000679097 - 1 155370304 155370513 210 UGCAGAAAUGGUAAGGAAGCAAAAGAAGGUGAAGACAAGAAUCCAGCAGAAUAAGCAUUGAGUGCAGCAAGGGAUUGAUCUUUCCAGUGUCAGUCAGCUUACACAAAGCAGCUCAGGCUGUUCCCCAUUACCCCAGAUCCCACGGGCAGAGUAAGCUGCUUCGUUUUCACCCUAACUUCUCACUCCCAGACAGAUAUUUUUGUUUUUAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 286 0.002949853 0.0004159215 2.826260 AACCUG AACCUG
FXR1 1 411 0.002949853 0.0005970720 2.304666 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
AKAP1 1 426 0.002949853 0.0006188101 2.253074 UAUAUA AUAUAU,UAUAUA
RBFOX1 4 1077 0.007374631 0.0015622419 2.238953 AGCAUG,GCAUGA,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBFOX2 1 452 0.002949853 0.0006564894 2.167799 UGACUG UGACUG,UGCAUG
G3BP2 6 1644 0.010324484 0.0023839405 2.114650 AGGAUA,AGGAUG,GGAUAG,GGAUGA,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBMS1 1 497 0.002949853 0.0007217036 2.031165 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPAB 5 1782 0.008849558 0.0025839306 1.776038 AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ESRP2 6 2150 0.010324484 0.0031172377 1.727730 GGGAAA,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
ACO1 3 1283 0.005899705 0.0018607779 1.664737 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
SRSF11 1 688 0.002949853 0.0009985015 1.562806 AAGAAG AAGAAG
ZC3H10 2 1053 0.004424779 0.0015274610 1.534470 CAGCGC,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
NONO 3 1498 0.005899705 0.0021723567 1.441382 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
EIF4B 2 1179 0.004424779 0.0017100607 1.371558 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC5 5 2400 0.008849558 0.0034795387 1.346709 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM46 10 4554 0.016224189 0.0066011240 1.297363 AAUGAU,AUCAUA,AUCAUU,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC4 2 1251 0.004424779 0.0018144033 1.286110 AAAAAG AAAAAA,AAAAAG
SRP14 1 847 0.002949853 0.0012289250 1.263246 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBMS3 2 1283 0.004424779 0.0018607779 1.249699 CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CELF5 2 1415 0.004424779 0.0020520728 1.108523 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPK 1 16 0.09090909 0.001113440 6.351329 GCCCAA AAAAAA,ACCCCA,ACCCCC,ACCCGA,CAAACC,CAUACC,CCAACC,CCAUAC,CCCCAC,CCCCCU,CCCCUU,GCCCAC,GCCCAG,UCCCAC
MBNL1 1 36 0.09090909 0.002423369 5.229338 AUGCCC AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC
SRSF2 1 479 0.09090909 0.031438302 1.531901 AAUGCC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
RBM25 1 53 0.004761905 0.0002720677 4.129501 CGGGCA AUCGGG,CGGGCA,UCGGGC
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
HNRNPAB 4 351 0.011904762 0.0017734784 2.746885 AAGACA,ACAAAG,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
CPEB4 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
DDX19B 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
EIF4A3 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
G3BP2 4 490 0.011904762 0.0024738009 2.266737 AGGAUG,GGAUGA,GGAUUA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPCL1 12 1381 0.030952381 0.0069629182 2.152286 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
RALY 9 1117 0.023809524 0.0056328094 2.079612 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 8 1041 0.021428571 0.0052498992 2.029174 UUUUUU AAAAAA,UUUUUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 8 1071 0.021428571 0.0054010480 1.988224 UUUUUU UUUUCC,UUUUUC,UUUUUU
FXR2 5 730 0.014285714 0.0036829907 1.955624 AGACAA,AGACAG,GACAAG,GACAGA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CPEB2 11 1487 0.028571429 0.0074969770 1.930192 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ENOX1 5 756 0.014285714 0.0038139863 1.905202 AAGACA,AGACAG,AGGACA,CAGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
NOVA1 10 1428 0.026190476 0.0071997179 1.863030 CAGUCA,UCAGUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ELAVL3 11 1928 0.028571429 0.0097188634 1.555714 AUUUAU,UAUUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
TRA2B 8 1447 0.021428571 0.0072954454 1.554468 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGG,AGGAAA,AGGAAG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
DAZAP1 16 2878 0.040476190 0.0145052398 1.480499 AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUG,AGUAAA,AGUAAG,UAGGAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPK 18 3244 0.045238095 0.0163492543 1.468313 ACCCCA,ACCCCC,CCCCAC,CCCCAU,CCCCCA,GCCCAA,GCCCAG,UCCCAC,UCCCAU,UCCCCA,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 AUUUAU,UAUUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGAAG,AAGGAA,AAGUAA,AGAAGG,AGGAAG,AUCCCA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
FUS 8 1711 0.021428571 0.0086255542 1.312847 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 AUUUAU,UAUUUU,UGUUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AAAUUU,AUUUUU,CAGUUU,CUUUUU,GUUUUC,GUUUUU,UAUUUU,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 23 5140 0.057142857 0.0259018541 1.141518 AUUUUU,CUUUUU,GUUUUC,GUUUUU,UAUUUU,UCUCCU,UUUAUU,UUUUAU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACCACA,CAGCAA,CCAGCA,GAUCUG,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AGGAAG,CACAGC,GAGGAA,UGCAGA,UGCAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAGAAG,AAGGAA,AAUUUA,AGAUAU,AGGAGC,CAAGAA,CAAGGG,GGAGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAG,AGGAAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PCBP1 20 4891 0.050000000 0.0246473196 1.020497 ACCCUC,AUUACC,CACCCU,CCAUUA,CCAUUC,CCCCAC,CCCUCU,CCUAAC,CCUCUU,CUUUCC,UCCCCA,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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