ENSG00000168246:-:5:172234121:172234358

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000168246:-:5:172234121:172234358 ENSG00000168246 ENST00000393792 - 5 172234122 172234358 237 UUGCUCUAGGUCGUAACCAGCCUUUGAAAAAGGAGAAACCAAAAUGGAAAAGCGAUUAUCCUAUGACAGAUGGACAACUACGCAGCAAGAGGGAUGAAUUUUGGGAUACAGCACCAGCUUUUGAAGGCCGGAAAGAGAUUUGGGAUGCCUUGAAGGCUGCUGCACAUGCUUUUGAGAGCAAUGAUCAUGAACUGGCACAAGCAAUCAUUGAUGGUGCAAACAUAACAUUACCACAUGUUGCUCUAGGUCGUAACCAGCCUUUGAAAAAGGAGAAACCAAAAUGGAAA circ
ENSG00000168246:-:5:172234121:172234358 ENSG00000168246 ENST00000393792 - 5 172234122 172234358 22 AUUACCACAUGUUGCUCUAGGU bsj
ENSG00000168246:-:5:172234121:172234358 ENSG00000168246 ENST00000393792 - 5 172234349 172234558 210 CAUAGAGCAGUCUAAUGUCUCUAUUCACUUUUGUAGUUCCAAAAUGUGUUAGAGGAAUUUCAGGAUGCACAAAUUAGCUAGCAGGUAAAUUUCUGGCUGUGAUUUUGAUGAAAUAAUCCAAGAGAGGAAUGACCAGAUAACUUUUGAUACAUAUUUUAUAAAUUUUGGGUUUGAUCUCAGUCUUUUAUUUUUCUUUUCAGUUGCUCUAGG ie_up
ENSG00000168246:-:5:172234121:172234358 ENSG00000168246 ENST00000393792 - 5 172233922 172234131 210 UUACCACAUGGUAGGUUUGGUGUUCCUCAAGGACAGAGGAAACAUAAUCAACUUUGUUUCUGAUAGCAAGAAACCAAAUGGGAGAGUGUUUUUCCUUGCUAUGAAUUAUUCUAACUUUUUUUUUUAAUGUAGCAAGGAAUAGCAUUCCUCUUUUUUUCUUGUACAUCUUUCAGCUGGAGACAGGUUUUACUUUGUGUGUUUGUGUAUACG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.008438819 0.0002275250 5.212944 AGGGAU AGGGAU
RBM42 2 407 0.012658228 0.0005912752 4.420102 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
CNOT4 1 314 0.008438819 0.0004564992 4.208357 GACAGA GACAGA
FXR1 1 411 0.008438819 0.0005970720 3.821064 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 1 831 0.008438819 0.0012057377 2.807125 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBM46 7 4554 0.033755274 0.0066011240 2.354329 AAUCAU,AAUGAU,AUCAUG,AUCAUU,AUGAAU,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC4 1 1251 0.008438819 0.0018144033 2.217546 AAAAAG AAAAAA,AAAAAG
HNRNPA3 2 2140 0.012658228 0.0031027457 2.028458 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
YBX2 1 1480 0.008438819 0.0021462711 1.975209 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
A1CF 1 1642 0.008438819 0.0023810421 1.825448 UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 1 1644 0.008438819 0.0023839405 1.823693 GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
FXR2 3 3434 0.016877637 0.0049780156 1.761470 GACAGA,GGACAA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPLL 3 3534 0.016877637 0.0051229360 1.720070 ACCACA,CAAACA,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
YTHDC1 5 5576 0.025316456 0.0080822104 1.647254 GGAUAC,GGAUGC,GGCUGC,UGCUGC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SRSF9 20 20254 0.088607595 0.0293536261 1.593892 AGGAGA,AUGAAC,AUGACA,GAAGGC,GAUGCC,GAUGGA,GGAAAA,GGAAAG,GGACAA,GGAGAA,GGAUGC,GGUGCA,UGAAAA,UGAAGG,UGACAG,UGAGAG,UGAUGG,UGGUGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
ENOX1 2 3195 0.012658228 0.0046316558 1.450475 AUACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SRSF10 11 13860 0.050632911 0.0200874160 1.333783 AAAGAG,AAAGGA,AAGAGA,AAGAGG,AAGGAG,AGAGGG,GAAAGA,GAGAAA,GAGAGC,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPL 3 5085 0.016877637 0.0073706513 1.195249 ACAUAA,ACCACA,CACAAG AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
SRSF7 10 14481 0.046413502 0.0209873716 1.145023 AAAGGA,AAUGAU,ACUACG,AGAGAU,AUUGAU,GAAGGC,GGACAA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SART3 1 2634 0.008438819 0.0038186524 1.143977 GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
QKI 1 2805 0.008438819 0.0040664663 1.053265 AAUCAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
LIN28A 2 4315 0.012658228 0.0062547643 1.017048 AGGAGA,GGAGAA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
NONO 7 364 0.019047619 0.0018389762 3.372636 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUUCAG UUCAGA,UUUCAG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CPEB4 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
DDX19B 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
EIF4A3 7 691 0.019047619 0.0034864974 2.449760 UUUUUU UUUUUU
U2AF2 11 1071 0.028571429 0.0054010480 2.403262 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
CELF5 6 669 0.016666667 0.0033756550 2.303726 GUGUGU,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 7 776 0.019047619 0.0039147521 2.282618 GGUGUU,GUGUGU,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RALY 10 1117 0.026190476 0.0056328094 2.217116 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAAAU,GUACAU,UACAUA,UACAUC,UGUACA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
CSTF2 8 1022 0.021428571 0.0051541717 2.055723 GUGUGU,GUGUUU,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF1 8 1097 0.021428571 0.0055320435 1.953651 GUGUGU,GUUUGU,UGUGUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACAU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 UUUUUU AAAAAA,UUUUUU
KHDRBS2 7 1051 0.019047619 0.0053002821 1.845470 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPC 14 2006 0.035714286 0.0101118501 1.820454 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 10 1487 0.026190476 0.0074969770 1.804661 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PUM1 15 2172 0.038095238 0.0109482064 1.798916 ACAUAA,AGAUAA,CUUGUA,GUAAAU,GUACAU,UAAUGU,UACAUA,UACAUC,UGUACA,UGUAUA,UUAAUG,UUGUAC,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TIAL1 40 5597 0.097619048 0.0282043531 1.791245 AAAUUU,AAUUUU,AUUUUA,AUUUUG,AUUUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAGAAA,AGAGGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPU 7 1136 0.019047619 0.0057285369 1.733372 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AUCAAC,UCAGUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 9 1434 0.023809524 0.0072299476 1.719482 AUCAAC,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
FXR2 4 730 0.011904762 0.0036829907 1.692589 AGACAG,GACAGA,GACAGG,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CELF2 5 881 0.014285714 0.0044437727 1.684716 AUGUGU,GUGUGU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AGACAG,AGGACA,GGACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
TIA1 32 5140 0.078571429 0.0259018541 1.600949 AUUUUG,AUUUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS3 9 1646 0.023809524 0.0082980653 1.520692 AAAUAA,AGAUAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 UAUUUU,UCUAAU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBM24 4 888 0.011904762 0.0044790407 1.410277 AGAGUG,GAGUGU,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
FUS 8 1711 0.021428571 0.0086255542 1.312847 UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 CAAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAUUUU,UGAUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PTBP1 40 8003 0.097619048 0.0403264813 1.275435 ACUUUU,AUUUUU,CAUCUU,CCUCUU,CUCUUU,CUUUUC,CUUUUU,GCUGUG,GUCUUU,UACUUU,UAUUUU,UCCUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCUU,UUCUUG,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
ELAVL2 46 9826 0.111904762 0.0495112858 1.176442 AAUUUU,AUAUUU,AUUAUU,AUUUUA,AUUUUG,AUUUUU,CUUUUA,CUUUUU,GAUUUU,GUUUUA,GUUUUU,UACUUU,UAUUUU,UCUUUU,UGAUUU,UUACUU,UUAUUU,UUCUUU,UUUAAU,UUUACU,UUUAUA,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAA,AUGAAA,AUGAAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUCUU,CUCUUU,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAGGAA,AUAGCA,CAAGAA,CAAGGA,CCAAGA,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
SRSF10 12 2937 0.030952381 0.0148024990 1.064210 AAGAAA,AAGAGA,AAGGAA,AGAGAG,AGAGGA,GAGACA,GAGAGG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SFPQ 29 7087 0.071428571 0.0357114067 1.000116 AAGGAA,AAGGAC,AGAGAG,AGAGGA,CUGGAG,GAGAGG,GAGGAA,GGAGAG,GUAGUU,GUGAUU,UAAUGU,UGAUUU,UGGAGA,UGGUGU,UUAAUG,UUGAUG,UUGGUG,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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