ENSG00000136381:+:15:78465250:78483434

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000136381:+:15:78465250:78483434 ENSG00000136381 ENST00000258886 + 15 78465251 78483434 1141 UGGAAUACCAGCAAUGGUGGAUUUUGCUGCUAUGAGGGAGGCAGUGAAAACUCUUGGAGGUGAUCCUGAGAAAGUCCAUCCUGCUUGUCCGACAGAUCUUACAGUUGACCAUUCUUUACAAAUUGACUUCAGUAAAUGUGCAAUACAGAAUGCACCAAAUCCUGGAGGUGGUGACCUGCAGAAAGCAGGAAAGCUCUCUCCACUUAAAGUGCAGCCUAAGAAGCUUCCCUGCAGAGGCCAGACUACCUGCCGAGGAUCUUGUGAUUCUGGAGAACUAGGCCGAAACUCAGGAACAUUUUCUUCGCAGAUUGAGAAUACACCCAUCCUGUGUCCUUUUCAUUUGCAACCAGUGCCUGAACCUGAAACAGUGUUAAAAAAUCAAGAAGUAGAAUUCGGCAGAAAUCGAGAGAGGCUUCAGUUUUUUAAGUGGAGUUCAAGAGUUUUUAAGAAUGUGGCAGUGAUCCCUCCUGGAACUGGAAUGGCUCAUCAAAUAAACUUAGAAUAUUUGUCAAGAGUGGUUUUUGAAGAAAAAGACCUCCUCUUCCCAGACAGUGUAGUCGGCACAGAUUCACACAUAACGAUGGUGAAUGGUUUAGGGAUUCUGGGGUGGGGGGUUGGAGGCAUUGAAACAGAAGCAGUUAUGCUUGGUCUGCCAGUUUCUCUUACUUUACCAGAGGUGGUUGGAUGUGAGUUAACUGGGUCAUCAAACCCUUUUGUUACAUCCAUAGAUGUUGUUCUUGGUAUUACAAAGCACCUCAGGCAAGUAGGAGUGGCUGGAAAGUUUGUUGAGUUUUUUGGAAGUGGAGUUUCACAAUUAUCUAUAGUUGAUCGAACUACAAUAGCAAACAUGUGUCCGGAAUAUGGUGCUAUCCUCAGCUUUUUCCCUGUUGACAAUGUGACAUUAAAACAUUUAGAACAUACAGGUUUUAGCAAAGCCAAACUCGAAUCAAUGGAAACAUACCUUAAAGCUGUGAAAUUGUUUCGAAAUGACCAGAAUUCUUCAGGAGAACCUGAAUACUCCCAGGUGAUCCAGAUUAAUCUGAAUUCAAUAGUUCCAUCUGUUAGUGGUCCAAAAAGACCUCAGGAUAGAGUUGCUGUGACAGAUAUGAAAAGCGAUUUCCAGGCUUGCUUAAAUGAAAAGUGGAAUACCAGCAAUGGUGGAUUUUGCUGCUAUGAGGGAGGCAGUGAAAA circ
ENSG00000136381:+:15:78465250:78483434 ENSG00000136381 ENST00000258886 + 15 78465251 78483434 22 UAAAUGAAAAGUGGAAUACCAG bsj
ENSG00000136381:+:15:78465250:78483434 ENSG00000136381 ENST00000258886 + 15 78465051 78465260 210 CAAGUACUUCAGUUCUCAGAUAAUGUUUAAUGUUAAUUCUUAUUAAACAGGAUACUCCUAACUUAUAAAGUACAUUAUGAAAAAUGAAUGUAAACUAGACAGGGAUACUUUUUAAAAUAUGAAAAUGAAAAAGUUUAUCAUUUAUUAAGCAUGUAUAAAAAACAAUUUGGACUAUAAUUUGACCAUUCUUUAUUUUUUAGUGGAAUACCA ie_up
ENSG00000136381:+:15:78465250:78483434 ENSG00000136381 ENST00000258886 + 15 78483425 78483634 210 AAAUGAAAAGGUAGGUUACUUUAUUCUUAUCCGUGUUUUUCAACCCGCUUUGUGCUAAGUAGUAAAGAACCAACAAGGUGACCCAUAAACUCAAUUCACUGCUAUGUUUUAUAUAUUAUGGCACACACCAGCAGCCCCCUUAUUUUCCUUCUGUCUAAUGUGCAAGUCAGUCAUUAGGUAAGCUUGUUCCCAGUUCCAUUGUGAGGAUCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.001752848 0.0002275250 2.945604 AGGGAU AGGGAU
NXF1 2 286 0.002629273 0.0004159215 2.660280 AACCUG AACCUG
CNOT4 2 314 0.002629273 0.0004564992 2.525979 GACAGA GACAGA
HNRNPA1L2 2 314 0.002629273 0.0004564992 2.525979 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
PTBP2 1 267 0.001752848 0.0003883867 2.174136 CUCUCU CUCUCU
HNRNPA0 2 453 0.002629273 0.0006579386 1.998639 AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
RBM28 4 822 0.004382121 0.0011926949 1.877404 AGUAGA,AGUAGG,GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SNRNP70 6 1237 0.006134969 0.0017941145 1.773784 AAUCAA,AUCAAG,AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM42 1 407 0.001752848 0.0005912752 1.567800 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
ACO1 5 1283 0.005258545 0.0018607779 1.498758 CAGUGA,CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
TUT1 2 678 0.002629273 0.0009840095 1.417920 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 2 688 0.002629273 0.0009985015 1.396827 AAGAAG AAGAAG
EIF4B 4 1179 0.004382121 0.0017100607 1.357582 CUUGGA,GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
MATR3 2 739 0.002629273 0.0010724109 1.293806 AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZNF638 6 1773 0.006134969 0.0025708878 1.254789 GGUUGG,GUUCUU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RALY 5 1553 0.005258545 0.0022520629 1.223417 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
CPEB4 2 821 0.002629273 0.0011912456 1.142193 UUUUUU UUUUUU
DDX19B 2 821 0.002629273 0.0011912456 1.142193 UUUUUU UUUUUU
EIF4A3 2 821 0.002629273 0.0011912456 1.142193 UUUUUU UUUUUU
IGF2BP1 2 831 0.002629273 0.0012057377 1.124748 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
IGF2BP2 28 8408 0.025416301 0.0121863560 1.060487 AAAACA,AAAAUC,AAACUC,AAAUCA,AACUCA,AAUACA,AAUUCA,ACAUAC,CAAACA,CAAAUC,CAAUAC,CACACA,CAUACA,CCAAAC,CCAUUC,GAAAAC,GAAAUC,GAAUAC,GAAUUC,GCAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
TARDBP 8 2654 0.007887818 0.0038476365 1.035654 GAAUGG,GAAUGU,GUGAAU,GUUGUU,UGAAUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
U2AF2 4 1477 0.004382121 0.0021419234 1.032722 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PABPC5 7 2400 0.007011394 0.0034795387 1.010805 AGAAAA,AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP3 15 4815 0.014022787 0.0069793662 1.006605 AAAACA,AAAAUC,AAACUC,AAAUCA,AACUCA,AAUACA,AAUUCA,ACAUAC,CAAACA,CACACA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO2 1 10 0.09090909 0.0007204611 6.979360 AAAGUG AAAAAA,AAAGUG,UAAAGU
ZFP36 1 126 0.09090909 0.0083180508 3.450107 AAAAGU AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
TUT1 2 230 0.007142857 0.0011638452 2.617602 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM41 5 502 0.014285714 0.0025342604 2.494937 AUACUU,UACAUU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPLL 6 748 0.016666667 0.0037736800 2.142922 ACACAC,ACACCA,CACACA,CACACC,CACUGC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM46 9 1091 0.023809524 0.0055018138 2.113560 AAUGAA,AUCAUU,AUGAAA,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUACAU,UAUAUA,UGUAAA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CCUUCU,CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PUM1 12 2172 0.030952381 0.0109482064 1.499356 AAUGUU,AGAUAA,GUACAU,UAAUGU,UAUAUA,UGUAAA,UGUAUA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
IGF2BP3 7 1348 0.019047619 0.0067966546 1.486714 AAAAAC,AAAACA,AAACUC,AACUCA,AAUUCA,ACACAC,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
IGF2BP2 11 2163 0.028571429 0.0109028617 1.389866 AAAAAC,AAAACA,AAACUC,AACUCA,AAUUCA,ACACAC,CAAUUC,CACACA,CCAUUC,GAAUAC,GCACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAAAAA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGACAG,AGUACA,UAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPDL 13 2689 0.033333333 0.0135530028 1.298353 AAUACC,ACACCA,ACAUUA,ACUAGA,ACUUUA,AUACCA,AUUAGG,CACCAG,CAUUAG,CUAACU,CUAAGU,GGACUA,UAAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL4 14 2916 0.035714286 0.0146966949 1.281010 AAAAAA,AUUUAU,UAUUUU,UCUAAU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAACAA,ACACAC,ACACCA,CACACA,CACACC,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GAAUGU,UGAAUG,UUGUGC,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PPIE 43 9262 0.104761905 0.0466696896 1.166556 AAAAAA,AAAAAU,AAAAUA,AAAUAU,AUAAAA,AUAAUU,AUAUAU,AUAUUA,AUUAAA,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUU,UUAAAA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,GGAUAC,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACAC,ACUUAU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAA,AGGUAG,AGGUUA,GUAAAG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUG,AUACUU,AUUUAU,AUUUUC,AUUUUU,CUUAUA,CUUUUU,GUUUUA,GUUUUU,UAAUUU,UACUUU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUUU,UCAUUU,UCUUAU,UUAAUU,UUACUU,UUAUAU,UUAUUU,UUCUUU,UUUAAU,UUUAGU,UUUAUA,UUUAUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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