ENSG00000150760:+:10:127008731:127061776

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000150760:+:10:127008731:127061776 ENSG00000150760 MSTRG.4806.1 + 10 127008732 127061776 1353 UGAUGGAUGUAACAGAUAUAAUAAAUGGAAAAGUAGAUGAUGAAGAUAAGCAGCAUUUCAUUCCCUUUCAGCCGCUCGCGUUGGACGACGCCAUUCGACACAAGCCGCUGAACAUGUCAUCCCGUUUUUCACCCAGGGUGGCAGGGGAGAAUGACUUCCUUCAGACUGUUAUAAACAAAGUCAUCGCUGCCAAAGAAGUCAACCACAAGGGGCAGGGUUUGUGGGUAACAUUGAAAUUACUUCCUGGAGAUAUCCAUCAGAUCCGAAAAGAGUUUCCGCAUUUAGUGGACAGGACCACAGCUGUGGCUCGAAAAACAGGGUUUCCGGAGAUAAUCAUGCCUGGUGAUGUUCGAAAUGAUAUCUAUGUAACAUUAGUUCAAGGAGAUUUUGAUAAAGGAAGCAAAACAACAGCGAAGAACGUGGAGGUCACGGUGUCUGUGUACGAUGAGGAUGGGAAACGAUUAGAGCAUGUGAUUUUCCCGGGUGCUGGUGAUGAAGCGAUUUCAGAGUACAAAUCUGUGAUUUACUACCAAGUAAAGCAGCCACGCUGGUUUGAGACUGUUAAGGUGGCCAUUCCCAUCGAGGACGUUAACCGCAGUCACCUUCGGUUUACCUUCCGCCACAGGUCAUCACAGGACUCUAAGGAUAAAUCUGAGAAAAUAUUUGCACUAGCAUUUGUCAAGCUGAUGAGAUACGAUGGUACCACCCUGCGAGACGGAGAGCACGAUCUUAUCGUCUAUAAGGCCGAAGCAAAGAAGCUGGAAGAUGCUGCCACGUACUUGAGUCUGCCCUCCACGAAGGCAGAGUUGGAAGAAAAGGGCCACUCGGCCACCGGCAAGAGCAUGCAGAGCCUUGGGAGCUGCACCAUUAGCAAGGACUCCUUCCAGAUCUCCACGCUCGUGUGCUCCACCAAACUGACUCAGAACGUGGACCUUCUGGGGCUCUUGAAAUGGCGCUCCAACACCAGCCUGCUGCAGCAGAACUUGAGGCAGCUGAUGAAAGUCGAUGGUGGUGAAGUAGUGAAGUUUCUUCAGGACACGUUGGAUGCCCUCUUCAACAUCAUGAUGGAGAACUCAGAGAAAACACUUUAGUGCAACGUUAGCCUACACGAAGUUGACAAAAGUGUUGAAGAACUACGUGGACGGUGCUGAGAAGCCGGGAGUAAAUGAGCAGCUGUACAAAGCCAUGAAAGCGCUAGAAUCCAUCUUCAAGUUCAUCGUGCGCUCCAGGAUCCUGUUCAAUCAACUGUAUGAAAACAAGGGAGAGGCUGACUUCGUGGAAUCUUUGCUGCAGCUCUUCAGGUCCAUCAAUGACAUGAUGAGCAGCAUGUCAGACCAGACCGUCCGGGUGAAGUGAUGGAUGUAACAGAUAUAAUAAAUGGAAAAGUAGAUGAUGAAGAUAAG circ
ENSG00000150760:+:10:127008731:127061776 ENSG00000150760 MSTRG.4806.1 + 10 127008732 127061776 22 UCCGGGUGAAGUGAUGGAUGUA bsj
ENSG00000150760:+:10:127008731:127061776 ENSG00000150760 MSTRG.4806.1 + 10 127008532 127008741 210 UUGAGCCCCAAUUCCAUUUGGGCCAGCAUUUUCUGAUAACUUAAUUUGUCUUUCAAGCAUGGAAAUAAUUUAGACUUGACUAUGAGAAAACAGCUUUUGCUGUUGUUUGCCAGAAGAUAUUCUGAUGUUCCUUUGUUUGUUUGUGUUCUGUGAUUAUAGCAUUUAAGCCAAAACAAUCUCUGUUCUCUUUUUGUCUCCAGUGAUGGAUGU ie_up
ENSG00000150760:+:10:127008731:127061776 ENSG00000150760 MSTRG.4806.1 + 10 127061767 127061976 210 CCGGGUGAAGGUGAGUGCCGGCCACUGCCAAGGCAGACUUCUCCUUCUUUUUUUCUUUCAUUAUCUCUUUUGGAGGUAGGUAUUUUGAUUACAGUUAAUUAACUUGCCCCAAAUACCAUAGUUGUUAAUGUCAGAGAUCUCAAUUUGAUUUCAAGAGCUGUGCUUUUUUUUUUUUUUUUUUUUUUUUUGAGACAGAAUCCUGCUCUGUUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 4 632 0.003695492 0.0009173461 2.010228 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM42 2 407 0.002217295 0.0005912752 1.906899 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 2 411 0.002217295 0.0005970720 1.892824 ACGACG,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA0 2 453 0.002217295 0.0006579386 1.752776 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBFOX1 6 1077 0.005173688 0.0015622419 1.727575 AGCAUG,GCAUGC,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PABPC3 7 1234 0.005912786 0.0017897669 1.724066 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ANKHD1 1 339 0.001478197 0.0004927293 1.584971 GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
MATR3 3 739 0.002956393 0.0010724109 1.462980 AAUCUU,AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 5 1179 0.004434590 0.0017100607 1.374753 GUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM8A 2 611 0.002217295 0.0008869128 1.321936 GUGCGC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SNRNP70 5 1237 0.004434590 0.0017941145 1.305529 AAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM46 19 4554 0.014781966 0.0066011240 1.163055 AAUCAA,AAUCAU,AAUGAU,AUCAAU,AUCAUG,AUGAAA,AUGAAG,AUGAUA,AUGAUG,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SRSF11 2 688 0.002217295 0.0009985015 1.150964 AAGAAG AAGAAG
RBMS1 1 497 0.001478197 0.0007217036 1.034360 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF6 1 7 0.09090909 0.0005239717 7.438792 GUGAUG GUGAGG,GUGUUG,UGUGGG,UGUGUG
SFPQ 1 153 0.09090909 0.0100864553 3.172005 GUGAUG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF2 1 479 0.09090909 0.0314383023 1.531901 GUGAUG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CPEB4 22 691 0.054761905 0.0034864974 3.973322 UUUUUU UUUUUU
DDX19B 22 691 0.054761905 0.0034864974 3.973322 UUUUUU UUUUUU
EIF4A3 22 691 0.054761905 0.0034864974 3.973322 UUUUUU UUUUUU
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
RALY 25 1117 0.061904762 0.0056328094 3.458124 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
U2AF2 23 1071 0.057142857 0.0054010480 3.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
SYNCRIP 22 1041 0.054761905 0.0052498992 3.382811 UUUUUU AAAAAA,UUUUUU
KHDRBS2 22 1051 0.054761905 0.0053002821 3.369032 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPCL1 27 1381 0.066666667 0.0069629182 3.259202 CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPU 22 1136 0.054761905 0.0057285369 3.256934 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CPEB2 26 1487 0.064285714 0.0074969770 3.100117 CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA1 23 1428 0.057142857 0.0071997179 2.988561 UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 23 1434 0.057142857 0.0072299476 2.982516 GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
KHDRBS3 23 1646 0.057142857 0.0082980653 2.783726 AAAUAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPC 28 2006 0.069047619 0.0101118501 2.771545 CUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 23 1711 0.057142857 0.0086255542 2.727884 GGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
KHDRBS1 24 1945 0.059523810 0.0098045143 2.601949 AUUUAA,GAAAAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL3 23 1928 0.057142857 0.0097188634 2.555714 UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ELAVL1 33 3309 0.080952381 0.0166767432 2.279236 UAUUUU,UGAUUU,UUGAUU,UUGUUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
DAZAP1 27 2878 0.066666667 0.0145052398 2.200391 AAUUUA,AGAUAU,AGGUAG,AGUUAA,UAGGUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ELAVL4 23 2916 0.057142857 0.0146966949 1.959081 UAUUUU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CELF1 8 1097 0.021428571 0.0055320435 1.953651 GUUUGU,UGUGUU,UGUUGU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
TIA1 41 5140 0.100000000 0.0259018541 1.948873 AUUUUC,AUUUUG,CUCCUU,CUUUUG,CUUUUU,UAUUUU,UCCUUU,UCUCCU,UUCUCC,UUUUCU,UUUUGG,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPK 24 3244 0.059523810 0.0163492543 1.864242 CCCCAA,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 AGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM4 6 1094 0.016666667 0.0055169287 1.595028 CCUUCU,CUCUUU,CUUCUU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CCUUCU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PTBP1 49 8003 0.119047619 0.0403264813 1.561739 AGCUGU,AUUUUC,CUCUUU,CUUCUC,CUUCUU,CUUUUU,GCUGUG,GUCUUU,UAUUUU,UCUCUU,UCUUUC,UCUUUU,UUCCUU,UUCUCU,UUCUUU,UUUCUU,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
PCBP2 25 4164 0.061904762 0.0209844821 1.560728 AAUUAA,AAUUCC,AUUCCA,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
TIAL1 33 5597 0.080952381 0.0282043531 1.521156 AUUUUC,AUUUUG,CUUUUG,CUUUUU,UAUUUU,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,ACUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PCBP1 27 4891 0.066666667 0.0246473196 1.435535 AAUUAA,AAUUCC,AUUCCA,CCCCAA,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
ELAVL2 55 9826 0.133333333 0.0495112858 1.429208 AAUUUA,AAUUUG,AUUUAA,AUUUAG,AUUUUC,AUUUUG,CAUUUU,CUUUUU,UAAUUU,UAUUUU,UCUUUU,UGAUUU,UUAAUU,UUCAUU,UUCUUU,UUGAUU,UUUAAG,UUUCAU,UUUCUU,UUUGAU,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUUGUU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SFPQ 39 7087 0.095238095 0.0357114067 1.415154 AAGAGC,GAGGUA,GUGAUG,GUGAUU,UAAUGU,UAAUUU,UAGUUG,UGAUGG,UGAUGU,UGAUUU,UGGAGG,UUAAUG,UUAAUU,UUGAUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
HNRNPA1 34 6340 0.083333333 0.0319478033 1.383177 AAGGUG,AAUUUA,AGAUAU,AUAGCA,AUUUAA,CCAAGG,GAAGGU,GCCAAG,GUAGGU,UAGACU,UAGGUA,UUUAGA,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
MBNL1 13 3258 0.033333333 0.0164197904 1.021530 CCUGCU,CUGCCA,CUGCUC,GCUUUU,GUGCUU,UGCUGU,UGCUUU,UGUCUC,UUGCCA,UUGCCC,UUGCUG,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
FMR1 22 5430 0.054761905 0.0273629585 1.000948 UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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