ENSG00000166813:-:15:89645012:89649941

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000166813:-:15:89645012:89649941 ENSG00000166813 ENST00000696512 - 15 89645013 89649941 1863 CCUCCCUCCUUGAGGAUGAGCAGGGCAUUGUCCCGAGGGCCAUGGCCGAGGCCUUCAAGCUCAUCGAUGAGAACGACCUGCUUGACUGUCUGGUACAUGUGUCCUACCUGGAAGUGUACAAGGAGGAGUUCCGAGACCUGCUCGAGGUGGGCACUGCCAGCCGUGACAUCCAGCUCCGGGAAGAUGAGCGCGGGAAUGUUGUGCUGUGCGGGGUGAAGGAGGUCGACGUGGAGGGCCUGGAUGAGGUGCUGAGCCUCCUGGAGAUGGGCAACGCGGCGCGGCACACGGGAGCCACGCACCUCAACCACCUGUCUAGCCGCUCACACACGGUCUUCACCGUGACCCUGGAGCAGCGGGGGCGCGCCCCCAGCCGCCUACCCCGCCCCGCCCCGGGCCAGCUGCUCGUCUCCAAGUUCCACUUCGUGGACCUGGCGGGCUCAGAGAGGGUGCUCAAGACGGGCAGCACCGGCGAGCGGCUCAAGGAGAGCAUCCAGAUCAACAGCAGCCUCCUGGCGCUGGGCAACGUCAUCAGCGCCCUGGGGGACCCUCAGCGCCGGGGCAGCCACAUACCCUACCGCGACUCCAAGAUCACCCGGAUCCUCAAAGACUCGCUGGGCGGGAACGCCAAGACGGUGAUGAUCGCCUGCGUCAGCCCUUCCUCCUCCGACUUCGACGAGACCCUCAACACCCUCAACUACGCCAGCCGCGCCCAGAACAUCCGCAACCGCGCCACGGUCAACUGGCGGCCCGAGGCCGAGCGGCCACCCGAAGAGACGGCGAGCGGCGCGCGGGGUCCGCCACGGCACCGCUCCGAGACCCGCAUCAUCCACCGCGGCCGGCGCGCCCCAGGCCCAGCCACCGCCUCCGCGGCGGCCGCCAUGCGCCUGGGCGCCGAGUGCGCGCGCUACCGGGCCUGCACCGACGCCGCCUACAGCCUCUUGCGCGAGCUGCAGGCCGAGCCCGGGCUGCCCGGCGCCGCCGCCCGCAAGGUGCGCGACUGGCUGUGCGCCGUCGAGGGCGAGCGCAGCGCCCUGAGCUCCGCCUCCGGGCCCGAUAGCGGCAUCGAGAGCGCCUCCGUCGAGGACCAGGCGGCGCAGGGGGCCGGCGGGCGAAAGGAGGAUGAGGGGGCGCAGCAGCUGCUGACCCUGCAGAACCAGGUGGCGCGGCUGGAGGAGGAGAACCGAGACUUUCUGGCUGCGCUGGAGGACGCCAUGGAGCAGUACAAACUGCAGAGCGACCGGCUGCGUGAGCAGCAGGAGGAGAUGGUGGAACUGCGGCUGCGGUUAGAGCUGGUGCGGCCAGGCUGGGGGGGCCCGCGGCUCCUGAAUGGCCUGCCUCCCGGGUCCUUUGUGCCUCGACCUCAUACAGCCCCCCUGGGGGGUGCCCACGCCCAUGUGCUGGGCAUGGUGCCGCCUGCCUGCCUCCCUGGAGAUGAAGUUGGCUCUGAGCAGAGGGGAGAGCAGGUGACAAAUGGCAGGGAGGCUGGAGCUGAGUUGCUGACUGAGGUGAACAGGCUGGGAAGUGGCUCUUCAGCUGCUUCAGAGGAGGAAGAGGAGGAGGAGGAGCCGCCCAGGCGGACCUUACACCUGCGCAGAAAUAGGAUCAGCAACUGCAGUCAGAGGGCGGGGGCACGCCCAGGGAGUCUGCCAGAGAGGAAGGGCCCAGAGCUUUGCCUUGAGGAGUUGGAUGCAGCCAUUCCAGGGUCCAGAGCAGUUGGUGGGAGCAAGGCCCGAGUUCAGGCCCGCCAGGUCCCCCCUGCCACAGCCUCAGAGUGGCGGCUGGCCCAGGCCCAGCAGAAGAUCCGGGAGCUGGCUAUCAACAUCCGCAUGAAGGAGGAGCUUAUUGGCGAGCUGGUCCGCACAGCCUCCCUCCUUGAGGAUGAGCAGGGCAUUGUCCCGAGGGCCAUGGCCGAG circ
ENSG00000166813:-:15:89645012:89649941 ENSG00000166813 ENST00000696512 - 15 89645013 89649941 22 GGUCCGCACAGCCUCCCUCCUU bsj
ENSG00000166813:-:15:89645012:89649941 ENSG00000166813 ENST00000696512 - 15 89649932 89650141 210 UCUUAAAUUUUAUAAUUCUGCCUGACCACGCUGGAGCAUGGCCAAGCUCAGGCCACCUGUCCCAUCCUGGCCUCGGCCACUGCCUUCUCCAUCCUAGAGCACCAUCCUCCAGCUCUGGCAGGGGCCUAUGAGCUUCCGGGCCUGGGGGCCAUGGGCCGUGUCCAGCUGAAGUGGCAGGAGGCCCUGCGGUGUCUCCCCAGCCUCCCUCCU ie_up
ENSG00000166813:-:15:89645012:89649941 ENSG00000166813 ENST00000696512 - 15 89644813 89645022 210 GUCCGCACAGGUGAGGCGUGGGCAUCAGGUGGGCCUCUCACCCGAGGGGGACUUCUCAUCGUUACUUCUGCACUGUUCUAGAGGGAUUUCAACAAUGAGGUGGUUAGGAGCAGGGGCCGGAUGGCCUAGGUUUGAUACUCAGCCCAGCCUCUUCCAGCUGUGUGACCCUGAGCAAGUAGCAUAAACCCUCCGUGCCUCAGUUUUUUCAUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 5 71 0.003220612 0.0001043427 4.947933 GCGCGC GCGCGC
RBM14 23 478 0.012882448 0.0006941687 4.213977 CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBM8A 22 611 0.012345679 0.0008869128 3.799070 AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PPRC1 28 780 0.015566291 0.0011318283 3.781698 CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
SUPV3L1 4 199 0.002683843 0.0002898408 3.210968 CCGCCC CCGCCC
ZC3H10 13 1053 0.007514761 0.0015274610 2.298592 CAGCGC,CGAGCG,GAGCGA,GAGCGC,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
IFIH1 6 904 0.003757381 0.0013115296 1.518477 CCGCGG,GCCGCG,GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM25 1 268 0.001073537 0.0003898359 1.461434 CGGGCA AUCGGG,CGGGCA,UCGGGC
RBM42 2 407 0.001610306 0.0005912752 1.445433 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 2 452 0.001610306 0.0006564894 1.294491 UGACUG UGACUG,UGCAUG
MSI1 17 2770 0.009661836 0.0040157442 1.266630 AGGAAG,AGGAGG,AGGUGG,AGUUGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
LIN28A 26 4315 0.014492754 0.0062547643 1.212304 AGGAGA,AGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM4 18 3065 0.010198604 0.0044432593 1.198681 CCUCUU,CCUUCC,CGCGCG,CGCGGG,CUUCCU,GCGCGA,GCGCGC,GCGCGG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
RBMY1A1 2 489 0.001610306 0.0007101099 1.181221 CAAGAC ACAAGA,CAAGAC
G3BP1 86 14282 0.046698873 0.0206989801 1.173828 ACAGGC,ACCCGC,ACCGGC,ACGCAC,ACGCCC,ACGCCG,AGGCCC,AGGCCG,AUCCGC,CACACG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCC,CAUCCG,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCCACG,CCCAGG,CCCCAG,CCCCCA,CCCCCC,CCCCGC,CCCCGG,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUCC,CCGCAC,CCGCCC,CCGCCG,CCUCCG,CGGCAC,CGGCCC,CGGCCG,CUACGC,CUCCGC,UACGCC,UCCGCA,UCCGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
HNRNPA3 12 2140 0.006977992 0.0031027457 1.169267 AAGGAG,AGGAGC,CAAGGA,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
SAMD4A 23 3992 0.012882448 0.0057866714 1.154601 CGGGAA,CGGGCA,CGGGCC,CGGGUC,CUGGAA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCUGGA,GCUGGC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPM 5 999 0.003220612 0.0014492040 1.152074 GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
HNRNPH3 45 7688 0.024691358 0.0111429292 1.147878 AAGGUG,AGGGGA,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCUG,GGGGAG,GGGGGC,GGGGGG,GGUCGA,GUCGAG,UCGAGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
RBM6 5 1054 0.003220612 0.0015289102 1.074831 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPH2 53 9711 0.028985507 0.0140746688 1.042231 AAGGUG,AGGGGA,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCUG,GGGGAG,GGGGGA,GGGGGC,GGGGGG,GGUCGA,GUCGAG,UCGAGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
AGO1 2 548 0.001610306 0.0007956130 1.017196 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
KHSRP 3 35 0.18181818 0.002357873 6.268867 AGCCUC,CAGCCU,GCCUCC ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
SRSF5 1 44 0.09090909 0.002947341 4.946939 CACAGC AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF2 2 479 0.13636364 0.031438302 2.116864 AGCCUC,GCCUCC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 CACAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
IFIH1 3 146 0.009523810 0.0007406288 3.684716 GGCCCU,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AGCACC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AGGAGC,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 AGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CGGGCC,CUGGCA,CUGGCC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
YBX1 7 1321 0.019047619 0.0066606207 1.515882 CCCUGC,CCUGCG,CUGCGG,UCCAGC,UGCGGU AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
G3BP1 19 3431 0.047619048 0.0172914148 1.461483 AGGCCC,CACAGG,CACCCG,CAGGCC,CCACGC,CCAUCC,CCCAUC,CCCCAG,CCCUCC,CCGCAC,CCUAGG,CCUCCG,CCUCGG,CUCGGC,UCCGCA,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAGG,AGGUGG,UAGGAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUCUGG,GGUUAG,UCUGGC,UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AGGAGC,AGGGGC,GCCAAG,GGGGCC,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home