ENSG00000130414:-:2:239990073:240007370

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000130414:-:2:239990073:240007370 ENSG00000130414 ENST00000678188 - 2 239990074 240007370 250 UGAAAAAUGUGAGGUUUUACAAUAUUCUGCAAGGGAAGCUCAAGAUUCAAAAAAGGUGGUAGAGGACAUUGAAUACCUGAAGUUCGAUAAAGGGCCGUGGCUCAAGCAGGACAAUCGCACUUUAUACCACCUGCGAUUACUGGUUCAGGAUAAGUUUGAGGUGCUGAAUUACACAAGCAUUCCUAUCUUUCUCCCGGAAGUCACCAUUGGAGCUCAUCAGACUGACCGUGUCUUACAUCAGUUCAGAGAGUGAAAAAUGUGAGGUUUUACAAUAUUCUGCAAGGGAAGCUCAAGAUUCAA circ
ENSG00000130414:-:2:239990073:240007370 ENSG00000130414 ENST00000678188 - 2 239990074 240007370 22 AGUUCAGAGAGUGAAAAAUGUG bsj
ENSG00000130414:-:2:239990073:240007370 ENSG00000130414 ENST00000678188 - 2 240007361 240007570 210 AUGAGAACAUUCUGGCUUUUAACAUGUCCUCCUGAACCAGUCAAGCUCUAAUGCACCCUCACAUGCCCAGCACAAUGCCCAGUGCAGAGAAUGUGAGGUUUUAAAUUUGAGCAGGAGACUUUAGCGGUAUGUAUUCAUUUGUACAUUUAACUUCAGCUUGGAAAAGUUUACACUGAAUUUCAUCUUGUUUUUUCUUACAGUGAAAAAUGU ie_up
ENSG00000130414:-:2:239990073:240007370 ENSG00000130414 ENST00000678188 - 2 239989874 239990083 210 GUUCAGAGAGGUAAGACUGUGGAAAUGGAGAAAGCUGGCCAGUGGAUGAGUCUGCAGCACCUGGGGACAAUGCAGUCACUUCUCCAGAAAGGAGUUUUUGUUGUUGCUGUGUUUUGUUUGUUUUAGUGAAGGAGCCUCUUUUUCAUUGAAAUAAUUCUCCCUUUUCCCCGUAUUUCUGUGUGGAAAGCUGAUGAAGUCCUCAGAUGACAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO1 2 548 0.012 0.0007956130 3.914824 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ERI1 1 632 0.008 0.0009173461 3.124462 UUCAGA UUCAGA,UUUCAG
IGHMBP2 1 813 0.008 0.0011796520 2.761639 AAAAAA AAAAAA
PABPC4 2 1251 0.012 0.0018144033 2.725467 AAAAAA,AAAAAG AAAAAA,AAAAAG
IFIH1 1 904 0.008 0.0013115296 2.608750 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ZRANB2 6 3173 0.028 0.0045997733 2.605792 AAAGGU,AGGGAA,AGGUUU,GAGGUU,GGUGGU,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
G3BP2 2 1644 0.012 0.0023839405 2.331614 AGGAUA,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 1 1237 0.008 0.0017941145 2.156728 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM41 1 1318 0.008 0.0019115000 2.065295 UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
YBX2 1 1480 0.008 0.0021462711 1.898168 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NONO 1 1498 0.008 0.0021723567 1.880739 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM24 2 2357 0.012 0.0034172229 1.812138 AGAGUG,GAGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 1 1605 0.008 0.0023274215 1.781267 GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 1 1634 0.008 0.0023694485 1.755449 AAAAAA AAAAAA,UUUUUU
A1CF 1 1642 0.008 0.0023810421 1.748407 AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SART3 2 2634 0.012 0.0038186524 1.651899 AAAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
AGO2 1 1830 0.008 0.0026534924 1.592108 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
KHDRBS2 1 1858 0.008 0.0026940701 1.570213 GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
PUM2 1 1890 0.008 0.0027404447 1.545590 UACAUC GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBM5 6 6879 0.028 0.0099705232 1.489686 AAAAAA,AAGGUG,AGGGAA,CAAGGG,GGUGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPU 1 1965 0.008 0.0028491350 1.489476 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
CELF6 2 2997 0.012 0.0043447134 1.465701 GUGAGG,UGUGAG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ENOX1 2 3195 0.012 0.0046316558 1.373434 AGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ESRP2 1 2150 0.008 0.0031172377 1.359732 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
KHDRBS3 2 3429 0.012 0.0049707696 1.271493 AUAAAG,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SRSF3 12 16536 0.052 0.0239654858 1.117553 ACAUCA,ACCACC,ACUUUA,CAGAGA,CUUUAU,UACAAU,UACAUC,UCAGAG,UCAUCA,UCGAUA,UUCGAU,UUCUCC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
HNRNPH3 5 7688 0.024 0.0111429292 1.106906 AAGGGA,AAGGUG,AAUGUG,AGGGAA,GGGAAG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
NOVA1 2 3872 0.012 0.0056127669 1.096250 ACCACC,AGUCAC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM24 2 16 0.13636364 0.001113440 6.936292 AGAGUG,GAGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,UGAGUG,UGUGUG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AGUGAA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF2 3 479 0.18181818 0.031438302 2.531901 AGAGUG,GAGAGU,GAGUGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPA3 4 349 0.011904762 0.0017634019 2.755106 AAGGAG,AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 2 226 0.007142857 0.0011436921 2.642803 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ACO1 3 325 0.009523810 0.0016424829 2.535660 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SSB 4 505 0.011904762 0.0025493753 2.223323 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
CSTF2 8 1022 0.021428571 0.0051541717 2.055723 GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF4 4 776 0.011904762 0.0039147521 1.604546 GUGUGG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NOVA1 8 1428 0.021428571 0.0071997179 1.573523 AGCACC,AGUCAC,AUUCAU,CAGUCA,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUAUGU,GUUGUU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,AGGAGU,GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
CELF1 5 1097 0.014285714 0.0055320435 1.368689 GUUUGU,UGUGUG,UGUGUU,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAGG,GUGUGG,UGUGAG,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GAAUGU,GUUGUU,GUUUUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF3 16 3825 0.040476190 0.0192765014 1.070230 ACAUUC,ACUUCA,ACUUCU,ACUUUA,AUUCAU,CACUUC,CAGAGA,CCUCUU,CUUCAG,UCAGAG,UCAUCU,UCUCCA,UUCAUC,UUCUCC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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