ENSG00000184575:+:12:64409961:64430287

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000184575:+:12:64409961:64430287 ENSG00000184575 ENST00000332707 + 12 64409962 64430287 2050 AUGUUUAUAAAUUCUUCUGUGGGAUCAGAGGGCACGCCUAUUACAACCAGAAAACUACAAGUAUAACAGCGAGGAUGGAUGAACAGGCUCUAUUAGGGCUAAAUCCAAAUGCUGAUUCAGACUUUAGACAAAGGGCCCUGGCCUAUUUUGAGCAGUUAAAAAUUUCCCCAGAUGCCUGGCAGGUGUGUGCAGAAGCUCUAGCCCAGAGGACAUACAGUGAUGAUCAUGUGAAGUUUUUCUGCUUUCAAGUACUGGAACAUCAAGUUAAAUACAAAUACUCAGAACUAACCACUGUUCAACAACAGCUAAUUAGGGAGACGCUCAUAUCAUGGCUGCAAGCUCAGAUGCUGAAUCCCCAACCAGAGAAGACCUUUAUACGAAAUAAAGCCGCCCAAGUCUUCGCCUUGCUUUUUGUUACAGAGUAUCUCACUAAGUGGCCCAAGUUUUUUUUUGACAUUCUCUCAGUAGUGGACCUAAAUCCAAGGGGAGUAGAUCUCUACCUGCGAAUCCUCAUGGCUAUUGAUUCAGAGUUGGUGGAUCGUGAUGUGGUGCAUACAUCAGAGGAGGCUCGUAGGAAUACUCUCAUAAAAGAUACCAUGAGGGAACAGUGCAUUCCAAAUCUGGUGGAAUCAUGGUACCAAAUAUUACAAAAUUAUCAGUUUACUAAUUCUGAAGUGACGUGUCAGUGCCUUGAAGUAGUUGGGGCUUAUGUCUCUUGGAUAGACUUAUCCCUUAUAGCCAAUGAUAGGUUUAUAAAUAUGCUGCUAGGUCAUAUGUCAAUAGAAGUUCUACGGGAAGAAGCAUGUGACUGUUUAUUUGAAGUUGUAAAUAAAGGAAUGGACCCUGUUGAUAAAAUGAAACUAGUGGAAUCUUUGUGUCAAGUAUUACAGUCUGCUGGGUUUUUCAGCAUUGACCAGGAAGAAGAUGUUGACUUCCUGGCCAGAUUUUCUAAGUUGGUAAAUGGAAUGGGACAGUCAUUGAUAGUUAGUUGGAGUAAAUUAAUUAAGAAUGGGGAUAUUAAGAAUGCUCAAGAGGCACUACAAGCUAUUGAAACAAAAGUGGCACUGAUGUUGCAGCUACUAAUUCAUGAGGAUGAUGAUAUUUCUUCUAAUAUUAUUGGAUUUUGUUACGAUUAUCUUCAUAUUUUGAAACAGCUUACAGUGCUCUCGGAUCAGCAAAAAGCUAAUGUAGAGGCAAUCAUGUUGGCCGUUAUGAAAAAAUUGACUUACGAUGAAGAAUAUAACUUUGAAAAUGAGGGUGAAGAUGAAGCCAUGUUUGUAGAAUAUAGAAAACAACUGAAGUUACUGUUGGACAGGCUUGCUCAAGUUUCACCAGAGUUACUACUGGCCUCUGUUCGCAGAGUUUUUAGUUCUACACUGCAGAAUUGGCAGACUACACGGUUUAUGGAAGUUGAAGUAGCAAUAAGAUUGCUGUAUAUGUUGGCAGAAGCUCUUCCAGUAUCUCAUGGUGCUCACUUCUCAGGUGAUGUUUCAAAAGCUAGUGCUUUGCAGGAUAUGAUGCGAACUCUGGUAACAUCAGGAGUCAGUUCCUAUCAGCAUACAUCUGUGACAUUGGAGUUCUUCGAAACUGUUGUUAGAUAUGAAAAGUUUUUCACAGUUGAACCUCAGCACAUUCCAUGUGUACUAAUGGCUUUCUUAGAUCACAGAGGUCUGCGGCAUUCCAGUGCAAAAGUUCGGAGCAGGACGGCUUACCUGUUUUCUAGAUUUGUCAAAUCUCUCAAUAAGCAAAUGAAUCCUUUCAUUGAGGAUAUUUUGAAUAGAAUACAAGAUUUAUUAGAGCUUUCUCCACCUGAGAAUGGCCACCAGUCCUUACUGAGCAGCGAUGAUCAACUUUUUAUUUAUGAGACAGCUGGAGUGCUGAUUGUUAAUAGUGAAUAUCCGGCAGAAAGGAAACAAGCCUUAAUGAGGAAUCUGUUGACUCCACUAAUGGAGAAGUUUAAAAUUCUGUUAGAAAAGUUGAUGCUGGCACAAGAUGAAGAAAGGCAAGCCUCUCUAGCAGACUGUCUUAACCAUGCUGUUGGAUUUGCAAGAUGUUUAUAAAUUCUUCUGUGGGAUCAGAGGGCACGCCUAUUACAACCAG circ
ENSG00000184575:+:12:64409961:64430287 ENSG00000184575 ENST00000332707 + 12 64409962 64430287 22 GGAUUUGCAAGAUGUUUAUAAA bsj
ENSG00000184575:+:12:64409961:64430287 ENSG00000184575 ENST00000332707 + 12 64409762 64409971 210 UACACAUUAGUGGAGUAGUUAGCAGAGCCCAUUUUUCUGAGAAUUAGGCUCUAACUUUUAGUUGUAAUUUAGAUAAGUUCCAAAAUAAGUUUUUAAACAUUUAAGCUUCUUUGCAUGAUUUUAUCCAUUUACGUUAUUCAGGAUAAGCAUCUAUUUGUUUAUCAAGUAAUGUUUUCUUUCAACUUUGUUUUUUGUGGCAGAUGUUUAUAA ie_up
ENSG00000184575:+:12:64409961:64430287 ENSG00000184575 ENST00000332707 + 12 64430278 64430487 210 GAUUUGCAAGGUAAGUGUGAUCACAGUUAAAAUUAUAAAGUGCAUGUAUCUACACAGACAGAACCACUUGUUUGGUGGGCACACACAUUUGUGUUUCCACAGUUGGAUAAUCCAGAGAAUUGUCUAAAUCUUUGUCCUCCAAAUCCAGUCAGUUAGAUUUGGUUGAAGAAGGGGAUAGGUUACAUACCAUUUACAUUUUUGCCUUGACAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 3 314 0.0019512195 0.0004564992 2.095692 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SUPV3L1 1 199 0.0009756098 0.0002898408 1.751044 CCGCCC CCGCCC
RBM42 3 407 0.0019512195 0.0005912752 1.722474 AACUAA,AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
TUT1 5 678 0.0029268293 0.0009840095 1.572594 AAAUAC,AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM28 6 822 0.0034146341 0.0011926949 1.517506 AGUAGA,AGUAGU,GAGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PUM2 15 1890 0.0078048780 0.0027404447 1.509966 GUAAAU,GUAGAU,GUAUAU,UAAAUA,UACAUC,UAGAUA,UGUAAA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PTBP2 1 267 0.0009756098 0.0003883867 1.328811 CUCUCU CUCUCU
YBX2 10 1480 0.0053658537 0.0021462711 1.321975 AACAAC,AACAUC,ACAACA,ACAACU,ACAUCA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
A1CF 11 1642 0.0058536585 0.0023810421 1.297745 AGUAUA,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UCAGUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZFP36L2 8 1277 0.0043902439 0.0018520827 1.245153 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM46 31 4554 0.0156097561 0.0066011240 1.241664 AAUCAU,AAUGAA,AAUGAU,AUCAAG,AUCAUG,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,GAUCAA,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 10 1605 0.0053658537 0.0023274215 1.205075 AAUUAA,GACUUA,GAUUUA,GGCUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
QKI 18 2805 0.0092682927 0.0040664663 1.188528 AAUCAU,ACUAAC,ACUAAU,ACUUAU,CACUAA,CUAACC,CUCAUA,UACUCA,UCAUAU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RALY 9 1553 0.0048780488 0.0022520629 1.115057 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ERI1 3 632 0.0019512195 0.0009173461 1.088838 UUCAGA,UUUCAG UUCAGA,UUUCAG
ZNF638 10 1773 0.0053658537 0.0025708878 1.061541 GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBMY1A1 2 489 0.0014634146 0.0007101099 1.043224 ACAAGA ACAAGA,CAAGAC
CPEB4 4 821 0.0024390244 0.0011912456 1.033833 UUUUUU UUUUUU
DDX19B 4 821 0.0024390244 0.0011912456 1.033833 UUUUUU UUUUUU
EIF4A3 4 821 0.0024390244 0.0011912456 1.033833 UUUUUU UUUUUU

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM6 5 191 0.014285714 0.0009673519 3.884389 AAUCCA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGCAUG UGACUG,UGCAUG
RBFOX1 4 287 0.011904762 0.0014510278 3.036392 GCAUGA,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
G3BP2 4 490 0.011904762 0.0024738009 2.266737 AGGAUA,GGAUAA,GGAUAG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPLL 5 748 0.014285714 0.0037736800 1.920529 ACACAC,ACAUAC,CACACA,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBM41 3 502 0.009523810 0.0025342604 1.909974 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGUUAG,AGUUGG,UAGUUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAGUG,AAGUGC,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUUU,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAG,GACAGA,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UGAUUU,UGUUUU,UUAGUU,UUGGUU,UUGUUU,UUUAGU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AAUGUU,AAUUGU,AGAAUU,AGAUAA,GAAUUG,UAAUGU,UACAUA,UAGAUA,UGUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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