ENSG00000135624:+:2:73239642:73250438

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000135624:+:2:73239642:73250438 ENSG00000135624 MSTRG.18661.3 + 2 73239643 73250438 1201 CCCACACCAGUUAUCCUAUUGAAAGAGGGGACUGAUAGCUCCCAAGGCAUCCCCCAGCUUGUGAGUAACAUCAGUGCCUGCCAGGUGAUUGCUGAGGCUGUAAGAACUACCCUGGGUCCCCGUGGCAUGGACAAGCUUAUUGUAGAUGGCAGAGGCAAAGCAACAAUUUCUAAUGAUGGGGCCACAAUUCUGAAACUUCUUGAUGUUGUCCAUCCUGCAGCAAAGACUUUGGUAGACAUUGCCAAAUCCCAAGAUGCUGAGGUGGGUGAUGGCACCACCUCAGUGACCUUGCUGGCUGCAGAGUUUCUGAAGCAGGUGAAACCCUAUGUGGAGGAAGGUUUACACCCCCAGAUCAUCAUUCGAGCUUUCCGCACAGCCACCCAGCUGGCAGUUAACAAGAUCAAAGAGAUUGCUGUGACCGUGAAGAAGGCAGAUAAAGUGGAGCAGAGGAAGCUGCUGGAAAAGUGUGCCAUGACCGCUCUGAGCUCCAAGCUGAUCUCCCAGCAGAAAGCUUUCUUUGCUAAGAUGGUGGUGGAUGCAGUGAUGAUGCUCGAUGAUUUGCUGCAGCUUAAAAUGAUUGGAAUCAAGAAGGUACAGGGUGGAGCCCUCGAGGAUUCUCAGCUGGUAGCUGGUGUUGCAUUCAAGAAGACUUUCUCUUACGCUGGGUUUGAAAUGCAACCCAAAAAGUACCACAAUCCCAAGAUUGCCCUUUUGAAUGUCGAGCUCGAGUUGAAAGCUGAGAAAGACAAUGCUGAGAUAAGAGUCCACACAGUUGAGGUAGGAUUAUCAGGCAAUUGUUGAUGCUGAGUGGAACAUUCUCUAUGACAAGUUAGAGAAGAUCCAUCAUUCUGGAGCCAAAGUUGUCUUGUCCAAACUCCCCAUUGGGGAUGUGGCCACCCAGUACUUUGCUGACAGGGACAUGUUCUGUGCUGGCCGAGUACCUGAGGAGGAUCUGAAGAGGACAAUGAUGGCCUGUGGAGGCUCAAUCCAGACCAGUGUGAAUGCUCUGUCAGCAGAUGUGCUGGGUCGAUGCCAGGUGUUUGAAGAGACCCAGAUUGGAGGCGAGAGGUACAAUUUUUUUACUGGCUGCCCCAAGGCCAAGACAUGCACCUUCAUUCUCCGUGGCGGCGCCGAGCAGUUUAUGGAGGAGACAGAGCGGUCCCUGCAUGAUGCCAUCAUGAUCGUCAGGAGGGCCAUCAAGCCCACACCAGUUAUCCUAUUGAAAGAGGGGACUGAUAGCUCCCAAGGCAU circ
ENSG00000135624:+:2:73239642:73250438 ENSG00000135624 MSTRG.18661.3 + 2 73239643 73250438 22 GGGCCAUCAAGCCCACACCAGU bsj
ENSG00000135624:+:2:73239642:73250438 ENSG00000135624 MSTRG.18661.3 + 2 73239443 73239652 210 CAGGGUAGGCUAAAUUUGAUAGUGUCUCUGGAGGUAGAGGCUGGUUGGGGAAUGGAUGUGGUAGACAGUUGGGGGAAUGUGGUUUAAGAAGACCUCUAGAUAAUUCUGUUAAGGGAGAGAUGGGAGCAUUUUCCCCUUUCCCCUGCCAGUCUCAUUAUAAUAGAUGAUUAUUAAAAGCAGUUAAUUUCUUUCUUUUCUAGCCCACACCAG ie_up
ENSG00000135624:+:2:73239642:73250438 ENSG00000135624 MSTRG.18661.3 + 2 73250429 73250638 210 GGCCAUCAAGGUACUGGGCUGAUAUCCUCCUGCUUGCACAGCCUACUCUCUCCUAUCUCCCUAGCUGAUCAGACCUUGGAUUUGUGUGGUGAUUCCUUCUCUAUAUAACCUGCCCUUUCCUGGGUGGUGUGGUGAGCCCUGAUUUGCCCCACAAAUGGUAGAGAAACUGAGCCUCAGUUUCUCAAAAAUAGGUCAUCCUGCCUUGAAAGC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO1 5 548 0.004995837 0.0007956130 2.650588 AGGUAG,GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CNOT4 1 314 0.001665279 0.0004564992 1.867079 GACAGA GACAGA
RBMY1A1 2 489 0.002497918 0.0007101099 1.814612 ACAAGA,CAAGAC ACAAGA,CAAGAC
SRSF11 3 688 0.003330558 0.0009985015 1.737927 AAGAAG AAGAAG
SNRNP70 6 1237 0.005828476 0.0017941145 1.699847 AAUCAA,AUCAAG,AUUCAA,GAUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM42 1 407 0.001665279 0.0005912752 1.493862 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 1 411 0.001665279 0.0005970720 1.479787 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM46 20 4554 0.017485429 0.0066011240 1.405370 AAUCAA,AAUGAU,AUCAAA,AUCAAG,AUCAUG,AUCAUU,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPAB 7 1782 0.006661116 0.0025839306 1.366197 AAAGAC,AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBFOX2 1 452 0.001665279 0.0006564894 1.342920 UGCAUG UGACUG,UGCAUG
NONO 5 1498 0.004995837 0.0021723567 1.201465 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ACO1 4 1283 0.004163197 0.0018607779 1.161786 CAGUGA,CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
PPRC1 2 780 0.002497918 0.0011318283 1.142071 CGGCGC,GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
CPEB4 2 821 0.002497918 0.0011912456 1.068255 UUUUUU UUUUUU
DDX19B 2 821 0.002497918 0.0011912456 1.068255 UUUUUU UUUUUU
EIF4A3 2 821 0.002497918 0.0011912456 1.068255 UUUUUU UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPK 1 16 0.09090909 0.00111344 6.351329 GCCCAC AAAAAA,ACCCCA,ACCCCC,ACCCGA,CAAACC,CAUACC,CCAACC,CCAUAC,CCCCAC,CCCCCU,CCCCUU,GCCCAC,GCCCAG,UCCCAC
SRSF2 1 479 0.09090909 0.03143830 1.531901 GCCCAC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.04100079 1.148773 GCCCAC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CELF6 10 1196 0.026190476 0.0060308343 2.118613 GUGGUG,GUGUGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,GAUCAG,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ESRP2 5 731 0.014285714 0.0036880290 1.953651 GGGAAU,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
NELFE 7 1059 0.019047619 0.0053405885 1.834540 CUCUCU,CUCUGG,CUGGUU,GGCUAA,GUCUCU,UCUCUC,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SNRPA 12 1947 0.030952381 0.0098145909 1.657050 ACCUGC,AGCAGU,AUUCCU,CCUGCU,GAUUCC,GUAGGC,UCCUGC,UGCACA,UUCCUG,UUGCAC,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUG,GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG,AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 2 562 0.007142857 0.0028365578 1.332360 CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AGGUAC,AGGUAG,GGUGGU,GUGGUG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPH2 15 3198 0.038095238 0.0161174929 1.240983 AAGGGA,AAUGUG,AUGUGG,GAAUGU,GGAAUG,GGGAAU,GGGCUG,GGGGAA,GGGGGA,UGGGGG,UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH3 11 2496 0.028571429 0.0125806127 1.183371 AAGGGA,AAUGUG,AUGUGG,GAAUGU,GGAAUG,GGGAAU,GGGCUG,UGGGUG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACACCA,CACACC,CCACAA,CCACAC,CCCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPF 14 3360 0.035714286 0.0169336961 1.076604 AAGGGA,AAUGUG,AUGGGA,AUGUGG,GAAUGU,GAUGGG,GGAAUG,GGGAAU,GGGCUG,GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 14 3406 0.035714286 0.0171654575 1.056993 AAGGGA,AAUGUG,AUGUGG,GAAUGU,GGAAUG,GGGAAU,GGGCUG,GGGGAA,UGGGGG,UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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