ENSG00000067798:+:12:77571858:77572266

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000067798:+:12:77571858:77572266 ENSG00000067798 ENST00000550042 + 12 77571859 77572266 408 GUUUACAGGAAAUCUGUCAUUUUUUAUUAAAAUGGAAAACUGUGAAGAAAGAAAAAGAUAGCAGUUGAAGUCAAAAUUCUCGGAUGACUAUUUUGCUUUUGAGGAGUCAGCAUUUAAAAACGAUAUGCUGAUUUGGAAGGUCCUGGGAGUAAACUGCAAACUUUAUUUUUUCCAUUCAAUCAAUGGAUUUUUUAAUCAUUCCUUGGAGUCGAUGAAGUUCGGAAACGGUGUGUGAUGGGGAACGUGGCGGGCCAGUGUGUUCCUAGAAAUUGCAUCUUGGAUUAGUUUGCUGCUUUUUUGAAGAGAUUCCAUUUUGAAGGGCAAGAACCUAAUGUGAUGGAUUUAUCUUCAGAAAUGAACAGACAUGGGAAGAAUCCAGUGAGUCACAAGCUAGAAGAUCAGAAGAAGGUUUACAGGAAAUCUGUCAUUUUUUAUUAAAAUGGAAAACUGUGAAGAAA circ
ENSG00000067798:+:12:77571858:77572266 ENSG00000067798 ENST00000550042 + 12 77571859 77572266 22 AUCAGAAGAAGGUUUACAGGAA bsj
ENSG00000067798:+:12:77571858:77572266 ENSG00000067798 ENST00000550042 + 12 77571659 77571868 210 UGAGUAGUUGUGUCUUCUUUGUUACUUUUUAGCUUGGUGUUUUAAAGGCCAUAAGGGUGAAGAAUAAUGCCAUUAUUUUUAAGUCAAAUAUUGUUUAUGCCUAAAAUAUUUUGAAAUUUUCAAAUAAUAAUUUAUUUUACUAAUUGUAACAAAAAAUGGUGAAAGAGAAUUAACUAUGUGCUUAUUUUUUUAAAUCACAGGUUUACAGGA ie_up
ENSG00000067798:+:12:77571858:77572266 ENSG00000067798 ENST00000550042 + 12 77572257 77572466 210 UCAGAAGAAGGUAAAAGAAAUUUCUCUUUGCUUGGUCCUUUUUGUUUACACUUAAAGAGAAUUUUUGAAAUUGAAAAUGAAUGCACCUUUUGAGAUAAAAUAACAUACUGUUUCACGGAAAUCAACCCUGCUGUAUGGCAAUGUGUUUCUGUGGGUCUGGAUUUCAUUACCAGUUGGUAAUUUUGUUUCUAAAAUCCUCUGAAUUUAUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CPEB4 4 821 0.012254902 0.0011912456 3.362816 UUUUUU UUUUUU
DDX19B 4 821 0.012254902 0.0011912456 3.362816 UUUUUU UUUUUU
EIF4A3 4 821 0.012254902 0.0011912456 3.362816 UUUUUU UUUUUU
EIF4B 5 1179 0.014705882 0.0017100607 3.104274 CUCGGA,CUUGGA,UCGGAA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CPEB2 10 2261 0.026960784 0.0032780993 3.039931 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 9 2062 0.024509804 0.0029897078 3.035283 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
U2AF2 6 1477 0.017156863 0.0021419234 3.001807 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 6 1553 0.017156863 0.0022520629 2.929467 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
MATR3 2 739 0.007352941 0.0010724109 2.777464 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZFP36L2 4 1277 0.012254902 0.0018520827 2.726139 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ELAVL3 10 2867 0.026960784 0.0041563169 2.697485 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPC 12 3471 0.031862745 0.0050316361 2.662771 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 4 1415 0.012254902 0.0020520728 2.578205 GUGUGU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 5 1782 0.014705882 0.0025839306 2.508754 GGUGUG,GUGUGU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPN1 3 1222 0.009803922 0.0017723764 2.467674 AAAAGA,AGAAGA AAAAGA,AGAAGA
ERI1 1 632 0.004901961 0.0009173461 2.417821 UUCAGA UUCAGA,UUUCAG
ZCRB1 4 1605 0.012254902 0.0023274215 2.396554 AUUUAA,GAUUUA,GGAUUA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 4 1634 0.012254902 0.0023694485 2.370736 UUUUUU AAAAAA,UUUUUU
SRSF11 1 688 0.004901961 0.0009985015 2.295522 AAGAAG AAGAAG
RBM6 2 1054 0.007352941 0.0015289102 2.265818 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ELAVL4 13 5105 0.034313725 0.0073996354 2.213260 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS1 10 4064 0.026960784 0.0058910141 2.194275 AUUUAA,CAAAAU,GAAAAC,UAAAAA,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL1 14 5554 0.036764706 0.0080503280 2.191202 AUUUAU,UAGUUU,UAUUUU,UGAUUU,UUAGUU,UUAUUU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS2 4 1858 0.012254902 0.0026940701 2.185500 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM24 5 2357 0.014705882 0.0034172229 2.105497 AGUGUG,GUGUGA,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
HNRNPU 4 1965 0.012254902 0.0028491350 2.104763 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CSTF2 4 1967 0.012254902 0.0028520334 2.103296 GUGUGU,UGUGUG,UGUGUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
PABPC5 5 2400 0.014705882 0.0034795387 2.079425 AGAAAA,AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NOVA2 9 4013 0.024509804 0.0058171047 2.074986 AGACAU,AGAUCA,CCUAGA,GAGUCA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
PABPC3 2 1234 0.007352941 0.0017897669 2.038550 AAAAAC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 2 1237 0.007352941 0.0017941145 2.035049 AAUCAA,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
TIA1 21 9206 0.053921569 0.0133428208 2.014799 AUUUUG,AUUUUU,CUUUUG,CUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 23 10182 0.058823529 0.0147572438 1.994970 AUUUUG,AUUUUU,CUUUUG,CUUUUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ACO1 2 1283 0.007352941 0.0018607779 1.982416 CAGUGA,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF6 6 2997 0.017156863 0.0043447134 1.981453 GUGAUG,UGUGAU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ESRP2 4 2150 0.012254902 0.0031172377 1.975019 GGGAAG,GGGGAA,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM3 4 2152 0.012254902 0.0031201361 1.973678 AAAACG,AAAACU,AAACGA,GAAACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 7 3740 0.019607843 0.0054214720 1.854674 AAGAAG,AGAAGA,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CELF2 3 1886 0.009803922 0.0027346479 1.842004 GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF1 4 2391 0.012254902 0.0034664959 1.821809 GUGUGU,UGUGUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
NOVA1 7 3872 0.019607843 0.0056127669 1.804647 AGUCAC,CAUUCA,UCAUUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SNRPB2 1 991 0.004901961 0.0014376103 1.769686 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
TRA2B 13 7329 0.034313725 0.0106226650 1.691640 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AGAAGA,AGAAGG,AGGAAA,GAAAGA,GAAGAA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SART3 4 2634 0.012254902 0.0038186524 1.682223 AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TRA2A 12 6871 0.031862745 0.0099589296 1.677808 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,GAAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TARDBP 4 2654 0.012254902 0.0038476365 1.671315 GUGUGU,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
G3BP2 2 1644 0.007352941 0.0023839405 1.624973 GGAUGA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPD 4 2837 0.012254902 0.0041128408 1.575152 AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBM46 7 4554 0.019607843 0.0066011240 1.570647 AAUCAA,AAUCAU,AAUGAA,AUCAAU,AUCAUU,AUGAAG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS3 5 3429 0.014705882 0.0049707696 1.564852 AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL2 31 18468 0.078431373 0.0267653478 1.551064 AUUUAA,AUUUAU,AUUUUG,AUUUUU,CAUUUU,CUUUUU,GAUUUA,GAUUUU,UAUUUU,UCAUUU,UGAUUU,UUAGUU,UUAUUU,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC4 1 1251 0.004901961 0.0018144033 1.433864 AAAAAG AAAAAA,AAAAAG
PPIE 28 18315 0.071078431 0.0265436196 1.421047 AAAAUU,AUUAAA,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAUUAA,UAUUUU,UUAAAA,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
DAZAP1 8 5964 0.022058824 0.0086445016 1.351501 AGGAAA,AGUAAA,AGUUUG,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
FUS 4 3648 0.012254902 0.0052881452 1.212525 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
A1CF 1 1642 0.004901961 0.0023810421 1.041766 GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZCRB1 1 6 0.09090909 0.0004584752 7.631437 GGUUUA AAUUAA,AUUUAA,GACUUA,GGCUUA
RBMX 1 34 0.09090909 0.0022923762 5.309509 AGAAGG AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
ZRANB2 1 45 0.09090909 0.0030128373 4.915230 AGGUUU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
TRA2B 1 51 0.09090909 0.0034058161 4.738352 AGAAGG AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
RBM5 1 56 0.09090909 0.0037332984 4.605902 GAAGGU AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPF 1 90 0.09090909 0.0059601782 3.930997 GAAGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 GAAGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 GAAGGU AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF1 2 625 0.13636364 0.0410007860 1.733736 AGAAGG,GAAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SRSF4 4 558 0.011904762 0.0028164047 2.079612 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,ACUUAA,GAAUUA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPCL1 9 1381 0.023809524 0.0069629182 1.773775 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TRA2B 9 1447 0.023809524 0.0072954454 1.706471 AAAGAA,AAGAAG,AAGAAU,AGAAGA,AGAAGG,GAAAGA,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
TIAL1 37 5597 0.090476190 0.0282043531 1.681620 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUG,CUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 9 1487 0.023809524 0.0074969770 1.667158 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,AAUUUA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL1 21 3309 0.052380952 0.0166767432 1.651205 AUUUAU,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPC 12 2006 0.030952381 0.0101118501 1.614003 AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUU,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PPIE 57 9262 0.138095238 0.0466696896 1.565106 AAAAAA,AAAAAU,AAAAUA,AAAUAA,AAAUAU,AAAUUU,AAUAAU,AAUAUU,AAUUAA,AAUUUA,AAUUUU,AUAAAA,AUAAUA,AUAAUU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAUAA,UAAUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 AAAAAA,AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
TIA1 28 5140 0.069047619 0.0259018541 1.414536 AUUUUC,AUUUUG,AUUUUU,CUUUUG,CUUUUU,GUUUUA,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 50 9826 0.121428571 0.0495112858 1.294279 AAUUUA,AAUUUU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUU,GUUUUA,UAAUUU,UACUUU,UAUUGU,UAUUUU,UUAAGU,UUACUU,UUAUUU,UUCAUU,UUCUUU,UUUAAG,UUUACU,UUUAUG,UUUAUU,UUUCAU,UUUUAA,UUUUAG,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AGGUAA,AGGUUU,GGGUGA,GGUAAA,UAAAGG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AGAUAA,AUAAAA,GAUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUAAAA,CUAAAA,UAAAAG,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,UAUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AGAAGA,CACGGA,GAAGAA,UAAAGG AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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