circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000122566:-:7:26193250:26193694
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000122566:-:7:26193250:26193694 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193251 | 26193694 | 243 | GUGGCAAUUUUGGAGGUAGCCCCGGUUAUGGAGGAGGAAGAGGAGGAUAUGGUGGUGGAGGACCUGGAUAUGGCAACCAGGGUGGGGGCUACGGAGGUGGUUAUGACAACUAUGGAGGAGGAAAUUAUGGAAGUGGAAAUUACAAUGAUUUUGGAAAUUAUAACCAGCAACCUUCUAACUACGGUCCAAUGAAGAGUGGAAACUUUGGUGGUAGCAGGAACAUGGGGGGACCAUAUGGUGGAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAUGGAGGAGGAAGAGGAGGAUAU | circ |
| ENSG00000122566:-:7:26193250:26193694 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193251 | 26193694 | 22 | AUAUGGUGGAGGUGGCAAUUUU | bsj |
| ENSG00000122566:-:7:26193250:26193694 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193685 | 26193894 | 210 | AUGGUGUUAUCCAUUUGGCUGAGUAACCCCAGCCACCAAAUGUUUACCAAGGAUAGUUAUUCAGUCCUUGAAGCUAUUUUAGAGGAAUUUCAUUAAAUAUUUCACAUGGAAACUUGGAAAGCUGGAAAUGGAUGUGAGGAGACAGUUCAAAAUGGUAUUGAAAAUAUUAAGUGAUUACUUAAAGGCUUAUUUUAUAAUAGGUGGCAAUUU | ie_up |
| ENSG00000122566:-:7:26193250:26193694 | ENSG00000122566 | ENST00000463181 | - | 7 | 26193051 | 26193260 | 210 | UAUGGUGGAGGUAAUUUAUAAAAAUUGAGGUUAUUCAGAUUUUUGUGAUUAAAGGAUUAGCCUUUUGUGACUUAAAGGGAAGAUAACAUACUAAGUAGUUUGUACUGUGGGCAGUGCUCCAUGUACGGUCUUAGUGAAAAUAAAGAAAUUUUGCAUAAAUCUCCACAGAAGUACUCAGCAAGCAGUUAUGACAUCAAAUUGGGAUUAGGG | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM42 | 2 | 407 | 0.012345679 | 0.0005912752 | 4.384033 | AACUAC,ACUACG | AACUAA,AACUAC,ACUAAG,ACUACG |
| AGO1 | 2 | 548 | 0.012345679 | 0.0007956130 | 3.955796 | AGGUAG,GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| FXR1 | 1 | 411 | 0.008230453 | 0.0005970720 | 3.784995 | AUGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| NONO | 4 | 1498 | 0.020576132 | 0.0021723567 | 3.243639 | AGAGGA,AGGAAC,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| LIN28A | 13 | 4315 | 0.057613169 | 0.0062547643 | 3.203371 | CGGAGG,GGAGGA,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| ZRANB2 | 9 | 3173 | 0.041152263 | 0.0045997733 | 3.161337 | AGGUAG,GGUGGU,GUGGUG,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| MSI1 | 7 | 2770 | 0.032921811 | 0.0040157442 | 3.035304 | AGGAAG,AGGAGG,AGGUAG,AGGUGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| HNRNPM | 1 | 999 | 0.008230453 | 0.0014492040 | 2.505711 | GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| FUS | 6 | 3648 | 0.028806584 | 0.0052881452 | 2.445565 | GGGGGG,GGGUGG,UGGUGG | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| EIF4B | 1 | 1179 | 0.008230453 | 0.0017100607 | 2.266924 | UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| PABPC5 | 3 | 2400 | 0.016460905 | 0.0034795387 | 2.242076 | GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| SFPQ | 35 | 24050 | 0.148148148 | 0.0348548043 | 2.087611 | AAGAGG,AGAGGA,AGGAAC,AGGACC,GAAGAG,GAGGAA,GAGGAC,GAGGUA,GGAAGA,GGAGGA,GGGGAC,GGGGGA,GGGGGG,GUGGUG,GUGGUU,UGAUUU,UGGAAG,UGGAGG,UGGUGG,UUGGUG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| HNRNPH1 | 15 | 10717 | 0.065843621 | 0.0155325680 | 2.083747 | AGGAAG,GAGGAA,GGAGGA,GGGGCU,GGGGGC,GGGGGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| HNRNPH2 | 13 | 9711 | 0.057613169 | 0.0140746688 | 2.033298 | GGAGGA,GGGGCU,GGGGGA,GGGGGC,GGGGGG,UGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| SRSF9 | 28 | 20254 | 0.119341564 | 0.0293536261 | 2.023486 | AGGAAA,AGGAAC,AGGACC,AUGACA,CUGGAU,GGAACA,GGACCA,GGAGGA,GGGUGG,GGUGGA,GGUGGC,UGACAA,UGGAGG,UGGUGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| HNRNPH3 | 10 | 7688 | 0.045267490 | 0.0111429292 | 2.022347 | GGAGGA,GGGGCU,GGGGGC,GGGGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| HNRNPF | 14 | 10561 | 0.061728395 | 0.0153064921 | 2.011791 | AGGAAG,AUGGGG,GAGGAA,GGAGGA,GGGGCU,GGGGGC,GGGGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| YBX2 | 1 | 1480 | 0.008230453 | 0.0021462711 | 1.939139 | ACAACU | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| SRSF4 | 4 | 3740 | 0.020576132 | 0.0054214720 | 1.924215 | AGGAAG,GAGGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| RBM24 | 2 | 2357 | 0.012345679 | 0.0034172229 | 1.853110 | AGAGUG,GAGUGG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| G3BP2 | 1 | 1644 | 0.008230453 | 0.0023839405 | 1.787624 | AGGAUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| TRA2A | 7 | 6871 | 0.032921811 | 0.0099589296 | 1.724981 | AAGAGG,AGAGGA,AGGAAG,GAAGAG,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| HNRNPC | 3 | 3471 | 0.016460905 | 0.0050316361 | 1.709944 | GGAUAU,GGGGGG | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| RC3H1 | 1 | 1786 | 0.008230453 | 0.0025897275 | 1.668172 | CCUUCU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| RBM46 | 4 | 4554 | 0.020576132 | 0.0066011240 | 1.640188 | AAUGAA,AAUGAU,AUGAAG,AUGAUU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| HNRNPU | 1 | 1965 | 0.008230453 | 0.0028491350 | 1.530448 | GGGGGG | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| DAZAP1 | 5 | 5964 | 0.024691358 | 0.0086445016 | 1.514151 | AGGAAA,AGGAAG,AGGAUA,AGGUAG,GGGGGG | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| CELF6 | 2 | 2997 | 0.012345679 | 0.0043447134 | 1.506673 | GUGGGG,GUGGUG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| HNRNPA1 | 17 | 18070 | 0.074074074 | 0.0261885646 | 1.500032 | AAGAGG,AGAGGA,AGGAAG,GAGGAA,GAGGAG,GAGUGG,GGAGGA,GUGGUG | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| RBM3 | 1 | 2152 | 0.008230453 | 0.0031201361 | 1.399363 | GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| RBM5 | 5 | 6879 | 0.024691358 | 0.0099705232 | 1.308265 | AGGGUG,GGGGGG,GGUGGU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| FMR1 | 15 | 20291 | 0.065843621 | 0.0294072466 | 1.162872 | AGGAAG,AGGAGG,AUGGAG,CUAUGG,GAGGAU,GGGCUA,GGGGGG,UAGCAG,UAUGGA,UGACAA | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| SRSF1 | 74 | 99563 | 0.308641975 | 0.1442885423 | 1.096978 | AAGAGG,AGAGGA,AGCAGG,AGGAAA,AGGAAC,AGGAAG,AGGACC,AGGAGG,AUGAAG,AUGACA,AUGGAG,CAACCA,CCAAUG,CCAGCA,CCAGGG,CCCCGG,CCUGGA,CGGAGG,CGGUCC,GAAGAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGUA,GCAGGA,GCCCCG,GGAACA,GGAAGA,GGACCA,GGAGGA,GGAGGU,GGAUAU,GGGGAC,GGGGGA,GGGGGG,GGUCCA,GGUGGA,GGUGGC,GGUGGG,GGUGGU,UACGGA,UGAAGA,UGGAAA,UGGAGG,UGGUGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGA,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| MSI1 | 1 | 23 | 0.09090909 | 0.001571915 | 5.853829 | AGGUGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG |
| LIN28A | 1 | 35 | 0.09090909 | 0.002357873 | 5.268867 | UGGAGG | AGGAGA,AGGAGU,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG,UGGAGU |
| SRSF9 | 2 | 134 | 0.13636364 | 0.008842023 | 3.946939 | GGUGGC,UGGAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| SFPQ | 1 | 153 | 0.09090909 | 0.010086455 | 3.172005 | UGGAGG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| SRSF1 | 3 | 625 | 0.18181818 | 0.041000786 | 2.148773 | GGAGGU,GGUGGC,UGGAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.031438302 | 1.531901 | UGGAGG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| OAS1 | 1 | 35 | 0.004761905 | 0.0001813785 | 4.714464 | GCAUAA | GCAUAA |
| FXR1 | 1 | 69 | 0.004761905 | 0.0003526804 | 3.755106 | AUGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| RBM42 | 1 | 103 | 0.004761905 | 0.0005239823 | 3.183949 | ACUAAG | AACUAA,AACUAC,ACUAAG,ACUACG |
| EIF4B | 2 | 226 | 0.007142857 | 0.0011436921 | 2.642803 | CUUGGA,UUGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| G3BP2 | 5 | 490 | 0.014285714 | 0.0024738009 | 2.529772 | AGGAUA,AGGAUU,GGAUAG,GGAUUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| ZCRB1 | 7 | 666 | 0.019047619 | 0.0033605401 | 2.502846 | ACUUAA,GACUUA,GAUUAA,GGAUUA,GGCUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| HNRNPA1L2 | 1 | 188 | 0.004761905 | 0.0009522370 | 2.322146 | UUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| AGO1 | 2 | 283 | 0.007142857 | 0.0014308746 | 2.319604 | GAGGUA,UGAGGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBM6 | 1 | 191 | 0.004761905 | 0.0009673519 | 2.299426 | UAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| HNRNPA0 | 1 | 200 | 0.004761905 | 0.0010126965 | 2.233337 | AAUUUA | AAUUUA,AGAUAU,AGUAGG |
| ERI1 | 1 | 228 | 0.004761905 | 0.0011537686 | 2.045185 | UUCAGA | UUCAGA,UUUCAG |
| HNRNPA3 | 2 | 349 | 0.007142857 | 0.0017634019 | 2.018140 | CAAGGA,CCAAGG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| PABPC5 | 4 | 596 | 0.011904762 | 0.0030078597 | 1.984730 | AGAAAU,GAAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| NONO | 2 | 364 | 0.007142857 | 0.0018389762 | 1.957598 | AGAGGA,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | GUUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| YBX2 | 1 | 263 | 0.004761905 | 0.0013301088 | 1.839994 | ACAUCA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| ZRANB2 | 9 | 1360 | 0.023809524 | 0.0068571141 | 1.795865 | AGGGAA,AGGUAA,AGGUUA,CGGUCU,GAGGUU,UAAAGG,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| SNRPB2 | 1 | 288 | 0.004761905 | 0.0014560661 | 1.709463 | GUAUUG | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGC | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | AGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| SRSF5 | 8 | 1578 | 0.021428571 | 0.0079554615 | 1.429518 | AUAAAG,CACAGA,GAGGAA,GGAAGA,UAAAGG,UGCAUA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | AUACUA,GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| KHDRBS3 | 8 | 1646 | 0.021428571 | 0.0082980653 | 1.368689 | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAG,AUUAAA,UAAAUA | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| SRSF4 | 2 | 558 | 0.007142857 | 0.0028164047 | 1.342647 | GAGGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| SF1 | 5 | 1294 | 0.014285714 | 0.0065245869 | 1.130615 | ACUAAG,AGUAAC,AUACUA,CACAGA,UACUAA | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| HNRNPDL | 11 | 2689 | 0.028571429 | 0.0135530028 | 1.075961 | AAUUUA,ACUAAG,AUUAGC,AUUAGG,CUAAGU,GAUUAG,GGAUUA,UAAGUA,UUAGCC | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
| TRA2A | 4 | 1133 | 0.011904762 | 0.0057134220 | 1.059112 | AAAGAA,AAGAAA,AGAGGA,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| PPIE | 39 | 9262 | 0.095238095 | 0.0466696896 | 1.029053 | AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUU,AAUAAA,AAUAUU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAUUA,AUAUUU,AUUAAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAAUUU,UAUAAA,UAUAAU,UAUUAA,UAUUUU,UUAAAU,UUAUAA,UUAUUU,UUUAUA,UUUUAU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.