ENSG00000131747:-:17:40400208:40411455

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000131747:-:17:40400208:40411455 ENSG00000131747 ENST00000423485 - 17 40400209 40411455 2037 GGUGGCAGACAUGUUGAUUAUGUAGCUGAUCAGAUUGUGACUAAACUUGUUGAUGUUGUGAAGAAGAAGAACAAGGGUGGUGUUGCAGUAAAAGCACAUCAGGUGAAAAAUCACAUGUGGAUUUUUGUAAAUGCCUUAAUUGAAAACCCAACCUUUGACUCUCAGACAAAAGAAAACAUGACUUUACAACCCAAGAGCUUUGGAUCAACAUGCCAAUUGAGUGAAAAAUUUAUCAAAGCUGCCAUUGGCUGUGGUAUUGUAGAAAGCAUACUAAACUGGGUGAAGUUUAAGGCCCAAGUCCAGUUAAACAAGAAGUGUUCAGCUGUAAAACAUAAUAGAAUCAAGGGAAUUCCCAAACUCGAUGAUGCCAAUGAUGCAGGGGGCCGAAACUCCACUGAGUGUACGCUUAUCCUGACUGAGGGAGAUUCAGCCAAAACUUUGGCUGUUUCAGGCCUUGGUGUGGUUGGGAGAGACAAAUAUGGGGUUUUCCCUCUUAGAGGAAAAAUACUCAAUGUUCGAGAAGCUUCUCAUAAGCAGAUCAUGGAAAAUGCUGAGAUUAACAAUAUCAUCAAGAUUGUGGGUCUUCAGUACAAGAAAAACUAUGAAGAUGAAGAUUCAUUGAAGACGCUUCGUUAUGGGAAGAUAAUGAUUAUGACAGAUCAGGACCAAGAUGGUUCCCACAUCAAAGGCUUGCUGAUUAAUUUUAUCCAUCACAACUGGCCCUCUCUUCUGCGACAUCGUUUUCUGGAGGAAUUUAUCACUCCCAUUGUAAAGGUAUCUAAAAACAAGCAAGAAAUGGCAUUUUACAGCCUUCCUGAAUUUGAAGAGUGGAAGAGUUCUACUCCAAAUCAUAAAAAAUGGAAAGUCAAAUAUUACAAAGGUUUGGGCACCAGCACAUCAAAGGAAGCUAAAGAAUACUUUGCAGAUAUGAAAAGACAUCGUAUCCAGUUCAAAUAUUCUGGUCCUGAAGAUGAUGCUGCUAUCAGCCUGGCCUUUAGCAAAAAACAGAUAGAUGAUCGAAAGGAAUGGUUAACUAAUUUCAUGGAGGAUAGAAGACAACGAAAGUUACUUGGGCUUCCUGAGGAUUACUUGUAUGGACAAACUACCACAUAUCUGACAUAUAAUGACUUCAUCAACAAGGAACUUAUCUUGUUCUCAAAUUCUGAUAACGAGAGAUCUAUCCCUUCUAUGGUGGAUGGUUUGAAACCAGGUCAGAGAAAGGUUUUGUUUACUUGCUUCAAACGGAAUGACAAGCGAGAAGUAAAGGUUGCCCAAUUAGCUGGAUCAGUGGCUGAAAUGUCUUCUUAUCAUCAUGGUGAGAUGUCACUAAUGAUGACCAUUAUCAAUUUGGCUCAGAAUUUUGUGGGUAGCAAUAAUCUAAACCUCUUGCAGCCCAUUGGUCAGUUUGGUACCAGGCUACAUGGUGGCAAGGAUUCUGCUAGUCCACGAUACAUCUUUACAAUGCUCAGCUCUUUGGCUCGAUUGUUAUUUCCACCAAAAGAUGAUCACACGUUGAAGUUUUUAUAUGAUGACAACCAGCGUGUUGAGCCUGAAUGGUACAUUCCUAUUAUUCCCAUGGUGCUGAUAAAUGGUGCUGAAGGAAUCGGUACUGGGUGGUCCUGCAAAAUCCCCAACUUUGAUGUGCGUGAAAUUGUAAAUAACAUCAGGCGUUUGAUGGAUGGAGAAGAACCUUUGCCAAUGCUUCCAAGUUACAAGAACUUCAAGGGUACUAUUGAAGAACUGGCUCCAAAUCAAUAUGUGAUUAGUGGUGAAGUAGCUAUUCUUAAUUCUACAACCAUUGAAAUCUCAGAGCUUCCCGUCAGAACAUGGACCCAGACAUACAAAGAACAAGUUCUAGAACCCAUGUUGAAUGGCACCGAGAAGACACCUCCUCUCAUAACAGACUAUAGGGAAUACCAUACAGAUACCACUGUGAAAUUUGUUGUGAAGAUGACUGAAGAAAAACUGGCAGAGGCAGAGAGAGUUGGACUACACAAAGUCUUCAAACUCCAAACUAGUCUCACAUGCAACUCUAUGGGUGGCAGACAUGUUGAUUAUGUAGCUGAUCAGAUUGUGACUAAACUUGU circ
ENSG00000131747:-:17:40400208:40411455 ENSG00000131747 ENST00000423485 - 17 40400209 40411455 22 GCAACUCUAUGGGUGGCAGACA bsj
ENSG00000131747:-:17:40400208:40411455 ENSG00000131747 ENST00000423485 - 17 40411446 40411655 210 CUACAUCCAAGGUAAUUUUAUUCUUAAAUUAUUAAUCAUGAUUUAUCUUUACAUAUAUGUGUUCUUAUUGUUUUUAAUAUAUAAAGUGGACUUGAAUAUUGGGCUAGCUUAGUAUAAAGGAGGUUAAAUUAGUUUUUAAUGUUUGAUUAUUAUAAUUUUGAGGAUACUGAGUUUUACAGUUUGGUAUUUUUCCUUAUUAGGGUGGCAGAC ie_up
ENSG00000131747:-:17:40400208:40411455 ENSG00000131747 ENST00000423485 - 17 40400009 40400218 210 CAACUCUAUGGUAUGUAUUUGUUUUGUGAGAUGUACACGUUUCAAUUUAUAUUAAAGAUUAAUAUCAAUUUUAAAAGUAUAUCUUAGUCUACCUUUAUAAAGUUUAGCCAAUUUGUCUAUUCUUGGCUCUAAUCUUGUUUUCCUUUUUCAGGUGCUUUUUGACCACGUAGGCUGUUUAAAGAAAUAUGACACGGUGUUGGAUAUUCUAAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC3 11 1234 0.005891016 0.0017897669 1.718745 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
FXR1 3 411 0.001963672 0.0005970720 1.717577 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA1L2 2 314 0.001472754 0.0004564992 1.689832 AUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM41 11 1318 0.005891016 0.0019115000 1.623811 AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TUT1 5 678 0.002945508 0.0009840095 1.581772 AAAUAC,AAUACU,AGAUAC,CGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA0 3 453 0.001963672 0.0006579386 1.577529 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
HNRNPAB 14 1782 0.007363770 0.0025839306 1.510877 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBMY1A1 3 489 0.001963672 0.0007101099 1.467440 ACAAGA ACAAGA,CAAGAC
PTBP2 1 267 0.000981836 0.0003883867 1.337988 CUCUCU CUCUCU
YBX2 10 1480 0.005400098 0.0021462711 1.331153 AACAUC,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPN1 8 1222 0.004418262 0.0017723764 1.317794 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM42 2 407 0.001472754 0.0005912752 1.316615 AACUAA,AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
A1CF 11 1642 0.005891016 0.0023810421 1.306923 AUCAGU,GAUCAG,UAAUUG,UCAGUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM46 32 4554 0.016200295 0.0066011240 1.295236 AAUCAA,AAUCAU,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUGAAA,AUGAAG,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBFOX2 2 452 0.001472754 0.0006564894 1.165673 UGACUG UGACUG,UGCAUG
ZRANB2 20 3173 0.010309278 0.0045997733 1.164309 AAAGGU,AGGGAA,AGGUAU,AGGUUU,GGGUGA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
SNRNP70 7 1237 0.003927344 0.0017941145 1.130282 AAUCAA,AUCAAG,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SART3 16 2634 0.008345606 0.0038186524 1.127953 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CNOT4 1 314 0.000981836 0.0004564992 1.104870 GACAGA GACAGA
SNRPB2 5 991 0.002945508 0.0014376103 1.034844 GUAUUG,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM3 12 2152 0.006381934 0.0031201361 1.032385 AAAACU,AAACUA,AAGACG,AAUACU,AGACUA,AUACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPM 5 999 0.002945508 0.0014492040 1.023256 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FUS 1 11 0.09090909 0.0007859576 6.853829 GGGUGG AAAAAA,CGGUGG,GGGUGA,GGGUGG,GGGUGU
HNRNPH3 1 61 0.09090909 0.0040607807 4.484596 UGGGUG AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 1 80 0.09090909 0.0053052135 4.098942 UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
FMR1 1 117 0.09090909 0.0077285827 3.556149 CUAUGG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF9 1 134 0.09090909 0.0088420225 3.361976 GGGUGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
MATR3 3 216 0.009523810 0.0010933091 3.122837 AAUCUU,AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
AKAP1 3 221 0.009523810 0.0011185006 3.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGU,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AAUAUA,AUAUAU,CAUAUA,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SSB 5 505 0.014285714 0.0025493753 2.486358 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AAGGAG,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PUM2 5 764 0.014285714 0.0038542926 1.890035 GUAUAU,UACAUA,UACAUC,UAUAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUUG,GUUUUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAGUG,GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PPIE 66 9262 0.159523810 0.0466696896 1.773214 AAAUAU,AAAUUA,AAUAUA,AAUAUU,AAUUAU,AAUUUA,AAUUUU,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAUU,UAAUAU,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAUAA,UUAUAU,UUAUUA,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AGUAUA,AUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AAUGUU,GUAUAU,UAAUAU,UAAUGU,UACAUA,UACAUC,UAUAUA,UGUACA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TIAL1 34 5597 0.083333333 0.0282043531 1.562976 AAUUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CAGUUU,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 GAUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
QKI 4 904 0.011904762 0.0045596534 1.384543 AAUCAU,CUAAUC,UAAUCA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,GGAUAC,GGAUAU,UUUUUA,UUUUUC,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 AUUUAU,UAGUUU,UAUUUU,UGAUUU,UGUUUU,UUAGUU,UUGAUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL2 50 9826 0.121428571 0.0495112858 1.294279 AAUUUA,AAUUUG,AAUUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUG,AUUUUU,CUUUUU,GAUUUA,GUUUUA,GUUUUC,GUUUUU,UAAUUU,UAUAUA,UAUAUU,UAUUAU,UAUUGU,UAUUUG,UAUUUU,UCUUAU,UGAUUU,UGUAUU,UUAGUU,UUAUAU,UUAUUG,UUGAUU,UUUAAU,UUUAUA,UUUAUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 AUUUAU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUU,GUGUUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRSF5 7 1578 0.019047619 0.0079554615 1.259593 AUAAAG,CACGUA,UAAAGG,UACAUA,UACAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUCC,UUUUUC UUUUCC,UUUUUC,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AUCAAU,AUCAUG,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,GUAUGU,UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home