ENSG00000254536:+:10:133398434:133402773

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000254536:+:10:133398434:133402773 ENSG00000254536 ENST00000468317 + 10 133398435 133402773 470 AAAAUUAUGCAACACUUAGAAGGAGAAGGCCUAAAAAAUGUCAUUUUUACCAACUGUGUAAAGGAUGAAAAUGUCAAGCAGAUCAUCCCGAUGGUCACUGAACUGAUUGGGAGAAGCCACCGCUACCACCGAAAAGAGAACCUGGAGUACUGUAUCAUGGUCAUUGGGGUCCCCAACGUGGGCAAGUCCUCCCUCAUCAACUCCCUCCGGAGGCAGCACCUCAGGAAAGGGAAAGCCACCAGGGUGGGUGGCGAGCCUGGGAUCACCAGAGCUGUGAUGUCCAAAAUUCAGGUCUCUGAGCGGCCCCUGAUGUUCCUGUUGGACACUCCUGGCGUGCUGGCUCCUCGGAUUGAAAGUGUGGAGACAGGCCUGAAGCUGGCCCUGUGUGGAACGGUGCUGGACCACCUGGUCGGGGAGGAGACCAUGGCUGACUACCUGCUGUACACCCUCAACAAACACCAGCGCUUUGGAAAAUUAUGCAACACUUAGAAGGAGAAGGCCUAAAAAAUGUCAUUUUUAC circ
ENSG00000254536:+:10:133398434:133402773 ENSG00000254536 ENST00000468317 + 10 133398435 133402773 22 CAGCGCUUUGGAAAAUUAUGCA bsj
ENSG00000254536:+:10:133398434:133402773 ENSG00000254536 ENST00000468317 + 10 133398235 133398444 210 CCAGUGAAUUCAAAAAUUAUCUGGGCGUGGUGGCGCAUGCCUGUAAUCCCUGCUACUUGGGAGGCUGAGGCAUGAGAAUCGCUUGAACCAGGGAGGCGGAGGUUGCAGGGAGCCGAGAUUGUGCUACUGCACUCCAGCCUGGGUGACAGAGCCAAGACUCCAGUAAAAAAAGUAACAUAGAAAUGUUUUGUGUCUUUCAGAAAAUUAUGC ie_up
ENSG00000254536:+:10:133398434:133402773 ENSG00000254536 ENST00000468317 + 10 133402764 133402973 210 AGCGCUUUGGGUGAGUGCAGUGAAUGCAGGGCAGCUGGGGCCCCUCCUCCUAGUCACCUCAUUUAAAAAAAAAAAACAAACAAAAAAACCCCCAGCAUUAUAAAGGUAUUAUAAACACGGUAACCUGCACAUCGUUUAAAGCGUCCAGUUGGACAAGUUCGGGAGUAUGGCUAUACGUCUGUGAAAGCAACACACAAUCAAGAAAACGAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 286 0.004255319 0.0004159215 3.354884 AACCUG AACCUG
EIF4B 4 1179 0.010638298 0.0017100607 2.637148 CUCGGA,GUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
NOVA2 11 4013 0.025531915 0.0058171047 2.133929 AACACC,ACCACC,AGAUCA,AGCACC,AUCAAC,AUCACC,AUCAUC,GAGACA,GAGGCA,GAUCAC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ZC3H10 2 1053 0.006382979 0.0015274610 2.063094 CAGCGC,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
CELF5 3 1415 0.008510638 0.0020520728 2.052185 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
IGHMBP2 1 813 0.004255319 0.0011796520 1.850906 AAAAAA AAAAAA
G3BP2 3 1644 0.008510638 0.0023839405 1.835919 AGGAUG,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
IGF2BP1 1 831 0.004255319 0.0012057377 1.819351 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
LIN28A 9 4315 0.021276596 0.0062547643 1.766240 AGGAGA,CGGAGG,GGAGAA,GGAGGA,GGAGUA,UGGAGA,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
CELF4 3 1782 0.008510638 0.0025839306 1.719700 GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
IFIH1 1 904 0.004255319 0.0013115296 1.698017 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM24 4 2357 0.010638298 0.0034172229 1.638371 AGUGUG,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
NOVA1 7 3872 0.017021277 0.0056127669 1.600555 AACACC,ACCACC,AGCACC,AUCAAC,AUCACC,AUCAUC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
CELF6 5 2997 0.012765957 0.0043447134 1.554969 GUGAUG,GUGUGG,UGUGAU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPM 1 999 0.004255319 0.0014492040 1.554007 GAAGGA AAGGAA,GAAGGA,GGGGGG
SAMD4A 6 3992 0.014893617 0.0057866714 1.363889 CUGGAC,CUGGCC,CUGGUC,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
PABPC5 3 2400 0.008510638 0.0034795387 1.290371 GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NELFE 4 3028 0.010638298 0.0043896388 1.277093 CUGGCU,GGUCUC,GUCUCU,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
AGO2 2 1830 0.006382979 0.0026534924 1.266337 AAAAAA,AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 1 1222 0.004255319 0.0017723764 1.263582 AAAAGA AAAAGA,AGAAGA
PABPC4 1 1251 0.004255319 0.0018144033 1.229772 AAAAAA AAAAAA,AAAAAG
PUM2 2 1890 0.006382979 0.0027404447 1.219820 UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SSB 1 1260 0.004255319 0.0018274462 1.219438 UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZRANB2 4 3173 0.010638298 0.0045997733 1.209633 AGGGAA,AGGUCU,GUAAAG,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
IGF2BP3 6 4815 0.014893617 0.0069793662 1.093526 AAACAC,AAAUUC,AAUUCA,ACAAAC,ACACUC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPLL 4 3534 0.010638298 0.0051229360 1.054225 ACAAAC,ACACCA,CAAACA,CACCGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ESRP2 2 2150 0.006382979 0.0031172377 1.033962 GGGAAA,GGGGAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
EIF4B 1 5 0.09090909 0.0003929788 7.853829 UUGGAA CUUGGA,UCGGAA,UUGGAA,UUGGAC
PABPC5 1 18 0.09090909 0.0012444328 6.190864 GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SRSF9 1 134 0.09090909 0.0088420225 3.361976 GGAAAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 1 625 0.09090909 0.0410007860 1.148773 UGGAAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
IGHMBP2 11 350 0.028571429 0.0017684401 4.014024 AAAAAA AAAAAA
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
PABPC4 12 462 0.030952381 0.0023327287 3.729960 AAAAAA,AAAAAG AAAAAA,AAAAAG
SART3 16 777 0.040476190 0.0039197904 3.368225 AAAAAA,AAAAAC,AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
PABPC3 5 310 0.014285714 0.0015669085 3.188580 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
AGO2 11 677 0.028571429 0.0034159613 3.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SNRNP70 3 253 0.009523810 0.0012797259 2.895704 AAUCAA,AUCAAG,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC1 18 1321 0.045238095 0.0066606207 2.763810 AAAAAA,AAAAAC,ACAAAC,AGAAAA,CAAACA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
SYNCRIP 11 1041 0.028571429 0.0052498992 2.444212 AAAAAA AAAAAA,UUUUUU
HNRNPU 11 1136 0.028571429 0.0057285369 2.318335 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGA,GCAUGC AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
IGF2BP3 12 1348 0.030952381 0.0067966546 2.187154 AAAAAC,AAAACA,AAACAC,AACACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,CAAACA,CAAUCA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
FUS 14 1711 0.035714286 0.0086255542 2.049812 AAAAAA,GGGUGA,UGGUGG AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPD 11 1488 0.028571429 0.0075020153 1.929223 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPLL 5 748 0.014285714 0.0037736800 1.920529 ACAAAC,ACACAC,ACUGCA,CAAACA,CACACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
IGF2BP2 16 2163 0.040476190 0.0109028617 1.892367 AAAAAC,AAAACA,AAACAC,AACACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,CAAACA,CAACAC,CAAUCA,CACACA,GAAAAC,GAAUUC,GCACUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACG,AAACGA,AAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ZRANB2 9 1360 0.023809524 0.0068571141 1.795865 AAAGGU,AGGUAU,CGGUAA,GAGGUU,GGGUGA,GUGGUG,UAAAGG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPL 9 1419 0.023809524 0.0071543732 1.734641 AAACAA,AAACAC,AACAAA,AACACA,ACACAA,ACACAC,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
FXR2 4 730 0.011904762 0.0036829907 1.692589 GACAAG,GACAGA,GGACAA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM5 14 2359 0.035714286 0.0118903668 1.586708 AAAAAA,AAGGUA,AGGGAG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GUGAAU,GUUUUG,UGAAUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
YTHDC1 6 1254 0.016666667 0.0063230552 1.398272 GAAUGC,GAGUGC,GCAUGC,UACUGC,UGCUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AAAAAA,AGGUUG,AGUAAA,AGUAUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
FMR1 25 5430 0.061904762 0.0273629585 1.177826 AAAAAA,AGCUGG,AGGGAG,CAGCUG,CUGAGG,CUGGGC,GACAAG,GCAGCU,GCUGAG,GCUGGG,GGACAA,GGCUAU,GGCUGA,UGACAG AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
HNRNPK 14 3244 0.035714286 0.0163492543 1.127276 AAAAAA,ACCCCC,CCCCCA,GCCCCU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
ZFP36 42 9408 0.102380952 0.0474052801 1.110828 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGU,AAACAA,AAAGCA,AAAGUA,AACAAA,AAGAAA,AAGCAA,AAGUAA,ACAAAC,ACAAGU,ACCUGC,AGUAAA,AUAAAC,AUAAAG,AUUUAA,CAAACA,CCCUCC,CCCUGC,UAAACA,UCCUCC,UCUUUC,UUGUGC,UUUAAA AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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