ENSG00000141556:+:17:82797756:82884202

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000141556:+:17:82797756:82884202 ENSG00000141556 ENST00000681983 + 17 82797757 82884202 762 GCACAAAUAUUUAAACAUGGAAAACGUGAAGACUGUUUGCCCUAUGCUGCCACUGUCCUCAGGUGCCUCGAUGGCUGCAGACUCCCUGAGAGCAACCAGACCCUGCUGCGGAAGCUGGGGGUGAAGCUUGUGCAGCGACUGGGGCUGACAUUCCUGAAGCCGAAGGUGGCAGCAUGGAGGUACCAGCGUGGCUGCCGAUCUUUGGCUGCAAAUCUGCAGCUCCUCACUCAGGGUCAGAGUGAGCAGAAGCCACUCAUCCUGACCGAAGAUGACGACGAAGAUGACGACGUCCCAGAGGGGGUGGAGCGUGUGAUAGAGCAGCUGCUGGUCGGGCUGAAGGACAAGGACACGGUCGUGCGGUGGUCUGCAGCCAAGGGCAUCGGUAGGAUGGCUGGCAGGCUUCCCAGAGCCCUGGCGGAUGAUGUGGUCGGGUCUGUGCUGGACUGCUUCAGUUUCCAGGAGACUGACAAGGCGUGGCAUGGGGGAUGUCUGGCGCUGGCAGAGCUGGGCAGGAGAGGCCUGUUGCUGCCGUCUCGACUCGUGGAUGUUGUCGCCGUGAUCCUGAAGGCGCUGACCUACGACGAGAAGCGGGGUGCCUGCAGCGUGGGCACCAACGUCAGGGACGCCGCCUGCUACGUGUGCUGGGCCUUCGCGCGUGCCUAUGAGCCUCAGGAGCUGAAGCCCUUUGUGACUGCAAUCUCGAGUGCACUGGUGAUUGCUGCGGUGUUUGACCGAGACAUAAACUGCAGAAGAGCAGCCUCUGCACAAAUAUUUAAACAUGGAAAACGUGAAGACUGUUUGCCCUAUGCUGC circ
ENSG00000141556:+:17:82797756:82884202 ENSG00000141556 ENST00000681983 + 17 82797757 82884202 22 GAGCAGCCUCUGCACAAAUAUU bsj
ENSG00000141556:+:17:82797756:82884202 ENSG00000141556 ENST00000681983 + 17 82797557 82797766 210 AGAUGAAUUUUUGGGAGAUGAUUUCACUAGUCUCUUAUAAUUACUUUAUCAUGUACAGAAACUGUUUUCUUUAUUAUUAGGUGGUGAGUGUUUAGAAUAAAAAUUCUGAAAGAUGUGAUGAAUUGUUUUCACAAUUUGUGUGUAUGUUUUAAACUUCUAUUUGUAUUUGUAACAUUAAAAAUCUUUUUUUUUUUUUUUAGGCACAAAUAU ie_up
ENSG00000141556:+:17:82797756:82884202 ENSG00000141556 ENST00000681983 + 17 82884193 82884402 210 AGCAGCCUCUGUAAGUUUUCUCAUUUUGAUAUUUCCUUUCCUGAAGGUGGGGGGUGGGCCUGGUCUCCCUGAUGCUCCUCUGUGCACUGCUGCCUGGCCAGCUCACCCAUCCACAGCAGGAGCCGCGAGGGAGCUGCUGAGAGUGCCAGCUGCGGGCAGGCCACUGGUUCUUACUGUCUCUGGGCGUCUUCAGCGUGUGAAGGGCGGUCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 5 411 0.007874016 0.0005970720 3.721123 ACGACG,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBM25 1 268 0.002624672 0.0003898359 2.751198 UCGGGC AUCGGG,CGGGCA,UCGGGC
ANKHD1 1 339 0.002624672 0.0004927293 2.413270 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ZC3H10 5 1053 0.007874016 0.0015274610 2.365964 CAGCGA,CCAGCG,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBFOX2 1 452 0.002624672 0.0006564894 1.999293 UGACUG UGACUG,UGCAUG
RBM14 1 478 0.002624672 0.0006941687 1.918779 CGCGCG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
AGO1 1 548 0.002624672 0.0007956130 1.721998 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SRP14 2 847 0.003937008 0.0012289250 1.679703 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM8A 1 611 0.002624672 0.0008869128 1.565273 CGCGCG ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
YTHDC1 16 5576 0.022309711 0.0080822104 1.464850 GACUGC,GAGUGC,GCCUGC,GCGUGC,GGCUGC,GGGUGC,UCGUGC,UGCUAC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RBFOX1 2 1077 0.003937008 0.0015622419 1.333482 AGCAUG,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
FXR2 8 3434 0.011811024 0.0049780156 1.246491 GACAAG,GACGAA,GACGAG,GGACAA,UGACAA,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
PPRC1 1 780 0.002624672 0.0011318283 1.213482 CGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
SAMD4A 9 3992 0.013123360 0.0057866714 1.181331 CGGGUC,CUGGAC,CUGGCA,CUGGUC,GCUGGA,GCUGGC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
SF1 11 4931 0.015748031 0.0071474739 1.139666 ACUGAC,CGCUGA,GCUGAC,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
G3BP2 3 1644 0.005249344 0.0023839405 1.138789 AGGAUG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPA3 4 2140 0.006561680 0.0031027457 1.080520 AGGAGC,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
MBNL1 30 13372 0.040682415 0.0193802045 1.069822 CCUGCU,CUGCCA,CUGCCG,CUGCGG,CUGCUA,CUGCUG,CUGCUU,CUUGUG,GCGCUG,GCUGCG,GCUGCU,GCUUGU,GUCUCG,GUGCUG,UGCUGC,UGCUUC,UUGCCC,UUGCUG,UUGUGC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
IFIH1 1 904 0.002624672 0.0013115296 1.000887 GCGGAU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPA 1 39 0.09090909 0.002619859 5.116864 UGCACA AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,GAGCAG,GAUACC,GCAGUA,GGAGAU,GGGUAU,GUAGGC,GUAGUG,UAUGCU,UCCUGC,UGCACG,UUCCUG,UUGCAC
SRSF6 1 68 0.09090909 0.004519256 4.330267 CCUCUG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 53 0.004761905 0.0002720677 4.129501 CGGGCA AUCGGG,CGGGCA,UCGGGC
CPEB4 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.0034864974 2.909192 UUUUUU UUUUUU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GCCGCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
KHDRBS2 12 1051 0.030952381 0.0053002821 2.545909 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RALY 11 1117 0.028571429 0.0056328094 2.342647 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 10 1041 0.026190476 0.0052498992 2.318681 UUUUUU AAAAAA,UUUUUU
HNRNPU 11 1136 0.028571429 0.0057285369 2.318335 GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBM6 1 191 0.004761905 0.0009673519 2.299426 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
U2AF2 10 1071 0.026190476 0.0054010480 2.277731 UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 13 1381 0.033333333 0.0069629182 2.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SSB 4 505 0.011904762 0.0025493753 2.223323 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
KHDRBS3 14 1646 0.035714286 0.0082980653 2.105654 AAUAAA,AUAAAA,AUUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NOVA1 11 1428 0.028571429 0.0071997179 1.988561 GGGGGG,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 11 1434 0.028571429 0.0072299476 1.982516 GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
FUS 13 1711 0.033333333 0.0086255542 1.950277 GGGGGG,GGGUGG,UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 AUUUUU,CUUUUU,GGGGGG,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM24 6 888 0.016666667 0.0044790407 1.895704 AGAGUG,GAGUGU,GUGUGA,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
KHDRBS1 14 1945 0.035714286 0.0098045143 1.864983 AUAAAA,UAAAAA,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AUCAUG,AUGAAU,AUGAUU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUGU,GUGUUU,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF2 5 881 0.014285714 0.0044437727 1.684716 GUAUGU,GUGUGU,UAUGUU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
NELFE 6 1059 0.016666667 0.0053405885 1.641895 CUCUGG,CUGGUU,GGUCUC,GUCUCU,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CGGGCA,CUGGCC,CUGGUC,GCGGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ELAVL3 11 1928 0.028571429 0.0097188634 1.555714 UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGU,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL4 15 2916 0.038095238 0.0146966949 1.374119 UUGUAU,UUUAUU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 UGAUUU,UGUUUU,UUGUUU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TIA1 25 5140 0.061904762 0.0259018541 1.256995 AUUUUG,AUUUUU,CCUUUC,CUUUUU,GUUUUA,GUUUUC,UCCUUU,UUUAUU,UUUUCU,UUUUGG,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAUG,GUGGGG,GUGGUG,UGUGAU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUCU,GUUCUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ELAVL2 44 9826 0.107142857 0.0495112858 1.113706 AAUUUG,AAUUUU,AUAUUU,AUUAUU,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUUU,GUUUUA,GUUUUC,UAAGUU,UACUUU,UAUGUU,UAUUAU,UAUUUG,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUACUU,UUCUUU,UUGUAU,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 CUGUCU,GUGUGU,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AAUUUU,AGUUUU,AUUUUG,AUUUUU,CUUUUU,GUUUUC,UUUAAA,UUUAUU,UUUUAA,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PCBP2 17 4164 0.042857143 0.0209844821 1.030213 AAAUUC,AAUUAC,ACAUUA,AUUAAA,CAUUAA,CUCCCU,GGGGGG,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPK 13 3244 0.033333333 0.0163492543 1.027741 ACCCAU,CCAUCC,GGGGGG,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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