ENSG00000107643:+:10:48401611:48410168

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000107643:+:10:48401611:48410168 ENSG00000107643 MSTRG.3948.2 + 10 48401612 48410168 499 CUUCUUGGUGAAUUUUUGGAUGAAGCCAUUAAAUUAAUUGCUUGCCAUCAUGAGCAGAAGCAAGCGUGACAACAAUUUUUAUAGUGUAGAGAUUGGAGAUUCUACAUUCACAGUCCUGAAACGAUAUCAGAAUUUAAAACCUAUAGGCUCAGGAGCUCAAGGAAUAGUAUGCGCAGCUUAUGAUGCCAUUCUUGAAAGAAAUGUUGCAAUCAAGAAGCUAAGCCGACCAUUUCAGAAUCAGACUCAUGCCAAGCGGGCCUACAGAGAGCUAGUUCUUAUGAAAUGUGUUAAUCACAAAAAUAUAAUUGGCCUUUUGAAUGUUUUCACACCACAGAAAUCCCUAGAAGAAUUUCAAGAUGUUUACAUAGUCAUGGAGCUCAUGGAUGCAAAUCUUUGCCAAGUGAUUCAGAUGGAGCUAGAUCAUGAAAGAAUGUCCUACCUUCUCUAUCAGAUGCUGUGUGGAAUCAAGCACCUUCAUUCUGCUGGAAUUAUUCAUCGGCUUCUUGGUGAAUUUUUGGAUGAAGCCAUUAAAUUAAUUGCUUGCCAUCA circ
ENSG00000107643:+:10:48401611:48410168 ENSG00000107643 MSTRG.3948.2 + 10 48401612 48410168 22 UUAUUCAUCGGCUUCUUGGUGA bsj
ENSG00000107643:+:10:48401611:48410168 ENSG00000107643 MSTRG.3948.2 + 10 48401412 48401621 210 UUAAAAAAAACUAUCAGUCAUUCAUAUGGCAUAUGCUAAUCAAGGCUCUGCGGUAUUUUUUUUCUUAUGUUUUUUAAUGAAGCAGCUCUUUUCAUGAUCUAGCAGUCUGUGUUACUAUCAGUACGUAAACAGUAAGGACUCAAAUUUUAAGAUUAAAACAAGUUCAUUUUGUUAACAUCAUGUUUUGUUGCAUCUUGCAGCUUCUUGGUG ie_up
ENSG00000107643:+:10:48401611:48410168 ENSG00000107643 MSTRG.3948.2 + 10 48410159 48410368 210 UAUUCAUCGGGUUAGUAGAAGAAACUAUCGUCAUACUCUUUGUUUUCUCAUUGAGGUGAAAUUCAUGUAACAAAAUUAACCAUUCUAAAGUGGCAUUUUUAGUACAUUCACAGUGCUGUACAACUACCACCCAUAUUAAAUUCUAAAAUAUUUUCAUUACCCCCAAAAAAGUCUCCAUGUUUCUUAAGCAGUUGUGCAUCUUUGCCCUGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 3 632 0.008016032 0.0009173461 3.127350 UUCAGA,UUUCAG UUCAGA,UUUCAG
SNRNP70 5 1237 0.012024048 0.0017941145 2.744579 AAUCAA,AUCAAG,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPA0 1 453 0.004008016 0.0006579386 2.606863 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM28 2 822 0.006012024 0.0011926949 2.333626 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGF2BP1 2 831 0.006012024 0.0012057377 2.317935 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBM8A 1 611 0.004008016 0.0008869128 2.176024 AUGCGC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
A1CF 4 1642 0.010020040 0.0023810421 2.073223 AUAAUU,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SRSF11 1 688 0.004008016 0.0009985015 2.005052 AAGAAG AAGAAG
RBM46 12 4554 0.026052104 0.0066011240 1.980616 AAUCAA,AUCAAG,AUCAUG,AUGAAA,AUGAAG,AUGAUG,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF5 3 1415 0.008016032 0.0020520728 1.965806 GUGUGG,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MATR3 1 739 0.004008016 0.0010724109 1.902030 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZCRB1 3 1605 0.008016032 0.0023274215 1.784156 AAUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 1260 0.006012024 0.0018274462 1.718022 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMS3 2 1283 0.006012024 0.0018607779 1.691945 AAUAUA,CUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPA3 4 2140 0.010020040 0.0031027457 1.691271 AGGAGC,CAAGGA,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM41 2 1318 0.006012024 0.0019115000 1.653146 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 5 2654 0.012024048 0.0038476365 1.643878 GAAUGU,GUGAAU,UGAAUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF4 3 1782 0.008016032 0.0025839306 1.633321 GUGUGG,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 3 1967 0.008016032 0.0028520334 1.490897 UGUGUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPM 1 999 0.004008016 0.0014492040 1.467628 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPCL1 3 2062 0.008016032 0.0029897078 1.422884 AUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 3 2261 0.008016032 0.0032780993 1.290029 AUUUUU,CCUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA2 6 4013 0.014028056 0.0058171047 1.269942 AGAUCA,AGCACC,AGUCAU,CCUAGA,CUAGAU,UAGAUC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
TRA2B 11 7329 0.024048096 0.0106226650 1.178777 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AGAAGA,GAAAGA,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPN1 1 1222 0.004008016 0.0017723764 1.177203 AGAAGA AAAAGA,AGAAGA
RBM4 4 3065 0.010020040 0.0044432593 1.173198 CCUUCU,CUUCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPA2B1 13 8607 0.028056112 0.0124747476 1.169304 AAGAAG,AAGGAA,AAUUUA,AGAAGC,AGGAGC,AUUUAA,CAAGAA,CAAGGA,GAAGCC,GCCAAG,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
PABPC3 1 1234 0.004008016 0.0017897669 1.163117 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
CELF2 2 1886 0.006012024 0.0027346479 1.136496 AUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PUM2 2 1890 0.006012024 0.0027404447 1.133441 UACAUA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PPIE 28 18315 0.058116232 0.0265436196 1.130576 AAAAAU,AAAAUA,AAAUAU,AAAUUA,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAUU,AUAUAA,AUUAAA,AUUAAU,AUUAUU,AUUUAA,AUUUUU,UAAAUU,UAUAAU,UUAAAA,UUAAAU,UUAAUU,UUUAAA,UUUAUA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
TIAL1 15 10182 0.032064128 0.0147572438 1.119537 AAUUUU,AUUUUU,CUUUUG,GUUUUC,UAAAUU,UUAAAU,UUUAAA,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA1 5 3872 0.012024048 0.0056127669 1.099139 AGCACC,AUUCAU,CAUUCA,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PUM1 8 5823 0.018036072 0.0084401638 1.095542 AAUGUU,AGAAUU,CAGAAU,UACAUA,UGUAGA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
KHSRP 2 35 0.13636364 0.002357873 5.853829 CGGCUU,GGCUUC ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
G3BP1 1 69 0.09090909 0.004584752 4.309509 AUCGGC ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 53 0.004761905 0.0002720677 4.129501 AUCGGG AUCGGG,CGGGCA,UCGGGC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
MATR3 3 216 0.009523810 0.0010933091 3.122837 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 3 263 0.009523810 0.0013301088 2.839994 AACAUC,ACAACU,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
IGHMBP2 4 350 0.011904762 0.0017684401 2.750989 AAAAAA AAAAAA
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
AGO2 7 677 0.019047619 0.0034159613 2.479247 AAAAAA,AAAGUG,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
NOVA1 15 1428 0.038095238 0.0071997179 2.403598 ACCACC,AUUCAU,CAGUCA,CAUUCA,UCAGUC,UCAUUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
SSB 4 505 0.011904762 0.0025493753 2.223323 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAAACU,AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SYNCRIP 8 1041 0.021428571 0.0052498992 2.029174 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA,AAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUCAGU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGF2BP3 8 1348 0.021428571 0.0067966546 1.656639 AAAAAC,AAAACA,AAAUUC,AAUUCA,ACAUUC,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 CAAAAU,CUAAAA,UAAAAA,UAAAAC,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
QKI 4 904 0.011904762 0.0045596534 1.384543 AUUAAC,CUAAUC,UAAUCA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAA,AAUGAA,AUCAAG,AUCAUG,AUGAAG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,AAAAAC,CUAAUC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
YBX1 6 1321 0.016666667 0.0066606207 1.323237 AACAUC,ACAUCA,ACCACC,CAUCAU,CUGCGG,UGCGGU AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
FUS 8 1711 0.021428571 0.0086255542 1.312847 AAAAAA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPC 9 2006 0.023809524 0.0101118501 1.235492 AUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 ACCACC,AGUCAU,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AUUAAA,UAAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
TIAL1 25 5597 0.061904762 0.0282043531 1.134133 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUC,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUUUAA,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SF1 5 1294 0.014285714 0.0065245869 1.130615 AGUAAG,AUUAAC,CAGUCA,UAACAA,UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
IGF2BP2 9 2163 0.023809524 0.0109028617 1.126832 AAAAAC,AAAACA,AAAUUC,AAUUCA,ACAUUC,CAUUCA,CCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CUCUUU,CUUCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 UAUUUU,UGUUUU,UUGUUU,UUUAGU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AAAAAA,UAUUUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AGAAGA,GAAGAA,UACGUA,UGCAGC,UGCAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
PCBP1 20 4891 0.050000000 0.0246473196 1.020497 AAAAAA,AAAUUA,AAAUUC,AAUUAA,AAUUCA,AUUAAA,AUUACC,AUUCAC,CCACCC,CCAUUC,CCCCAA,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUC,AUUUUG,AUUUUU,CUUUUC,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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