circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000164587:-:5:150446801:150446963
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164587:-:5:150446801:150446963 | ENSG00000164587 | ENST00000407193 | - | 5 | 150446802 | 150446963 | 162 | GGAAACCAUCUGCCGUGUGACUGGUGGGAUGAAGGUAAAGGCAGACCGAGAUGAAUCCUCACCAUAUGCUGCUAUGUUGGCUGCCCAGGAUGUGGCCCAGAGGUGCAAGGAGCUGGGUAUCACCGCCCUACACAUCAAACUCCGGGCCACAGGAGGAAAUAGGGAAACCAUCUGCCGUGUGACUGGUGGGAUGAAGGUAAAGGCAGACCGAG | circ |
| ENSG00000164587:-:5:150446801:150446963 | ENSG00000164587 | ENST00000407193 | - | 5 | 150446802 | 150446963 | 22 | GGAGGAAAUAGGGAAACCAUCU | bsj |
| ENSG00000164587:-:5:150446801:150446963 | ENSG00000164587 | ENST00000407193 | - | 5 | 150446954 | 150447163 | 210 | GCAAAAGUAGAUAUAUAAAAUGUUAAUACUGAGUAUAGCUAUAUUGGGCCAUUCAACCCCACUGGACUGAACUCCAUGAGGGCAGAGCCCAUGACCAUCAUCCUCCACCAUGACUGAGCUGUGUUGCUCUUCACUCAUUAGGAUAUCGUAAGCACUCCUUGUUGGACGAGGAAGAAAUGACCCUGUGCUUUUGUCCCCAGGGAAACCAUC | ie_up |
| ENSG00000164587:-:5:150446801:150446963 | ENSG00000164587 | ENST00000407193 | - | 5 | 150446602 | 150446811 | 210 | GAGGAAAUAGGUACGAGUCGCAGAGGGGAUGGCUGGGUGGUAGAAAACCUGCUGGGCUUGGGUGCUGGAGCACCUGGAUUUGAGGUUUGGGUUUUUUGUUGUGACCUUGAACAAGAUAUUUUAGGCAUAUACAUACUUAAUAAUUGGCUCCUGUGUACACCCCCCAGCAGCUCAGUGUUGAGCACCCACUGUAUACUAGGAGCUGUGUUU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SUPV3L1 | 1 | 199 | 0.01234568 | 0.0002898408 | 5.412602 | CCGCCC | CCGCCC |
| HNRNPA1L2 | 2 | 314 | 0.01851852 | 0.0004564992 | 5.342212 | AUAGGG,UAGGGA | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| RBFOX2 | 1 | 452 | 0.01234568 | 0.0006564894 | 4.233091 | UGACUG | UGACUG,UGCAUG |
| ZRANB2 | 6 | 3173 | 0.04320988 | 0.0045997733 | 3.231726 | AGGGAA,AGGUAA,GGUAAA,GUAAAG,UAAAGG,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| HNRNPA3 | 3 | 2140 | 0.02469136 | 0.0031027457 | 2.992389 | AAGGAG,AGGAGC,CAAGGA | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| RBFOX1 | 1 | 1077 | 0.01234568 | 0.0015622419 | 2.982316 | UGACUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| G3BP2 | 2 | 1644 | 0.01851852 | 0.0023839405 | 2.957549 | AGGAUG,GGAUGA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| YBX2 | 1 | 1480 | 0.01234568 | 0.0021462711 | 2.524102 | ACAUCA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| NONO | 1 | 1498 | 0.01234568 | 0.0021723567 | 2.506673 | GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| RBM46 | 5 | 4554 | 0.03703704 | 0.0066011240 | 2.488185 | AUCAAA,AUGAAG,AUGAAU,GAUGAA | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| ZNF638 | 1 | 1773 | 0.01234568 | 0.0025708878 | 2.263668 | UGUUGG | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| CELF2 | 1 | 1886 | 0.01234568 | 0.0027346479 | 2.174579 | UAUGUU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| RBM5 | 6 | 6879 | 0.04320988 | 0.0099705232 | 2.115620 | AAGGAG,AAGGUA,AGGGAA,AGGUAA,CAAGGA,GAAGGU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| ESRP2 | 1 | 2150 | 0.01234568 | 0.0031172377 | 1.985666 | GGGAAA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| RBM24 | 1 | 2357 | 0.01234568 | 0.0034172229 | 1.853110 | GUGUGA | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| MSI1 | 1 | 2770 | 0.01234568 | 0.0040157442 | 1.620267 | AGGAGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| HNRNPA2B1 | 5 | 8607 | 0.03703704 | 0.0124747476 | 1.569958 | AAGGAG,AGGAGC,AUAGGG,CAAGGA,UAGGGA | AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA |
| SNRPA | 4 | 7380 | 0.03086420 | 0.0106965744 | 1.528785 | AUGCUG,CUGCUA,GGGUAU,UAUGCU | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| DAZAP1 | 3 | 5964 | 0.02469136 | 0.0086445016 | 1.514151 | AGGAAA,AGGAUG,AGGUAA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| HNRNPF | 6 | 10561 | 0.04320988 | 0.0153064921 | 1.497217 | AGGGAA,AUGUGG,GAAGGU,GAGGAA,GGAGGA,GGGAUG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| SF1 | 2 | 4931 | 0.01851852 | 0.0071474739 | 1.373463 | GCUGCC,UGCUGC | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| HNRNPLL | 1 | 3534 | 0.01234568 | 0.0051229360 | 1.268963 | CACCGC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| HNRNPH1 | 5 | 10717 | 0.03703704 | 0.0155325680 | 1.253672 | AGGGAA,AUGUGG,GAAGGU,GAGGAA,GGAGGA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| FUS | 1 | 3648 | 0.01234568 | 0.0052881452 | 1.223172 | UGGUGG | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| FMR1 | 10 | 20291 | 0.06790123 | 0.0294072466 | 1.207266 | AAGGAG,ACUGGU,AGCUGG,AGGAGG,AGGAUG,CUGGUG,GACUGG,GCUAUG,GCUGGG,UGGCUG | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| YTHDC1 | 2 | 5576 | 0.01851852 | 0.0080822104 | 1.196147 | GGCUGC,UGCUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| SRSF4 | 1 | 3740 | 0.01234568 | 0.0054214720 | 1.187250 | GAGGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| HNRNPH3 | 3 | 7688 | 0.02469136 | 0.0111429292 | 1.147878 | AGGGAA,AUGUGG,GGAGGA | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| NOVA1 | 1 | 3872 | 0.01234568 | 0.0056127669 | 1.137222 | AUCACC | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| SAMD4A | 1 | 3992 | 0.01234568 | 0.0057866714 | 1.093201 | CGGGCC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| NOVA2 | 1 | 4013 | 0.01234568 | 0.0058171047 | 1.085633 | AUCACC | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| HNRNPA1 | 8 | 18070 | 0.05555556 | 0.0261885646 | 1.084994 | AAGGAG,AGGAGC,AUAGGG,CAAGGA,GAAGGU,GAGGAA,GGAGGA,UAGGGA | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| G3BP1 | 6 | 14282 | 0.04320988 | 0.0206989801 | 1.061801 | AGGCAG,CACAGG,CCACAG,CCCAGG,CCCUAC,CCGCCC | ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPA1L2 | 2 | 3 | 0.13636364 | 0.0002619859 | 9.023754 | AUAGGG,UAGGGA | AUAGGG,UUAGGG |
| ESRP2 | 1 | 14 | 0.09090909 | 0.0009824469 | 6.531901 | GGGAAA | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA |
| HNRNPA2B1 | 2 | 49 | 0.13636364 | 0.0032748232 | 5.379898 | AUAGGG,UAGGGA | AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG |
| ZRANB2 | 1 | 45 | 0.09090909 | 0.0030128373 | 4.915230 | AGGGAA | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA |
| RBM5 | 1 | 56 | 0.09090909 | 0.0037332984 | 4.605902 | AGGGAA | AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU |
| HNRNPH3 | 1 | 61 | 0.09090909 | 0.0040607807 | 4.484596 | AGGGAA | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| HNRNPA1 | 2 | 119 | 0.13636364 | 0.0078595756 | 4.116864 | AUAGGG,UAGGGA | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.0053052135 | 4.098942 | AGGGAA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPF | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | AGGGAA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.0059601782 | 3.930997 | AGGGAA | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| NXF1 | 1 | 43 | 0.004761905 | 0.0002216848 | 4.424957 | AACCUG | AACCUG |
| IGF2BP1 | 4 | 173 | 0.011904762 | 0.0008766626 | 3.763373 | AAGCAC,AGCACC,GCACCC | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| RBMY1A1 | 1 | 95 | 0.004761905 | 0.0004836759 | 3.299426 | ACAAGA | ACAAGA,CAAGAC |
| RBMS1 | 3 | 217 | 0.009523810 | 0.0010983474 | 3.116204 | AUAUAC,GAUAUA,UAUAUA | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| RBFOX2 | 1 | 124 | 0.004761905 | 0.0006297864 | 2.918604 | UGACUG | UGACUG,UGCAUG |
| HNRNPA0 | 2 | 200 | 0.007142857 | 0.0010126965 | 2.818299 | AGAUAU | AAUUUA,AGAUAU,AGUAGG |
| AKAP1 | 2 | 221 | 0.007142857 | 0.0011185006 | 2.674935 | AUAUAU,UAUAUA | AUAUAU,UAUAUA |
| EIF4B | 2 | 226 | 0.007142857 | 0.0011436921 | 2.642803 | GUUGGA,UUGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| SRSF4 | 5 | 558 | 0.014285714 | 0.0028164047 | 2.342647 | AGGAAG,GAAGAA,GAGGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| RBMS3 | 5 | 562 | 0.014285714 | 0.0028365578 | 2.332360 | AUAUAU,CAUAUA,CUAUAU,UAUAGC,UAUAUA | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| PABPC3 | 2 | 310 | 0.007142857 | 0.0015669085 | 2.188580 | AAAACC,GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| PUM2 | 6 | 764 | 0.016666667 | 0.0038542926 | 2.112428 | GUAGAU,UACAUA,UAGAUA,UAUAUA,UGUACA,UGUAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| CELF5 | 5 | 669 | 0.014285714 | 0.0033756550 | 2.081334 | GUGUUG,GUGUUU,UGUGUU | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| TUT1 | 1 | 230 | 0.004761905 | 0.0011638452 | 2.032640 | AAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| NONO | 2 | 364 | 0.007142857 | 0.0018389762 | 1.957598 | GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | AUUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| CELF4 | 5 | 776 | 0.014285714 | 0.0039147521 | 1.867580 | GUGUUG,GUGUUU,UGUGUU | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | UGAGGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBFOX1 | 1 | 287 | 0.004761905 | 0.0014510278 | 1.714464 | UGACUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| A1CF | 3 | 598 | 0.009523810 | 0.0030179363 | 1.657976 | AGUAUA,AUAAUU,UAAUUG | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| CELF1 | 6 | 1097 | 0.016666667 | 0.0055320435 | 1.591081 | GUGUUG,GUUGUG,UGUGUU,UGUUGU | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGU | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| G3BP2 | 2 | 490 | 0.007142857 | 0.0024738009 | 1.529772 | AGGAUA,GGAUGG | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| RBM41 | 2 | 502 | 0.007142857 | 0.0025342604 | 1.494937 | AUACAU,AUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| RBM28 | 1 | 340 | 0.004761905 | 0.0017180572 | 1.470761 | AGUAGA | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| CSTF2 | 5 | 1022 | 0.014285714 | 0.0051541717 | 1.470761 | GUGUUG,GUGUUU,UGUGUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | AGGAGC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | AAUACU,AUACUA | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| TRA2A | 5 | 1133 | 0.014285714 | 0.0057134220 | 1.322146 | AAGAAA,AGGAAG,GAAGAA,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SRSF5 | 7 | 1578 | 0.019047619 | 0.0079554615 | 1.259593 | AGGAAG,CGCAGA,GAAGAA,GAGGAA,GGAAGA,UACAUA | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| PABPC5 | 2 | 596 | 0.007142857 | 0.0030078597 | 1.247764 | AGAAAA,AGAAAU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| NOVA1 | 6 | 1428 | 0.016666667 | 0.0071997179 | 1.210953 | AGCACC,AUCAUC,CAUUCA,CCCCCC,UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| ZNF638 | 2 | 646 | 0.007142857 | 0.0032597743 | 1.131729 | UGUUGG,UGUUGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| ZRANB2 | 5 | 1360 | 0.014285714 | 0.0068571141 | 1.058900 | AGGGAA,AGGUAC,AGGUUU,GAGGUU,GGUGGU | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.