ENSG00000102024:+:X:115629834:115643508

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000102024:+:X:115629834:115643508 ENSG00000102024 ENST00000481823 + X 115629835 115643508 816 AGGAAGAAAAAUAUGCUUUUGUUAACUGGAUAAACAAAGCUUUGGAAAAUGAUCCUGAUUGUAGACAUGUUAUACCAAUGAACCCUAACACCGAUGACCUGUUCAAAGCUGUUGGUGAUGGAAUUGUGCUUUGUAAAAUGAUUAACCUUUCAGUUCCUGAUACCAUUGAUGAAAGAGCAAUCAACAAGAAGAAACUUACACCCUUCAUCAUUCAGGAAAACUUGAACUUGGCACUGAACUCUGCUUCUGCCAUUGGGUGUCAUGUUGUGAACAUUGGUGCAGAAGAUUUGAGGGCUGGGAAACCUCAUCUGGUUUUGGGACUGCUUUGGCAGAUCAUUAAGAUCGGUUUGUUCGCUGACAUUGAAUUAAGCAGGAAUGAAGCCUUGGCUGCUUUACUCCGAGAUGGUGAGACUUUGGAGGAACUUAUGAAAUUGUCUCCAGAAGAGCUUCUGCUUAGAUGGGCAAACUUUCAUUUGGAAAACUCGGGCUGGCAAAAAAUUAACAACUUUAGUGCUGACAUCAAGGAUUCCAAAGCCUAUUUCCAUCUUCUCAAUCAAAUCGCACCAAAAGGACAAAAGGAAGGUGAACCACGGAUAGAUAUUAACAUGUCAGGUUUCAAUGAAACAGAUGAUUUGAAGAGAGCUGAGAGUAUGCUUCAACAAGCAGAUAAAUUAGGUUGCAGACAGUUUGUUACCCCUGCUGAUGUUGUCAGUGGAAACCCCAAACUCAACUUAGCUUUCGUGGCUAACCUGUUUAAUAAAUACCCAGCACUAACUAAGCCAGAGAACCAGGAUAUUGACUGGACUCUAUUAGAAGAGGAAGAAAAAUAUGCUUUUGUUAACUGGAUAAACAAAGCUUUGGAAAAU circ
ENSG00000102024:+:X:115629834:115643508 ENSG00000102024 ENST00000481823 + X 115629835 115643508 22 UCUAUUAGAAGAGGAAGAAAAA bsj
ENSG00000102024:+:X:115629834:115643508 ENSG00000102024 ENST00000481823 + X 115629635 115629844 210 GUGUUCUAUUCUUUUUCUUAAUUUUGUAAUUCCUAAUAACCACUGUGUUGCAUCCAAGUGUCUGGGUUUCCACACAGAAUAACCACAUGUUUCUGACACAUUAACUUUCAGCACUACUGCACAACUAUUUUAGGCUUUGGAGUCAAAUAUUUAAUAAGUUAGAGUAUGAACUAAUGUCUUGUUAUUUAACAUAAUUUUAGAGGAAGAAAA ie_up
ENSG00000102024:+:X:115629834:115643508 ENSG00000102024 ENST00000481823 + X 115643499 115643708 210 CUAUUAGAAGGUAACUAAAAACCUCAAUUUCGAAUGUGUGGGACUAUAGAGUAGAAAUACAUAGGCCACAAUGAUUUUACAAUCUAGACUUAAUAAGUUUUUUUAUAUCUACAAGAAGUAGAUGGCAGAUGCUGAGUAAAAACUGGCAGGAAAGUACGAUACAAGUGAACUUUUAAAGUAAAGUAGUCGAGGCCGGGCACGGUGGCUCAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 268 0.002450980 0.0003898359 2.652420 UCGGGC AUCGGG,CGGGCA,UCGGGC
RBM42 2 407 0.003676471 0.0005912752 2.636420 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
NXF1 1 286 0.002450980 0.0004159215 2.558976 AACCUG AACCUG
RBM46 20 4554 0.025735294 0.0066011240 1.962965 AAUCAA,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAUU,AUGAAA,AUGAAG,AUGAUU,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBFOX2 1 452 0.002450980 0.0006564894 1.900515 UGACUG UGACUG,UGCAUG
HNRNPA0 1 453 0.002450980 0.0006579386 1.897334 AGAUAU AAUUUA,AGAUAU,AGUAGG
PABPN1 4 1222 0.006127451 0.0017723764 1.789602 AGAAGA AAAAGA,AGAAGA
RBMY1A1 1 489 0.002450980 0.0007101099 1.787245 ACAAGA ACAAGA,CAAGAC
SNRNP70 4 1237 0.006127451 0.0017941145 1.772015 AAUCAA,AUCAAG,GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
QKI 10 2805 0.013480392 0.0040664663 1.729015 ACUAAC,ACUUAU,AUUAAC,CACUAA,CUAACA,CUAACC,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZCRB1 5 1605 0.007352941 0.0023274215 1.659589 AAUUAA,GAAUUA,GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF4 12 3740 0.015931373 0.0054214720 1.555114 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SF1 16 4931 0.020833333 0.0071474739 1.543388 ACUAAC,ACUAAG,ACUUAU,AUUAAC,CACCGA,CACUGA,CGCUGA,CUAACA,GCUAAC,GCUGAC,UAACAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ZNF638 5 1773 0.007352941 0.0025708878 1.516055 GUUGGU,UGUUCG,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
NONO 4 1498 0.006127451 0.0021723567 1.496026 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
KHDRBS2 5 1858 0.007352941 0.0026940701 1.448534 AAUAAA,AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ERI1 1 632 0.002450980 0.0009173461 1.417821 UUUCAG UUCAGA,UUUCAG
G3BP2 4 1644 0.006127451 0.0023839405 1.361939 AGGAUA,AGGAUU,GGAUAA,GGAUAG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TUT1 1 678 0.002450980 0.0009840095 1.316615 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
TRA2A 19 6871 0.024509804 0.0099589296 1.299296 AAGAAA,AAGAAG,AAGAGG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF11 1 688 0.002450980 0.0009985015 1.295522 AAGAAG AAGAAG
MATR3 1 739 0.002450980 0.0010724109 1.192501 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 3 1480 0.004901961 0.0021462711 1.191527 AACAAC,ACAACU,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PUM2 4 1890 0.006127451 0.0027404447 1.160877 UAAAUA,UAGAUA,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SRSF7 36 14481 0.045343137 0.0209873716 1.111363 AAAGGA,AAGAAG,AAGGAC,AAUGAU,AGAAGA,AGAGAA,AGAGAG,AGAGGA,AGAUCA,AGGAAG,AGGACA,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAGAU,CUGAGA,GAAGAA,GAAUGA,GACAAA,GAGACU,GAGGAA,GAUAGA,GGAAGG,GGACAA,UCAACA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
EIF4B 2 1179 0.003676471 0.0017100607 1.104274 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF1 5 2391 0.007352941 0.0034664959 1.084843 GUUGUG,GUUUGU,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
IGHMBP2 1 813 0.002450980 0.0011796520 1.054998 AAAAAA AAAAAA
RBM28 1 822 0.002450980 0.0011926949 1.039134 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC3 2 1234 0.003676471 0.0017897669 1.038550 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SSB 2 1260 0.003676471 0.0018274462 1.008493 CUGUUU,GCUGUU CUGUUU,GCUGUU,UGCUGU,UGUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 2 11 0.13636364 0.0007859576 7.438792 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGGAA
PABPN1 1 9 0.09090909 0.0006549646 7.116864 AGAAGA AAAAGA,AGAAGA
SRSF4 2 18 0.13636364 0.0012444328 6.775827 AGAAGA,GAGGAA AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2A 5 54 0.27272727 0.0036023055 6.242395 AAGAGG,AGAAGA,AGAGGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF5 2 44 0.13636364 0.0029473408 5.531901 AGAAGA,GAGGAA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF6 2 68 0.13636364 0.0045192560 4.915230 AGAAGA,GAGGAA AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
TRA2B 1 51 0.09090909 0.0034058161 4.738352 AGAAGA AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
HNRNPA1 3 119 0.18181818 0.0078595756 4.531901 AAGAGG,AGAGGA,GAGGAA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SFPQ 4 153 0.22727273 0.0100864553 4.493933 AAGAGG,AGAGGA,GAAGAG,GAGGAA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF7 3 128 0.18181818 0.0084490438 4.427565 AGAAGA,AGAGGA,GAGGAA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF10 3 160 0.18181818 0.0105449306 4.107875 AAGAGG,AGAGGA,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPF 1 90 0.09090909 0.0059601782 3.930997 GAGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.0059601782 3.930997 GAGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SRSF1 5 625 0.27272727 0.0410007860 2.733736 AAGAGG,AGAAGA,AGAGGA,GAAGAG,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG
SRSF2 3 479 0.18181818 0.0314383023 2.531901 AGAAGA,AGAGGA,GAGGAA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 53 0.004761905 0.0002720677 4.129501 CGGGCA AUCGGG,CGGGCA,UCGGGC
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM28 4 340 0.011904762 0.0017180572 2.792689 AGUAGA,AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,CGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
SRSF4 5 558 0.014285714 0.0028164047 2.342647 AAGAAG,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
NONO 2 364 0.007142857 0.0018389762 1.957598 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 ACUUAA,AUUUAA,GACUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGG,GUGUUG,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 CUAUAG,UAUAGA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GUGUGG,GUGUUG,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAGAAA,AAGAAG,AGAGGA,AGGAAG,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF5 8 1578 0.021428571 0.0079554615 1.429518 AAGAAG,AGGAAG,CACAGA,GAAGAA,GAGGAA,GGAAGA,UACAUA,UGCAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAGAAG,AAUAAG,AGAAGG,AGGAAA,AGGAAG,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACCACA,ACUGCA,CACACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAC,ACUAAU,AGAAAA,CAAAUA,CUAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
IGF2BP3 6 1348 0.016666667 0.0067966546 1.294069 AAAAAC,AAAUAC,AAUACA,ACAAUC,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAC,AGAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGUGG,GUGUUG,UGUGGG,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAC,AAUACA,ACAUAA,ACCACA,CACAAC,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUUUAA,CUAAAA,UAAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AAGAAG,AAGUAA,AAGUGU,AGAAGG,AGGAAG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUUG,UGUCUG,UGUGUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 AACCAC,ACCACA,CCACAA,CCACAC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AACUAA,ACAUUA,ACUGCA,GAACUA,GAGUAG,GCACUA,GGACUA,UCUGAC,UUAGGC,UUUAGG AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
AGO2 2 677 0.007142857 0.0034159613 1.064210 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUAAU,AUCUAC,AUUAAC AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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