ENSG00000063046:+:12:53016472:53022627

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000063046:+:12:53016472:53022627 ENSG00000063046 MSTRG.7336.2 + 12 53016473 53022627 654 CAAAAAAGAAGAAUAAGAAGGGGAAGACUAUCUCCCUAACAGACUUUCUGGCUGAGGAUGGGGGUACUGGUGGAGGAAGCACCUAUGUUUCCAAACCAGUCAGCUGGGCUGAUGAAACGGAUGACCUGGAAGGAGAUGUUUCGACCACUUGGCACAGUAACGAUGACGAUGUGUAUAGGGCGCCUCCAAUUGACCGUUCCAUCCUUCCCACUGCUCCACGGGCUGCUCGGGAACCCAAUAUCGACCGGAGCCGUCUUCCCAAAUCGCCACCCUACACUGCUUUUCUAGGAAACCUACCCUAUGAUGUUACAGAAGAGUCAAUUAAGGAAUUCUUUCGAGGAUUAAAUAUCAGUGCAGUGCGUUUACCACGUGAACCCAGCAAUCCAGAGAGGUUGAAAGGUUUUGGUUAUGCUGAAUUUGAGGACCUGGAUUCCCUGCUCAGUGCCCUGAGUCUCAAUGAAGAGUCUCUAGGUAACAGGAGAAUUCGAGUGGACGUUGCUGAUCAAGCACAGGAUAAAGACAGGGAUGAUCGUUCUUUUGGCCGUGAUAGAAAUCGGGAUUCUGACAAAACAGAUACAGACUGGAGGGCUCGUCCUGCUACAGACAGCUUUGAUGACUACCCACCUAGAAGAGGUGAUGAUAGCUUUGGAGACACAAAAAAGAAGAAUAAGAAGGGGAAGACUAUCUCCCUAACAGACUUUCUG circ
ENSG00000063046:+:12:53016472:53022627 ENSG00000063046 MSTRG.7336.2 + 12 53016473 53022627 22 CUUUGGAGACACAAAAAAGAAG bsj
ENSG00000063046:+:12:53016472:53022627 ENSG00000063046 MSTRG.7336.2 + 12 53016273 53016482 210 UUACACAUAAUAGGUAUUCUGCAACUUUUAAAUUUCUUAUUUAUGUCUGCAUAGUACCCCUUCAUGGAAAUGCCAUAAUUUAACCAUUUGAGGAGCGUCCAUGUUAUUUCUUUCUAAAUAAUGUUUUACAAUAUUGCAUUGUACAACUCUGUAAAUACCUGAGUAUUGGUGAAUAAUCUUUCUCUUGCCUUUUAAAACAGCAAAAAAGAA ie_up
ENSG00000063046:+:12:53016472:53022627 ENSG00000063046 MSTRG.7336.2 + 12 53022618 53022827 210 UUUGGAGACAGUAAGUUUGUUUUUAUGAAGUUAGCUUCCUCUGUGCUUUGGGAGGCUAUUUAGUAAUAGGACAAAUGUGUUACAGAUGAUCAGAUCACAUUAACAGAUAGAAGGAGGAAAGCAGAUUAAGAAAAAUUUUGGAUAGUAUCUGAAAGAACUGAUAGAUGCAGGAAACGAAUUUGAUAAAUUAAUAAUUUUUUUUGAAAACUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.003058104 0.0002275250 3.748540 AGGGAU AGGGAU
ANKHD1 2 339 0.004587156 0.0004927293 3.218733 GACGAU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM25 1 268 0.003058104 0.0003898359 2.971699 AUCGGG AUCGGG,CGGGCA,UCGGGC
HNRNPA1L2 1 314 0.003058104 0.0004564992 2.743953 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
G3BP2 8 1644 0.013761468 0.0023839405 2.529214 AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUGA,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
FXR1 1 411 0.003058104 0.0005970720 2.356661 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 3 831 0.006116208 0.0012057377 2.342721 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SRSF11 2 688 0.004587156 0.0009985015 2.199763 AAGAAG AAGAAG
PABPN1 4 1222 0.007645260 0.0017723764 2.108881 AAAAGA,AGAAGA AAAAGA,AGAAGA
PPRC1 2 780 0.004587156 0.0011318283 2.018945 GGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
ACO1 3 1283 0.006116208 0.0018607779 1.716732 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPM 2 999 0.004587156 0.0014492040 1.662339 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TUT1 1 678 0.003058104 0.0009840095 1.635893 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM6 2 1054 0.004587156 0.0015289102 1.585096 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SRSF4 9 3740 0.015290520 0.0054214720 1.495881 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ZCRB1 3 1605 0.006116208 0.0023274215 1.393905 AAUUAA,GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 1 813 0.003058104 0.0011796520 1.374276 AAAAAA AAAAAA
TRA2B 17 7329 0.027522936 0.0106226650 1.373489 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SNRNP70 2 1237 0.004587156 0.0017941145 1.354328 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM46 10 4554 0.016819572 0.0066011240 1.349357 AAUGAA,AUCAAG,AUGAAA,AUGAAG,AUGAUA,AUGAUG,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC4 2 1251 0.004587156 0.0018144033 1.338105 AAAAAA,AAAAAG AAAAAA,AAAAAG
LIN28A 9 4315 0.015290520 0.0062547643 1.289610 AGGAGA,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPAB 3 1782 0.006116208 0.0025839306 1.243070 AAAGAC,AAGACA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
FXR2 6 3434 0.010703364 0.0049780156 1.104422 AGACAG,GACAAA,GACAGG,UGACAA,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
TRA2A 13 6871 0.021406728 0.0099589296 1.104002 AAAGAA,AAGAAG,AAGAGG,AGAAGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBMX 9 4925 0.015290520 0.0071387787 1.098888 AAGAAG,AAGGAA,AGAAGG,AGGAAG,AGUAAC,GAAGGA,GGAAGG,GUAACA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SNRPB2 1 991 0.003058104 0.0014376103 1.088965 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NONO 2 1498 0.004587156 0.0021723567 1.078339 GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPL 2 14 0.1363636 0.0009824469 7.116864 ACACAA,CACAAA AAAUAA,AAAUAC,AACAAA,ACACCA,ACAUAA,ACAUAC,CACAAC,CACCAC,CAUAAA,CAUACA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SNRPB2 3 288 0.009523810 0.0014560661 2.709463 AUUGCA,GUAUUG,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 AAGGAG,AGGAGC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PUM2 5 764 0.014285714 0.0038542926 1.890035 GUAAAU,UAAAUA,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACGA,GAAACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2B 9 1447 0.023809524 0.0072954454 1.706471 AAAGAA,AAGAAC,AGAAGG,AGGAAA,GAAAGA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
MSI1 5 961 0.014285714 0.0048468360 1.559458 AGGAGG,AGUAAG,AGUUAG,UAGGUA,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,AUUUAA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PUM1 12 2172 0.030952381 0.0109482064 1.499356 AAUAUU,AAUGUU,ACAUAA,AUUGUA,GUAAAU,GUAAUA,UAAAUA,UAAUGU,UGUAAA,UGUACA,UUGUAC AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUUUAA,CUAAAU,GAAAAC,UAAAAC,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAG,GACAAA,GGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AAAUAA,GAUAAA,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAAAAA,AAUUUA,AUUUAU,UAUUUA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,ACAAAU,ACGAAU,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAAGAA,AAGAAA,GAAAGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGACAG,AGGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PPIE 46 9262 0.111904762 0.0466696896 1.261714 AAAAAA,AAAAAU,AAAAUU,AAAUAA,AAAUUA,AAAUUU,AAUAAU,AAUAUU,AAUUAA,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAAUU,AUUAAU,AUUUAA,AUUUAU,AUUUUU,UAAAUA,UAAAUU,UAAUAA,UAAUUU,UAUUUA,UUAAAA,UUAAAU,UUAAUA,UUAUUU,UUUAAA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AGAUCA,GAGACA,GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AAAAAA,AAUUUA,AGGAAA,AGUAAG,AGUUAG,AGUUUG,UAGGUA,UAGUAA,UAGUAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCCUUC,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,UAUUUA,UUAUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UAUUUA,UGUUUU,UUAUUU,UUGUUU,UUUAGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AAAUUU,AAUUUU,AUUUUG,AUUUUU,CUUUUA,GUUUUU,UAAAUU,UUAAAU,UUAUUU,UUUAAA,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AAAAAA,AUUUAU,GUAUCU,UAUUUA,UUAUUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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