ENSG00000104375:-:8:98767242:98774819

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000104375:-:8:98767242:98774819 ENSG00000104375 ENST00000523601 - 8 98767243 98774819 210 UAAACUAAAAAAGCUGAGUGAAGACAGUUUGACUAAGCAGCCUGAAGAAGUUUUUGAUGUAUUAGAGAAGCUUGGAGAAGGGUCUUAUGGAAGUGUAUUUAAAGCAAUACACAAGGAAUCCGGUCAAGUUGUCGCAAUUAAACAAGUACCUGUUGAAUCAGAUCUUCAGGAAAUAAUCAAAGAAAUUUCCAUAAUGCAGCAAUGUGACAGUAAACUAAAAAAGCUGAGUGAAGACAGUUUGACUAAGCAGCCUGAAGAAG circ
ENSG00000104375:-:8:98767242:98774819 ENSG00000104375 ENST00000523601 - 8 98767243 98774819 22 CAAUGUGACAGUAAACUAAAAA bsj
ENSG00000104375:-:8:98767242:98774819 ENSG00000104375 ENST00000523601 - 8 98774810 98775019 210 UGAUUAUUUUUGGAGGUGUUGCUGGGCACAUGAGGAACAGGGCUUGAAAGGAGAAUGUUUACUAUGUAUGUUUUUAUAUUGUUUGAGUCUUCUGAAUAUAUUAAAAUAAAAUUAAAAACUUGGUAAAAUUUUAAAAAUUAAAAAUUUUGUAAAAGGUCUUUAAAGAAAAUAUUUUCUUUCUUCUUUCUUUUUUAAAUCAGUAAACUAAAA ie_up
ENSG00000104375:-:8:98767242:98774819 ENSG00000104375 ENST00000523601 - 8 98767043 98767252 210 AAUGUGACAGGUAUGAAGAGAUUUUAUUUCUUUGCUUACCCUUGUUUUGACGAGUUUUGCUAAUAAAAUAUAACAAAAUUUAUUCUUUGAUCAUCUGUUUAGUUUUCAUUUCUUUUUCUUUUCUUUUUUUUGAGACAGGGUUUUGCCGUUGUUGCCCAGGCUGGAGUGCAAUGGCGCCAUCUCGGCUCACCACAACCUCCGCUUUCUGGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 407 0.01428571 0.0005912752 4.594600 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
TUT1 1 678 0.00952381 0.0009840095 3.274795 CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 1 688 0.00952381 0.0009985015 3.253702 AAGAAG AAGAAG
IGHMBP2 1 813 0.00952381 0.0011796520 3.013177 AAAAAA AAAAAA
PABPC4 2 1251 0.01428571 0.0018144033 2.977006 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPM 1 999 0.00952381 0.0014492040 2.716278 AAGGAA AAGGAA,GAAGGA,GGGGGG
ZCRB1 2 1605 0.01428571 0.0023274215 2.617769 AAUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
EIF4B 1 1179 0.00952381 0.0017100607 2.477491 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPAB 2 1782 0.01428571 0.0025839306 2.466934 AAGACA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SNRNP70 1 1237 0.00952381 0.0017941145 2.408267 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 1 1277 0.00952381 0.0018520827 2.362390 UAUUUA AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPD 3 2837 0.01904762 0.0041128408 2.211404 AAAAAA,UAUUUA,UUAGAG AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RALY 1 1553 0.00952381 0.0022520629 2.080292 UUUUUG UUUUUC,UUUUUG,UUUUUU
RBM24 2 2357 0.01428571 0.0034172229 2.063677 GAGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ENOX1 3 3195 0.01904762 0.0046316558 2.040011 AAGACA,AAUACA,AGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC5 2 2400 0.01428571 0.0034795387 2.037605 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SYNCRIP 1 1634 0.00952381 0.0023694485 2.006987 AAAAAA AAAAAA,UUUUUU
RBMX 5 4925 0.02857143 0.0071387787 2.000824 AAGAAG,AAGGAA,AAGUGU,AGAAGG,AUCAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPL 5 5085 0.02857143 0.0073706513 1.954709 AAACAA,AAAUAA,AAUACA,ACACAA,CACAAG AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS3 3 3429 0.01904762 0.0049707696 1.938070 AAAUAA,AUUAAA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
AGO2 1 1830 0.00952381 0.0026534924 1.843646 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPU 1 1965 0.00952381 0.0028491350 1.741015 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS1 3 4064 0.01904762 0.0058910141 1.693023 AUUUAA,CUAAAA,UAAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPCL1 1 2062 0.00952381 0.0029897078 1.671534 UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
TRA2B 6 7329 0.03333333 0.0106226650 1.649820 AAAGAA,AAGAAG,AAGGAA,AGAAGG,AGGAAA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPA3 1 2140 0.00952381 0.0031027457 1.617993 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 1 2152 0.00952381 0.0031201361 1.609930 AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ZFP36 24 28400 0.11904762 0.0411588414 1.532264 AAAAAA,AAAAAG,AAAAGC,AAACAA,AAAGAA,AAAGCA,AAAUAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,ACAAGG,ACAAGU,ACCUGU,AGGAAA,AGUAAA,AUUUAA,CAAAGA,CAAGGA,CAAGUA,UAAACA,UAAGCA,UAUUUA,UUUAAA AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
FXR2 2 3434 0.01428571 0.0049780156 1.520931 AGACAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
DAZAP1 4 5964 0.02380952 0.0086445016 1.461684 AAAAAA,AGGAAA,AGUAAA,AGUUUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
SRSF4 2 3740 0.01428571 0.0054214720 1.397817 AAGAAG,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SART3 1 2634 0.00952381 0.0038186524 1.318475 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TRA2A 4 6871 0.02380952 0.0099589296 1.257476 AAAGAA,AAGAAA,AAGAAG,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM5 4 6879 0.02380952 0.0099705232 1.255798 AAAAAA,AAGGAA,CAAGGA,GAAGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
SRSF10 9 13860 0.04761905 0.0200874160 1.245247 AAAGAA,AAGAAA,AAGAAG,AAGACA,AAGGAA,AGAGAA,CAAAGA,GAGAAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
QKI 1 2805 0.00952381 0.0040664663 1.227763 UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ELAVL3 1 2867 0.00952381 0.0041563169 1.196233 UAUUUA AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPA2B1 5 8607 0.02857143 0.0124747476 1.195563 AAGAAG,AAGGAA,AGAAGC,AUUUAA,CAAGGA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
LIN28A 2 4315 0.01428571 0.0062547643 1.191546 GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
TIAL1 6 10182 0.03333333 0.0147572438 1.175542 AAAUUU,AGUUUU,CAGUUU,GUUUUU,UUUAAA,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 2 4554 0.01428571 0.0066011240 1.113790 AAUCAA,AUCAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DAZAP1 1 36 0.09090909 0.002423369 5.229338 AGUAAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AGUAAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
FXR2 6 730 0.016666667 0.0036829907 2.178016 AGACAG,GACAGG,GACGAG,UGACAG,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
KHDRBS1 17 1945 0.042857143 0.0098045143 2.128018 AUAAAA,CAAAAU,CUAAAA,UAAAAA,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
PPIE 79 9262 0.190476190 0.0466696896 2.029053 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAUA,AAUAUU,AAUUAA,AAUUUA,AAUUUU,AUAAAA,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAUAA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAUAU,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
NONO 2 364 0.007142857 0.0018389762 1.957598 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
KHDRBS3 12 1646 0.030952381 0.0082980653 1.899203 AAAUAA,AAUAAA,AUAAAA,AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUUG,GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TARDBP 7 1034 0.019047619 0.0052146312 1.868974 GAAUGU,GUUGUU,GUUUUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TIAL1 42 5597 0.102380952 0.0282043531 1.859958 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 72 9826 0.173809524 0.0495112858 1.811678 AAUUUA,AAUUUU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUAA,CUUUCU,CUUUUU,GAUUUU,GUUUUC,GUUUUU,UAUAUU,UAUGUU,UAUUGU,UAUUUU,UCAUUU,UCUUUU,UUAGUU,UUAUAU,UUAUUU,UUCAUU,UUCUUU,UUUACU,UUUAGU,UUUAUA,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPC 13 2006 0.033333333 0.0101118501 1.720919 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 34 5140 0.083333333 0.0259018541 1.685838 AUUUUC,AUUUUG,AUUUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUCAGU,UCAGUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ELAVL1 20 3309 0.050000000 0.0166767432 1.584091 AUUUAU,UAGUUU,UAUUUU,UGUUUU,UUAGUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PTBP1 48 8003 0.116666667 0.0403264813 1.532593 AUUUUC,AUUUUU,CCAUCU,CUUCUU,CUUUCU,CUUUUC,CUUUUU,GUCUUU,UAUUUU,UCUUCU,UCUUUC,UCUUUU,UUAUUU,UUCUUC,UUCUUU,UUUCUU,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPL 7 1419 0.019047619 0.0071543732 1.412713 AAAUAA,AACAAA,AAUAAA,ACCACA,CACAAC,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
U2AF2 5 1071 0.014285714 0.0054010480 1.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,GGAGAA,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 AUCAUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AUCAUC,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAUUUA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 CGUUGU,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACCACA,AUCAUC,CACCAC,CAUCUG,CCACAA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,GUUGUU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AAAGGU,AGGUAU,AGGUCU,GGUAAA,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home