ENSG00000120306:+:5:140194445:140194652

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000120306:+:5:140194445:140194652 ENSG00000120306 MSTRG.27034.6 + 5 140194446 140194652 207 GUGCACUUUACAGGUCCCCGAUGAACCAAGAGAACCCUCCACCAUAUCCAGGCCCUGGUCCAACGGCCCCAUACCCACCUUAUCCACCACAACCAAUGGGUCCAGGACCUAUGGGGGGACCCUACCCACCUCCUCAAGGGUACCCCUACCAAGGAUACCCACAGUACGGCUGGCAGGGUGGACCUCAGGAGCCUCCUAAAACCACAGGUGCACUUUACAGGUCCCCGAUGAACCAAGAGAACCCUCCACCAUAUCCA circ
ENSG00000120306:+:5:140194445:140194652 ENSG00000120306 MSTRG.27034.6 + 5 140194446 140194652 22 UAAAACCACAGGUGCACUUUAC bsj
ENSG00000120306:+:5:140194445:140194652 ENSG00000120306 MSTRG.27034.6 + 5 140194246 140194455 210 AGACAAAAGGCAAAUAAAUAUAUAAGAUAAUUGCCAAUUAUAGUGAUGGUGAGAAGGAAACAAAAUGGGCAGAGCUAGAGAUUUGCACAAGGCUUGAUACACCUUGAAGGUAUUUUGUAAAUGAUCUUAUGGGUUAGGAUUUUAUUCCUGAUGAUUUCCACAGUUAAAUGCAAAUAAUUUUCAUUCUUUUUGUCUCUUAGGUGCACUUUA ie_up
ENSG00000120306:+:5:140194445:140194652 ENSG00000120306 MSTRG.27034.6 + 5 140194643 140194852 210 AAAACCACAGGUGUGUGUCUCUGAAUAUGUGGGUGUGCAGUCCCGUGUCACUAAAGGAAAUGUUUGCAUGUUUUCUUUGGCAGAGAAGAAAUUCUUUCCAGCCUUUGCAACUUGUGCUUGAUGUCCCCAAAGCUUGAUGAUGGCUUAGGGUGGAUUCUCACUCCUGAGAAGAGGCCCAAGUCAGCUCUGCCUGCUACAUUCACACCUCUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM6 3 1054 0.019323671 0.001528910 3.659794 AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA3 4 2140 0.024154589 0.003102746 2.960680 AGGAGC,CAAGGA,CCAAGG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IFIH1 1 904 0.009661836 0.001311530 2.881047 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPM 1 999 0.009661836 0.001449204 2.737037 GGGGGG AAGGAA,GAAGGA,GGGGGG
PABPC3 1 1234 0.009661836 0.001789767 2.432526 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
G3BP1 20 14282 0.101449275 0.020698980 2.293127 ACCCAC,ACCCCU,AGGCCC,CACAGG,CAGGCC,CCACAG,CCAGGC,CCAUAC,CCCACA,CCCACC,CCCAUA,CCCCUA,CCCUAC,CCCUCC,CGGCCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
YBX1 8 7119 0.043478261 0.010318332 2.075084 AACCAC,ACCACA,CAACCA,CACCAC,CCACAA,CCACCA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
G3BP2 1 1644 0.009661836 0.002383941 2.018949 AGGAUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPC 3 3471 0.019323671 0.005031636 1.941270 GGAUAC,GGGGGG,GGGUAC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPLL 3 3534 0.019323671 0.005122936 1.915326 ACCACA,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PCBP1 14 13384 0.072463768 0.019397595 1.901382 AAACCA,AACCAA,ACCCUC,ACCUUA,CAUACC,CCAUAC,CCCACC,CCCUCC,CCUACC,CUACCC,GGGGGG AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
PCBP2 11 11045 0.057971014 0.016007907 1.856547 AAACCA,AACCAA,AACCCU,ACCCUA,ACCUUA,CCCUCC,CCUCCA,CCUCCU,GGGGGG AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPU 1 1965 0.009661836 0.002849135 1.761773 GGGGGG AAAAAA,CCCCCC,GGGGGG,UUUUUU
SAMD4A 3 3992 0.019323671 0.005786671 1.739564 CUGGCA,CUGGUC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPL 4 5085 0.024154589 0.007370651 1.712433 ACCACA,CACAAC,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM5 5 6879 0.028985507 0.009970523 1.539591 AGGGUA,AGGGUG,CAAGGA,CAAGGG,GGGGGG AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
FUS 2 3648 0.014492754 0.005288145 1.454498 GGGGGG,GGGUGG AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPA2B1 6 8607 0.033816425 0.012474748 1.438714 AGGAGC,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GGAGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
KHDRBS1 2 4064 0.014492754 0.005891014 1.298744 CUAAAA,UAAAAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPK 5 9304 0.028985507 0.013484843 1.103993 CAUACC,CCAUAC,CCCCAU,CCCCUA,GGGGGG AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF6 1 68 0.09090909 0.004519256 4.330267 CACAGG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
G3BP1 1 69 0.09090909 0.004584752 4.309509 CACAGG ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
SRSF9 1 134 0.09090909 0.008842023 3.361976 GGUGCA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 3 625 0.18181818 0.041000786 2.148773 ACAGGU,CACAGG,GGUGCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AGAAGA AAAAGA,AGAAGA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGU,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF4 5 776 0.014285714 0.0039147521 1.867580 GGUGUG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TRA2B 10 1447 0.026190476 0.0072954454 1.843974 AAGGAA,AGAAGA,AGAAGG,AGGAAA,AUAAGA,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,UAAAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPL 8 1419 0.021428571 0.0071543732 1.582638 AAACAA,AAAUAA,AACAAA,AAUAAA,ACCACA,CACAAG,CACACC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAGAAA,AAGAGG,AGAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUGUGU,UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAU,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,UGUGUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
NELFE 4 1059 0.011904762 0.0053405885 1.156468 GGUUAG,GUCUCU,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUGU,UGUGUG,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
YBX1 5 1321 0.014285714 0.0066606207 1.100845 AACCAC,ACCACA,CACACC,GCCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AAAGGA,AAUGAU,AGAAGA,AGAGAA,AGAGAU,CAGAGA,CUAGAG,CUGAGA,GAAGAA,GACAAA,UAGAGA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home