ENSG00000108094:-:10:35025131:35033273

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000108094:-:10:35025131:35033273 ENSG00000108094 ENST00000688044 - 10 35025132 35033273 1497 AUGCCAACACUAUUUGUGGAGUCAGUUUUGGAAGUGCAUGGUAAAUUUGUUCAGCUUAUCAACACUGUUUUGAAUGGUGAUCAGCAUUUUAUGAGUGCGUUGGAUAAGGCCCUUACGUCAGUUGUAAAUUACAGAGAACCUAAGUCUGUUUGCAAAGCACCUGAACUGGUAAGUUUGGUGGUUGCUGAAAAGUAAUCUUAUGAAAAGUCAGUAUUAGAAAAUGAGAACUCAGAAUAUCAAAUUAAUUUGGUUUUUGUAGCAUUUUUCAGAAAAAUAGAAGGAAAAUUAUCUACAUUGUAUAUAGUUUGGCAUUUAUGUAAGGAAUGCAAUAUACUAUGUGUCUUAAAGAAUAACCAUUUUACAAAGUUUGGGUUUUAAUGUAUAUCUACUUUGAAAUAAUUUGCAAUACUUUUCAUGUAGAUUCUGUUACAUCUGAAAUCUAAAGGAAAUCUGAUGAUAAAGUUUGGGUAACCUUUGAAGGAAACUUGCUUACAAGAUUUUUGUAACUUUUUUUUAAAGUACUUGUUCAAUGUCAAAAAUUAUAAAACCACUCGAAACUCACCUAGGUGUUCUUUUAAAAAUUUGUAUUACUUAUAUCAGUUGCUUUAUUGGUCAAUAAGUGAUGAUUUGAUAUUUGACUUGUUCUUUUUAAAAAUUUACCUUAUGAUGUAUAUUUUAUUUAGUUUACAUUUAUGAUUAUUACAUAAAGCUUUAGAAGCCUGGUGUGGUUGUGCAUGCCUGUAGUCCCAACUACUUGGGAGGCUGAGGCAGGAGGAUCCUUUGAGCCUAGGAGUUUGAGGCUGCAGUGAGCUAUGAUCUUGUCCACUGCAAUCCAGCCUGGCAACAGAGCAAGACCCGGUCUCUAAAAAAAACAGCAAAAAUUCUGUCCGCUGAUCUUACCUUGUAUCACCACUUUGCCUCCUUUGAGGCGUGAUAUAUACAGAAGCACCCUUUGUAAGAUUUAUUAUCAAUUUCUACAUGAGCUUGCUAAGUACUGUGACAACUUACUGAAGAAGUCAGCGAAAGGGAUGACAGAGAAUGAAGUGGAAGACAGGCUCACGAGCUUCAUCACAGUGUUCAAAUACAUUGAUGACAAGGACGUCUUUCAAAAGUUCUACGCAAGAAUGCUGGCAAAACGUUUAAUUCAUGGGUUAUCCAUGUCUAUGGACUCUGAAGAAGCCAUGAUCAACAAAUUAAAGCAAGCCUGUGGUUAUGAGUUUACCAGCAAGCUACAUCGGAUGUAUACAGAUAUGAGUGUCAGCGCUGAUCUCAACAAUAAGUUCAACAAUUUUAUCAAAAACCAAGACACAGUAAUAGAUUUGGGAAUUAGUUUUCAAAUAUAUGUUCUACAGGCUGGUGCGUGGCCUCUUACUCAGGCUCCUUCAUCUACGUUUGCAAUUCCCCAGGAAUUAGAAAAAAGUGUACAGAUGUUUGAAUUAUUUUAUAGCCAACAUUUCAGUGGAAGGAAACUUACAUGGUUACAUUAUCUGUGUACAGAUGCCAACACUAUUUGUGGAGUCAGUUUUGGAAGUGCAUGGUAAAUUUGU circ
ENSG00000108094:-:10:35025131:35033273 ENSG00000108094 ENST00000688044 - 10 35025132 35033273 22 UCUGUGUACAGAUGCCAACACU bsj
ENSG00000108094:-:10:35025131:35033273 ENSG00000108094 ENST00000688044 - 10 35033264 35033473 210 GUGAGCCACUGUGCCCAGCCUUCAACACCAAAGUUGUAAAUUUCUAAGACCGUCUUAGCUAAAACCAUUUUCUGAGAAGUGUGCAUGUGUGAAACAUAAUUUCCUUGAGGAAAAAUUUACUAAUAAGUCUAAUAAACCUCAUAGUUUGGAUAUCCUUGAACCUCUUAAAAUGUGGUUUUGUACUUAUAUUUCAUUUUUAGAUGCCAACAC ie_up
ENSG00000108094:-:10:35025131:35033273 ENSG00000108094 ENST00000688044 - 10 35024932 35025141 210 CUGUGUACAGGUAAAAUGCAUUUAAUUAUAUCUGGCUUAAUGAAAUUUACCUGAUGAUUAUAUUAAUUUAGAAAGAGGUUUUCUAUGGCCCAAUUACAGUUUUUAACCUUUUCUCCUCCAUCAACCUUUCCCCAUUAAAGCAACUAACAAUGAAAUCCAAGUAUAGCACUUUUUCAUAGUAUUUUAUAAUUACACUGUUUAUAAUCUUGC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM41 18 1318 0.012692051 0.0019115000 2.731148 AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBMS1 6 497 0.004676019 0.0007217036 2.695802 AUAUAC,AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ESRP1 1 156 0.001336005 0.0002275250 2.553829 AGGGAU AGGGAU
AKAP1 4 426 0.003340013 0.0006188101 2.432285 AUAUAU,UAUAUA AUAUAU,UAUAUA
PUM2 19 1890 0.013360053 0.0027404447 2.285444 GUAAAU,GUAGAU,GUAUAU,UACAUA,UACAUC,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPM 8 999 0.006012024 0.0014492040 2.052590 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBMS3 10 1283 0.007348029 0.0018607779 1.981452 AAUAUA,AUAUAG,AUAUAU,UAUAGC,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBMY1A1 3 489 0.002672011 0.0007101099 1.911811 ACAAGA,CAAGAC ACAAGA,CAAGAC
ZFP36L2 9 1277 0.006680027 0.0018520827 1.850705 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
FXR1 2 411 0.002004008 0.0005970720 1.746911 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 5 831 0.004008016 0.0012057377 1.732972 AAGCAC,AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ELAVL4 35 5105 0.024048096 0.0073996354 1.700397 AAAAAA,AUCUAA,AUUUAU,UAUCUA,UAUUUA,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL3 19 2867 0.013360053 0.0041563169 1.684548 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
MATR3 4 739 0.003340013 0.0010724109 1.638996 AAUCUU,AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBFOX2 2 452 0.002004008 0.0006564894 1.610045 UGCAUG UGACUG,UGCAUG
HNRNPA0 2 453 0.002004008 0.0006579386 1.606863 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
CNOT4 1 314 0.001336005 0.0004564992 1.549241 GACAGA GACAGA
ERI1 3 632 0.002672011 0.0009173461 1.542388 UUCAGA,UUUCAG UUCAGA,UUUCAG
IGHMBP2 4 813 0.003340013 0.0011796520 1.501493 AAAAAA AAAAAA
A1CF 9 1642 0.006680027 0.0023810421 1.488261 AUAAUU,AUCAGU,CAGUAU,GAUCAG,UCAGUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SRP14 4 847 0.003340013 0.0012289250 1.442457 CCUGUA,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
TUT1 3 678 0.002672011 0.0009840095 1.441182 AAAUAC,AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
TIAL1 57 10182 0.038744155 0.0147572438 1.392555 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 103 18315 0.069472278 0.0265436196 1.388072 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAUU,AUAUAU,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAUU,UAAUUU,UAUAAA,UAUAUA,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPD 15 2837 0.010688043 0.0041128408 1.377791 AAAAAA,AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL2 100 18468 0.067468270 0.0267653478 1.333843 AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUU,CAUUUU,CUUAUA,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUUA,UAUUUG,UAUUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAUU,UUACUU,UUAGUU,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCUUU,UUGUAU,UUUAAU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 29 5554 0.020040080 0.0080503280 1.315769 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGGUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PUM1 30 5823 0.020708083 0.0084401638 1.294851 ACAUAA,AUUGUA,CAGAAU,CUUGUA,GUAAAU,GUAAUA,GUAGAU,GUAUAU,UAAUGU,UACAUA,UACAUC,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ZCRB1 7 1605 0.005344021 0.0023274215 1.199193 AAUUAA,GAAUUA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AGO2 8 1830 0.006012024 0.0026534924 1.179958 AAAAAA,AAAGUG,AAGUGC,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM42 1 407 0.001336005 0.0005912752 1.176024 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
SYNCRIP 7 1634 0.005344021 0.0023694485 1.173374 AAAAAA,UUUUUU AAAAAA,UUUUUU
CPEB4 3 821 0.002672011 0.0011912456 1.165455 UUUUUU UUUUUU
DDX19B 3 821 0.002672011 0.0011912456 1.165455 UUUUUU UUUUUU
EIF4A3 3 821 0.002672011 0.0011912456 1.165455 UUUUUU UUUUUU
CPEB2 10 2261 0.007348029 0.0032780993 1.164498 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PABPC3 5 1234 0.004008016 0.0017897669 1.163117 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPCL1 9 2062 0.006680027 0.0029897078 1.159849 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC4 5 1251 0.004008016 0.0018144033 1.143393 AAAAAA,AAAAAG AAAAAA,AAAAAG
SART3 11 2634 0.008016032 0.0038186524 1.069825 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZNF638 7 1773 0.005344021 0.0025708878 1.055659 CGUUGG,GGUUGU,GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RALY 6 1553 0.004676019 0.0022520629 1.054034 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF11 2 688 0.002004008 0.0009985015 1.005052 AAGAAG AAGAAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF5 1 44 0.09090909 0.002947341 4.946939 UACAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF9 1 134 0.09090909 0.008842023 3.361976 GAUGCC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF2 1 479 0.09090909 0.031438302 1.531901 AGAUGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GAUGCC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
A1CF 7 598 0.019047619 0.0030179363 2.657976 AGUAUA,AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
QKI 7 904 0.019047619 0.0045596534 2.062615 ACUAAC,ACUAAU,ACUUAU,CUAACA,CUCAUA,UAACCU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AAUGAA,AUGAAA,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AUUUAA,GCUUAA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PPIE 51 9262 0.123809524 0.0466696896 1.407565 AAAAAU,AAAAUU,AAAUUU,AAUAAA,AAUUAU,AAUUUA,AUAAUU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUUAA,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUAA,UAAUUA,UAAUUU,UAUAAU,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAUU,UUAUAA,UUAUAU,UUUAAU,UUUAUA,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SF1 6 1294 0.016666667 0.0065245869 1.353007 ACUAAC,ACUAAU,ACUUAU,CUAACA,UAACAA,UACUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBMS3 2 562 0.007142857 0.0028365578 1.332360 UAUAGC,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 ACUAAC,ACUAAU,CUAACA,CUAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM24 3 888 0.009523810 0.0044790407 1.088349 AGUGUG,GUGUGA,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAGG,AGAAAG,GAAAGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUA,AUAUUU,AUUUAA,AUUUAC,AUUUAG,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUAUA,CUUUUU,GUUUUC,GUUUUU,UAAUUU,UAUAUU,UAUUUU,UCAUUU,UUAAUU,UUAUAU,UUCAUU,UUUAAU,UUUACU,UUUAUA,UUUCAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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