ENSG00000124784:+:6:7411331:7414390

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000124784:+:6:7411331:7414390 ENSG00000124784 MSTRG.27608.2 + 6 7411332 7414390 311 GUGUUUAAGCGAGCAUAUAUUCCUAGAACCUUGAAUGAAGUGAAAAAUUAUGAGAGGGAUAUGGACAUAAUUAUGAAAUUGAAGGAAGAGGACAUGGCCAUGAAUGCCCAACAAGAUAAUAUUCUAUACCAGACUGUUACAGGAUUGAAGAAAGAUUUGUCAGGAGUUCAGAAGAAAAUCAAGUGGAGGAAAGGACUUGUUCUGAUUCAGAAGAUAUUGGAAGCUCUGAGUGCUCUGACACAGACUCUGAAGAGCAGGGAGACCAUGCCCGCCCCAAGAAACACACCACGGACCCUGACAUUGAUAAAAAAGUGUUUAAGCGAGCAUAUAUUCCUAGAACCUUGAAUGAAGUGAAAAAUUA circ
ENSG00000124784:+:6:7411331:7414390 ENSG00000124784 MSTRG.27608.2 + 6 7411332 7414390 22 UUGAUAAAAAAGUGUUUAAGCG bsj
ENSG00000124784:+:6:7411331:7414390 ENSG00000124784 MSTRG.27608.2 + 6 7411132 7411341 210 AGUGUUCUAUCAUUAGUAGUGUUACUUUUGGGACACCACAUCACAGAUGGGAUACCAGUGUGUGCAGACAGCUUAGCCAAGCAUCAGUGUUAGGGAUGAAUGAAUAUAUAGAUUCCCCUGUAACCUGAUGGAGGAGUAUGCUGUGUGAAUGUGAGAAGUGUAUGAAUAACAGUUUUGAUUUUGCUUUUCCUCUCUGUUAGGUGUUUAAGC ie_up
ENSG00000124784:+:6:7411331:7414390 ENSG00000124784 MSTRG.27608.2 + 6 7414381 7414590 210 UGAUAAAAAAGUAAGCAAUGAAAUACCUUCCCCUUUUCUUUAGUGUGGGAGCACAGCCGCUCUUAUUUCUCUUUGCUCAAGGAUCUAGCUAGAUUAUGAUGGCUGAAAACAUUAUUGAUAAGUACCUCUAAUUACAGUUUUAAUACCUAAGUGUGAACUUGACUUUUGGUGGUAACAUUAUCUUGAGAUUGGGCUGCUCAUCAGAGCACC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.006430868 0.0002275250 4.820916 AGGGAU AGGGAU
SUPV3L1 1 199 0.006430868 0.0002898408 4.471681 CCGCCC CCGCCC
ERI1 2 632 0.009646302 0.0009173461 3.394438 UUCAGA UUCAGA,UUUCAG
AKAP1 1 426 0.006430868 0.0006188101 3.377445 AUAUAU AUAUAU,UAUAUA
HNRNPA0 1 453 0.006430868 0.0006579386 3.288989 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.006430868 0.0007101099 3.178899 ACAAGA ACAAGA,CAAGAC
HNRNPM 2 999 0.009646302 0.0014492040 2.734715 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
NONO 3 1498 0.012861736 0.0021723567 2.565752 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
IGHMBP2 1 813 0.006430868 0.0011796520 2.446652 AAAAAA AAAAAA
PABPN1 2 1222 0.009646302 0.0017723764 2.444291 AGAAGA AAAAGA,AGAAGA
SNRNP70 2 1237 0.009646302 0.0017941145 2.426704 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC4 2 1251 0.009646302 0.0018144033 2.410481 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBMS3 2 1283 0.009646302 0.0018607779 2.374070 AUAUAU,CAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TRA2A 15 6871 0.051446945 0.0099589296 2.369023 AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
AGO2 3 1830 0.012861736 0.0026534924 2.277121 AAAAAA,AAAGUG,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF4 7 3740 0.025723473 0.0054214720 2.246329 AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC5 4 2400 0.016077170 0.0034795387 2.208046 AGAAAA,AGAAAG,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TARDBP 4 2654 0.016077170 0.0038476365 2.062969 GAAUGA,UGAAUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
A1CF 2 1642 0.009646302 0.0023810421 2.018383 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 2 1644 0.009646302 0.0023839405 2.016628 AGGAUU,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
EIF4B 1 1179 0.006430868 0.0017100607 1.910966 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
KHDRBS2 2 1858 0.009646302 0.0026940701 1.840189 AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPL 7 5085 0.025723473 0.0073706513 1.803221 AAACAC,AACACA,ACACAC,ACACCA,ACAUAA,CACACC,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM46 6 4554 0.022508039 0.0066011240 1.769657 AAUCAA,AAUGAA,AUCAAG,AUGAAA,AUGAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SART3 3 2634 0.012861736 0.0038186524 1.751950 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPLL 4 3534 0.016077170 0.0051229360 1.649971 ACACAC,ACACCA,CACACC,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
CELF5 1 1415 0.006430868 0.0020520728 1.647932 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPDL 11 8759 0.038585209 0.0126950266 1.603784 AACCUU,ACACCA,ACCACG,ACCAGA,ACCUUG,AGAUAU,AUACCA,CCAGAC,CGAGCA,GCGAGC,UCUGAC AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
TRA2B 9 7329 0.032154341 0.0106226650 1.597868 AAGGAA,AGAAGA,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
IGF2BP3 5 4815 0.019292605 0.0069793662 1.466880 AAAAUC,AAACAC,AAAUCA,AACACA,ACACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ZCRB1 1 1605 0.006430868 0.0023274215 1.466281 GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 1 1634 0.006430868 0.0023694485 1.440462 AAAAAA AAAAAA,UUUUUU
RBMX 5 4925 0.019292605 0.0071387787 1.434299 AAGGAA,AAGUGU,AGGAAG,AGUGUU,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
KHDRBS3 3 3429 0.012861736 0.0049707696 1.371544 AGAUAA,AUAAAA,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SRSF5 9 8869 0.032154341 0.0128544391 1.322747 AGAAGA,AGGAAG,CACAGA,CACGGA,GAAGAA,GAGGAA,GGAAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
ZNF638 1 1773 0.006430868 0.0025708878 1.322747 UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 1 1782 0.006430868 0.0025839306 1.315446 GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRSF7 15 14481 0.051446945 0.0209873716 1.293564 AAAGGA,AAGGAC,AGAAGA,AGAGGA,AGGAAG,AGGACA,AUUGAU,GAAGAA,GAAUGA,GAGGAA,GAUUGA,UGAGAG,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
HNRNPD 2 2837 0.009646302 0.0041128408 1.229841 AAAAAA,AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPU 1 1965 0.006430868 0.0028491350 1.174490 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
CSTF2 1 1967 0.006430868 0.0028520334 1.173023 GUGUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SRSF10 13 13860 0.045016077 0.0200874160 1.164148 AAAGGA,AAGAAA,AAGAGG,AAGGAA,AGAGGA,AGAGGG,GAAAGA,GAGACC,GAGAGG,GAGGAA,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
ENOX1 2 3195 0.009646302 0.0046316558 1.058448 AGGACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
LIN28A 3 4315 0.012861736 0.0062547643 1.040058 AGGAGU,GGAGGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC4 1 7 0.09090909 0.0005239717 7.438792 AAAAAG AAAAAA,AAAAAG
AGO2 1 10 0.09090909 0.0007204611 6.979360 AAAGUG AAAAAA,AAAGUG,UAAAGU
RBMX 2 34 0.13636364 0.0022923762 5.894471 AAGUGU,AGUGUU AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
ZFP36 2 126 0.13636364 0.0083180508 4.035070 AAAAAG,AAAAGU AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF2 1 479 0.09090909 0.0314383023 1.531901 AGUGUU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBM24 9 888 0.023809524 0.0044790407 2.410277 AGUGUG,GUGUGA,GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAG,AUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TARDBP 10 1034 0.026190476 0.0052146312 2.328405 GAAUGA,GAAUGU,GUGAAU,GUGUGU,GUUUUG,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM46 9 1091 0.023809524 0.0055018138 2.113560 AAUGAA,AUCAUU,AUGAAA,AUGAAU,AUGAUG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SRP14 1 218 0.004761905 0.0011033857 2.109602 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF4 6 776 0.016666667 0.0039147521 2.089973 GGUGUU,GUGUGG,GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUGU,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CAAGGA,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBMX 7 1316 0.019047619 0.0066354293 1.521349 AAGUAA,AAGUGU,AGUGUU,GUAACA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPDL 15 2689 0.038095238 0.0135530028 1.490998 AAUACC,ACACCA,ACAUUA,AUACCA,CAUUAG,CUAAGU,CUAGAU,CUAGCU,CUUUAG,GGAGUA,UAACAG,UAAGUA,UUAGCC AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,GUGUUU,GUUUUG,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
SNRPA 10 1947 0.026190476 0.0098145909 1.416042 AGUAGU,AUACCU,AUGCUG,GAUACC,GAUUCC,GUAGUG,GUAUGC,UAUGCU,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGU,GGAGGA,GGAGUA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACACCA,ACCACA,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGUGG,UGUGAG,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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