ENSG00000106976:+:9:128218230:128222860

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000106976:+:9:128218230:128222860 ENSG00000106976 ENST00000627543 + 9 128218231 128222860 1035 GGACUUCUUGCCUCGAGGAUCUGGCAUUGUCACCCGACGUCCCCUGGUCUUGCAGCUGGUCAAUGCAACCACAGAAUAUGCCGAGUUCCUGCACUGCAAGGGAAAGAAAUUCACCGACUUCGAGGAGGUGCGCCUUGAGAUCGAGGCCGAGACCGACAGGGUCACCGGCACCAACAAGGGCAUCUCGCCGGUGCCUAUCAACCUCCGCGUCUACUCGCCGCACGUGCUGAACCUGACCCUGGUGGACCUGCCCGGAAUGACCAAGGUCCCGGUGGGGGACCAACCUCCCGACAUCGAGUUCCAGAUCCGAGACAUGCUUAUGCAGUUUGUCACCAAGGAGAACUGCCUCAUCCUGGCCGUGUCCCCCGCCAACUCUGACCUGGCCAAUUCUGACGCCCUCAAGGUCGCCAAGGAGGUGGACCCCCAGGGCCAGCGCACCAUCGGGGUCAUCACCAAGCUGGACCUGAUGGACGAGGGCACAGAUGCCCGUGAUGUGCUGGAGAACAAGCUGCUCCCCCUGCGCAGAGGCUACAUUGGAGUGGUGAACCGGAGCCAGAAGGACAUUGAUGGCAAGAAGGACAUUACCGCCGCCUUGGCUGCUGAACGAAAGUUCUUCCUCUCCCAUCCAUCUUAUCGCCACUUGGCUGACCGUAUGGGCACGCCCUACCUGCAGAAGGUCCUCAAUCAGCAACUGACGAACCACAUCCGGGACACACUGCCGGGGCUGCGGAACAAGCUGCAGAGCCAGCUACUGUCCAUUGAGAAGGAGGUGGAGGAAUACAAGAACUUCCGCCCUGAUGACCCAGCUCGCAAGACCAAGGCCCUGCUGCAGAUGGUCCAGCAGUUCGCCGUAGACUUUGAGAAGCGCAUUGAGGGCUCAGGAGAUCAGAUCGACACCUACGAACUGUCAGGGGGAGCCCGCAUUAACCGAAUCUUCCACGAGCGCUUCCCUUUCGAGCUGGUCAAGAUGGAGUUUGAUGAGAAGGAACUCCGAAGGGAGAUCAGCUAUGCUAUCAAGAAUAUCCAUGGCAUUAGGGACUUCUUGCCUCGAGGAUCUGGCAUUGUCACCCGACGUCCCCUGGUCU circ
ENSG00000106976:+:9:128218230:128222860 ENSG00000106976 ENST00000627543 + 9 128218231 128222860 22 CAUGGCAUUAGGGACUUCUUGC bsj
ENSG00000106976:+:9:128218230:128222860 ENSG00000106976 ENST00000627543 + 9 128218031 128218240 210 CCCAGGCGACUUGAGGAAAAGUAUUUUCCACCUUUCUGGGCUGCCAUAUGCUCUUAGUUACCUGAAGCCCCUGGGCUAAGGAGCGGUGGAGCCAGCACUUUGGAAGGAGCUUUGGCUUUCCCAGGGGCCGGACAGGUACCCCUGGGACAGAGGGCGCCCCCUCAUAUCUUGACCCUCCUUUGACCUCCAACUCAUUGCAGGGACUUCUUG ie_up
ENSG00000106976:+:9:128218230:128222860 ENSG00000106976 ENST00000627543 + 9 128222851 128223060 210 AUGGCAUUAGGCACGUAUUGGGGCCUGGGAGGGUGGCUGAACCCCAGAAGUAGGGGGUCUGGGACAGAGGCACAGGGAGUGAUGAAGUGGGCCUCCCUCAGGAAGGACUGAAAGCUCUGUUCCCCAGUCCUCUCGACCCCAACUUUCUGGCUCCCUGCAUGACAGGCUCCAGCUUGGGGAGGUGGACCCGGGCCACCCCGCCUACUGCAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 199 0.001932367 0.0002898408 2.737037 CCGCCC CCGCCC
HNRNPA1L2 2 314 0.002898551 0.0004564992 2.666647 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM25 1 268 0.001932367 0.0003898359 2.309431 AUCGGG AUCGGG,CGGGCA,UCGGGC
NXF1 1 286 0.001932367 0.0004159215 2.215986 AACCUG AACCUG
RBMY1A1 2 489 0.002898551 0.0007101099 2.029217 ACAAGA,CAAGAC ACAAGA,CAAGAC
HNRNPA3 12 2140 0.012560386 0.0031027457 2.017264 AAGGAG,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPM 5 999 0.005797101 0.0014492040 2.000071 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
ANKHD1 1 339 0.001932367 0.0004927293 1.971502 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
MATR3 3 739 0.003864734 0.0010724109 1.849511 AAUCUU,AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM8A 2 611 0.002898551 0.0008869128 1.708468 GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ZC3H10 4 1053 0.004830918 0.0015274610 1.661162 CAGCGC,CCAGCG,CGAGCG,GAGCGC CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
HNRNPA2B1 29 8607 0.028985507 0.0124747476 1.216321 AAGAAG,AAGGAA,AAGGAG,AGAAGC,AGGAAC,CAAGAA,CAAGGA,CAAGGG,CCAAGG,CGAAGG,GAAGGA,GCCAAG,GGAGCC,UAGACU,UAGGGA,UUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
SAMD4A 12 3992 0.012560386 0.0057866714 1.118075 CGGGAC,CUGGAC,CUGGCA,CUGGCC,CUGGUC,GCUGGA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
SF1 14 4931 0.014492754 0.0071474739 1.019826 ACCGAC,ACGAAC,ACUGAC,AUUAAC,CACAGA,CACCGA,GCUGAC,UACGAA,UGCUGA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SNRPB2 2 991 0.002898551 0.0014376103 1.011659 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 2 3 0.13636364 0.0002619859 9.023754 UAGGGA,UUAGGG AUAGGG,UUAGGG
HNRNPD 1 12 0.09090909 0.0008514540 6.738352 UUAGGG AAAAAA,AAUUUA,AGAUAU,AGUAGG,UUAGAG,UUAGGA,UUAGGG
PCBP2 1 26 0.09090909 0.0017684045 5.683904 UUAGGG AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG
HNRNPA2B1 2 49 0.13636364 0.0032748232 5.379898 UAGGGA,UUAGGG AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
HNRNPDL 1 35 0.09090909 0.0023578727 5.268867 AUUAGG AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG
PCBP1 1 35 0.09090909 0.0023578727 5.268867 UUAGGG AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG
HNRNPA1 4 119 0.22727273 0.0078595756 4.853829 AGGGAC,GGGACU,UAGGGA,UUAGGG AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 2 65 0.007142857 0.0003325272 4.424957 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PPRC1 2 127 0.007142857 0.0006449012 3.469351 GGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPA3 5 349 0.014285714 0.0017634019 3.018140 AAGGAG,AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SNRPB2 3 288 0.009523810 0.0014560661 2.709463 AUUGCA,GUAUUG,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 GAAGGA AAGGAA,GAAGGA,GGGGGG
FXR2 8 730 0.021428571 0.0036829907 2.540586 GACAGA,GACAGG,GGACAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPA2B1 13 2033 0.033333333 0.0102478839 1.701640 AAGGAG,AGGAGC,AGGGGC,AGUAGG,GAAGCC,GAAGGA,GGAGCC,GGGGCC,GUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ENOX1 4 756 0.011904762 0.0038139863 1.642167 CGGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRSF9 25 4608 0.061904762 0.0232214833 1.414590 AGGAAA,AGGAGC,AUGACA,GAAGCC,GAAGGA,GGAAAA,GGAAGG,GGACAG,GGAGCC,GGAGCG,GGGAGG,GGGUGG,GGUGGA,GGUGGC,UGAAAG,UGAAGC,UGACAG,UGGAGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
FMR1 29 5430 0.071428571 0.0273629585 1.384277 AAGGAG,AGGAAG,AGGCAC,AGGGAG,CUAAGG,CUGGGC,GAAGGA,GACAGG,GAGCGG,GCGACU,GCUAAG,GGACAG,GGCUAA,GGCUGA,GGGCUA,GGGCUG,GUGGCU,UAAGGA,UAGGCA,UGACAG,UGAGGA,UGGCUG AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAAG,AGGUGG,AGUAGG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
G3BP1 16 3431 0.040476190 0.0172914148 1.227018 ACAGGC,ACCCCU,AGGCAC,CACAGG,CCACCC,CCAGGC,CCCAGG,CCCCAG,CCCCGC,CCCCUC,CCCGCC,CCCUCC,UAGGCA ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AGGAAA,AGGAAG,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AGGAAG,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
QKI 3 904 0.009523810 0.0045596534 1.062615 ACUCAU,CUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SRSF1 91 20925 0.219047619 0.1054312777 1.054942 AAGGAC,AAGGAG,ACAGAG,ACAGGG,ACAGGU,ACCCGG,AGAGGG,AGCGGU,AGGAAA,AGGAAG,AGGACU,AGGAGC,AGGCGA,AUGAAG,AUGACA,CACAGG,CAGAGG,CCACCC,CCAGCA,CCAGGG,CCCAGG,CCCCGC,CCCGCC,CCCGGG,CCCUCC,CCCUGC,CCCUGG,CCGGAC,CCGGGC,CCUCCA,CCUGCA,CCUGGG,CGACCC,CGCCCC,CGGACA,CGGGCC,CGGUGG,CUCAGG,CUGAAC,GAAGCC,GAAGGA,GACAGA,GACAGG,GACCCG,GACUGA,GAGCGG,GAGGAA,GAGGCA,GAGGGC,GAUGAA,GCACGU,GCAGGG,GCCGGA,GCGCCC,GCUCCA,GGAAGG,GGACAG,GGACUG,GGAGCC,GGAGCG,GGAGCU,GGAGGG,GGAGGU,GGCACA,GGCACG,GGCCGG,GGGCCA,GGGCCG,GGGGAG,GGUGGA,GGUGGC,UGAACC,UGAAGC,UGACAG,UGAUGA,UGGAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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