ENSG00000197312:+:1:15638306:15643650

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000197312:+:1:15638306:15643650 ENSG00000197312 ENST00000480945 + 1 15638307 15643650 257 GCAACAGAACAUUGAGGAAAACAUGACAAUAGCUAUGGAAGAGGCUCCGGAAAGUUUUGGCCAAGUAGUGAUGCUUUAUAUUAACUGCAAAGUGAAUGGACAUCCUGUGAAAGCCUUUGUUGACUCAGGUGCCCAGAUGACUAUCAUGAGCCAAGCUUGUGCAGAAAGGUGUAACAUAAUGAGACUGGUGGACCGUCGGUGGGCAGGGAUUGCCAAAGGAGUGGGCACCCAGAAGAUUAUUGGAAGGGUACAUCUAGGCAACAGAACAUUGAGGAAAACAUGACAAUAGCUAUGGAAGAGGCUCCGG circ
ENSG00000197312:+:1:15638306:15643650 ENSG00000197312 ENST00000480945 + 1 15638307 15643650 22 GGUACAUCUAGGCAACAGAACA bsj
ENSG00000197312:+:1:15638306:15643650 ENSG00000197312 ENST00000480945 + 1 15638107 15638316 210 AGAUUUUCUGCCAGCUGUUCAUCUUACUGCCUCUUUGGAAAUGAUCUCUUGCCCCAUAUAGCACCAAUUUUUCUAUGACUCGGCUGCUGUGCUUGGGGCAAAAGAUAUGUACAAAUCUGUUUUUUAAUAUUGUGACUUUGAAACUGAUUUCUCUCCAUGGAAUUAAUGCUUUCAGUGUCCCUGGUCUUGUUCUGUUACAGGCAACAGAAC ie_up
ENSG00000197312:+:1:15638306:15643650 ENSG00000197312 ENST00000480945 + 1 15643641 15643850 210 GUACAUCUAGGUGAGCAAAAGGCACUGGGGCUUGCUGUCUUUCUGUAGGCUAUUUGUAGGUAGGGUAGUCGAUUUUCAAGUUUUUAGAGGGUCUUUUGUUGUUAUUUUGUUGUUGUUGUUUUAAAUUUCUUUUGUGUGGGUAUGUCUGAGCUAGCAAGCCUAAUUUCUAGAAGUUUUAAAUCCUGUGUUCCGUCAAAGUUAUGUGUUUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.007782101 0.000227525 5.096063 AGGGAU AGGGAU
FXR1 1 411 0.007782101 0.000597072 3.704183 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM28 1 822 0.007782101 0.001192695 2.705935 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC3 2 1234 0.011673152 0.001789767 2.705351 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
IGF2BP1 1 831 0.007782101 0.001205738 2.690244 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
TARDBP 5 2654 0.023346304 0.003847636 2.601150 GAAUGG,GUGAAU,GUUUUG,UGAAUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPA3 3 2140 0.015564202 0.003102746 2.326614 AAGGAG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
EIF4B 1 1179 0.007782101 0.001710061 2.186112 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 1 1222 0.007782101 0.001772376 2.134475 AGAAGA AAAAGA,AGAAGA
PUM2 2 1890 0.011673152 0.002740445 2.090712 GUACAU,UACAUC GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
YBX2 1 1480 0.007782101 0.002146271 1.858327 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NONO 1 1498 0.007782101 0.002172357 1.840899 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC5 2 2400 0.011673152 0.003479539 1.746226 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
G3BP2 1 1644 0.007782101 0.002383941 1.706812 GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
AGO2 1 1830 0.007782101 0.002653492 1.552267 AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF4 3 3740 0.015564202 0.005421472 1.521475 AGAAGA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CSTF2 1 1967 0.007782101 0.002852033 1.448169 GUUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZRANB2 2 3173 0.011673152 0.004599773 1.343559 AAAGGU,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPA1 16 18070 0.066147860 0.026188565 1.336757 AAGAGG,AAGGAG,AAGGUG,AGAUUA,AGUGAA,CAGGGA,GAGGAA,GAGUGG,GCCAAG,GGAAGG,GGCAGG,GGGCAG,UAGGCA,UAGUGA,UUUAUA AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
RBM3 1 2152 0.007782101 0.003120136 1.318551 GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2A 5 6871 0.023346304 0.009958930 1.229132 AAGAGG,AGAAAG,AGAAGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PUM1 4 5823 0.019455253 0.008440164 1.204817 ACAUAA,CCAGAA,GUACAU,UACAUC AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM24 1 2357 0.007782101 0.003417223 1.187335 GAGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
FUS 2 3648 0.011673152 0.005288145 1.142360 CGGUGG,UGGUGG AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SRSF5 6 8869 0.027237354 0.012854439 1.083320 AGAAGA,CAACAG,GAGGAA,GGAAGA,UACAUC,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SART3 1 2634 0.007782101 0.003818652 1.027096 GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPDL 2 35 0.13636364 0.002357873 5.853829 CUAGGC,UAGGCA AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG
G3BP1 2 69 0.13636364 0.004584752 4.894471 CUAGGC,UAGGCA ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
FMR1 1 117 0.09090909 0.007728583 3.556149 UAGGCA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 UAGGCA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
CELF2 13 881 0.033333333 0.0044437727 2.907109 AUGUGU,GUAUGU,GUUGUU,UAUGUG,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZNF638 9 646 0.023809524 0.0032597743 2.868695 GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SSB 6 505 0.016666667 0.0025493753 2.708750 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 AGGUAG,GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CELF1 10 1097 0.026190476 0.0055320435 2.243158 CUGUCU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM28 2 340 0.007142857 0.0017180572 2.055723 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF4 5 776 0.014285714 0.0039147521 1.867580 GUGUGG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAG,CAUAUA,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUUU,UGUGUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 6 1034 0.016666667 0.0052146312 1.676328 GUUGUU,UGUGUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
TIAL1 29 5597 0.071428571 0.0282043531 1.340583 AAAUUU,AAUUUU,AGUUUU,AUUUUC,AUUUUG,AUUUUU,CUUUUG,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUCAG,UUUUAA,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUACAU,UACAUC,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGUGG,UGUGGG,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
MBNL1 13 3258 0.033333333 0.0164197904 1.021530 AUGCUU,CUGCCA,CUGCCU,CUGCUG,CUUGCU,GCUGCU,GCUUGC,GUGCUU,UGCUGU,UGCUUU,UUGCCC,UUGCUG ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUC,AUUUUG,AUUUUU,CUUUUG,GUUUUA,GUUUUU,UAUUUU,UUAUUU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home