ENSG00000100629:-:14:80743074:80862873

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000100629:-:14:80743074:80862873 ENSG00000100629 ENST00000555265 - 14 80743075 80862873 2161 GUUUCAGAUCGGGUGGAGCGGCGGCUUCAGGAACUGGAGAGAGAGAUGCGCACAGAAAGGGAGCUGGUGGAAAGACGCCAGGAUCAACUGGGACUCAUGUCCCUGCAGCUACAGGAGGCACUAAAGAAACAAGAAGCUAAAGCAGAUGAGCAUGAGGGGGCAAUAAAAAAUAAGCUAAGACAAACUGAAACUGAGAAGAAUCAACUUGAACAGGAAUUGGAGCUAUCUCGAAGGUUAUUGAAUCAAUCAGAAGGCAGCCGAGAAACACUUUUGCAUCAGGUAGAAGAACUGCGUACACAACUUACGAAAGCAGAAGGUGAUCGAAAGGGUUUACAGCAUCAAGUAUCUCAGAUUUCCAAGCAACAGUCAAACUAUCAGGAUGAACAAGGGGAGGACUGGAGAUUUAGGAGAGGGGUUGAGCGGGAAAAACAGGACCUGGAGAAGCAAAUGUCAGAUUUGAGAGUGCAGCUGAACUUCAGCGCAAUGGCAUCUGAGUUAGAGGAAGUGAAACGGUGCAUGGAGAGAAAAGACAAGGAGAAAGCACAUUUGGCAUCACAAGUAGAGAAUUUAACACGUGAACUGGAGAAUGGGGAAAAACAGCAACUGCAGAUGUUGGAUCGACUUAAGGAGAUCCAGAAUCACUUUGACACAUGUGAGGCCGAGCGUAAGCAUGCUGACCUUCAGAUCUCAGAGCUGACUCGCCAUGCGGAGGAUGCAACCAAGCAGGCUGAGCGGUACCUCAGUGAGCUCCAGCAGUCAGAGGCUCUGAAAGAGGAGGCGGAGAAGAGGAGGGAAGACCUGAAACUGAAAGCUCAAGAAUCCAUUAGGCAGUGGAAGCUUAAGCAUAAGAAGUUAGAACGAGCGUUGGAGAAACAAUCUGAAACUGUUGAUGAACUGACAGGCAAGAAUAAUCAGAUUUUAAAAGAAAAGGAUGAAUUGAAAACCCAGCUGUAUGCAGCAUUACAACAAAUAGAGAAUCUUCGAAAGGAAUUGAAUGAUGUCCUAACAAAGCGUGCCCUUCAGGAGGAGGAGCUUCACUCCAAGGAGGAGAAAUUACGUGAUAUUAAGUCUCAUCAAGCUGACCUUGAAUUGGAAGUUAAGAAUUCCCUGGAUACCAUCCAUAGACUGGAGAGCGAAUUGAAAAAGCAGAGUAAGAUCCAAAGCCAGAUGAAAGUUGAGAAAGCUCACUUGGAGGAAGAAAUUGCAGAGCUCAAGAAGAGCCAGGCCCAGGACAAAGCUAAACUUCUUGAGAUGCAAGAGUCCAUCAAGGACCUGAGUGCCAUCCGAGCAGAUCUUGCUAAUAAAUUGGCUGAGGAAGAGAGAGCCAAGAAAGCAGUGCUUAAGGACCUUUCUGACCUCACUGCACAGGCAAAAUCCAGGGAUGAAGAAACAGCUACAAUCAUCACACAGUUAAAGCUGGAACGAGAUGUGCACCAGAGGGAGCUGAAAGAUCUCACAUCAUCAUUGCAGAGUGUGAAAACAAAACACGAACAGAAUAUCCAGGAGCUUAUGAAGCACUUUAAGAAAGAAAAGAGUGAGGCUGAGAAUCAUAUCAGGACUCUGAAGGCUGAAAGUUUAGAAGAGAAGAAUAUGGCUAAAAUUCAUCGUGGUCAGCUGGAGAAGUUGAAAUCACAGUGUGACAGACUGACAGAGGAAUUAACCCAGAAUGAAAAUGAGAACAAAAAACUGAAGCUAAAAUAUCAAUGUUUGAAGGAUCAACUAGAAGAAAGGGAAAAACAUAUAAGCAUUGAAGAGGAGCACUUAAGGAGGAUGGAAGAGGCCAGAUUGCAGCUCAAGGAUCAACUUCUUUGCUUGGAGACUGAACAGGAAUCCAUUCUUGGUGUGAUAGGAAAGGAAAUUGAUGCAGCUUGUAAAACAUUCUCCAAGGACUCAGUGGAGAAAUUAAAAGUUUUUUCAUCUGGUCCUGAUAUACAUUAUGACCCACAUCGCUGGUUAGCAGAAAGCAAGACUAAACUUCAGUGGCUCUGUGAGGAACUGAAAGAGAGAGAAAACAGAGAGAAAAAUCUGCGACACCAGCUGAUGCUCUGCAGACAACAACUCAGGAAUUUGACUGAAAACAAGGAAUCUGAGUUGCAGUGUCUCUUUCAACAGAUAGAAAGGCAGGAGCAGCUUCUGGAUGAAAUACAUCGUGAGAAGAGAGGUUUCAGAUCGGGUGGAGCGGCGGCUUCAGGAACUGGAGAGAGAGAUGCG circ
ENSG00000100629:-:14:80743074:80862873 ENSG00000100629 ENST00000555265 - 14 80743075 80862873 22 UGAGAAGAGAGGUUUCAGAUCG bsj
ENSG00000100629:-:14:80743074:80862873 ENSG00000100629 ENST00000555265 - 14 80862864 80863073 210 CAGUGAUGACUUUCUUUUGUAACUUUCAGUAAGCUUUUUGGCCAGCUAUUUCAUGUUAGCGUCAUUAGAAGGGGCUUUGCAAACAAAACAAUCUUAAAUGCUUUAAGCAGUAGUGUAUCUGCUAUAAAACUAUCUUCUCAAUUUAGUCUGUUUUGCUUGCUAGCUCUAUAAUGCUGCUGUUUCUCUGAAUUCUUAUUAAGGUUUCAGAUC ie_up
ENSG00000100629:-:14:80743074:80862873 ENSG00000100629 ENST00000555265 - 14 80742875 80743084 210 GAGAAGAGAGGUGUGUGUUAGUUGUUCUUUCAUUUUUCUUUGUUUAUAUUUAUGGAAUCCUAAUCCUAGGAUUGGAAAAAAACCUACUUCUGUUGCAUCCCCUUUGGACUAUUUCCAAGCCCAUCUCCUUUUCUUGUCUUUGUCUUCUUAUCUUUCUUCAUUUCUGGGACGAGAAGAGAAAAUUCUUCAGCCACAGCAUUCCUCCUGUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.0009254975 0.0001130379 3.033422 GCAUAA GCAUAA
PABPC3 17 1234 0.0083294771 0.0017897669 2.218454 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ESRP1 1 156 0.0009254975 0.0002275250 2.024204 AGGGAU AGGGAU
NONO 14 1498 0.0069412309 0.0021723567 1.675930 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC5 23 2400 0.0111059695 0.0034795387 1.674367 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPN1 11 1222 0.0055529847 0.0017723764 1.647578 AAAAGA,AGAAGA AAAAGA,AGAAGA
TRA2A 65 6871 0.0305414160 0.0099589296 1.616704 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CNOT4 2 314 0.0013882462 0.0004564992 1.604579 GACAGA GACAGA
RBM6 9 1054 0.0046274873 0.0015289102 1.597725 AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SNRPB2 8 991 0.0041647385 0.0014376103 1.534553 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
SRSF10 124 13860 0.0578435909 0.0200874160 1.525865 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAG,AGAGGA,AGAGGG,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPA3 17 2140 0.0083294771 0.0031027457 1.424680 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
LIN28A 35 4315 0.0166589542 0.0062547643 1.413270 AGGAGA,CGGAGA,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SRSF4 29 3740 0.0138824618 0.0054214720 1.356507 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SART3 20 2634 0.0097177233 0.0038186524 1.347555 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZCRB1 11 1605 0.0055529847 0.0023274215 1.254531 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUUA,GCUUAA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM25 1 268 0.0009254975 0.0003898359 1.247362 AUCGGG AUCGGG,CGGGCA,UCGGGC
SNRNP70 8 1237 0.0041647385 0.0017941145 1.214954 AAUCAA,AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPAB 11 1782 0.0055529847 0.0025839306 1.103696 AAAGAC,AAGACA,ACAAAG,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
TRA2B 48 7329 0.0226746876 0.0106226650 1.093937 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBFOX2 2 452 0.0013882462 0.0006564894 1.080420 UGACUG,UGCAUG UGACUG,UGCAUG
RBM46 29 4554 0.0138824618 0.0066011240 1.072480 AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAG,AUCAAU,AUCAUA,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUG,GAUCAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBFOX1 6 1077 0.0032392411 0.0015622419 1.052038 AGCAUG,GCAUGA,GCAUGC,UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ERI1 3 632 0.0018509949 0.0009173461 1.012763 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPC1 27 4443 0.0129569644 0.0064402624 1.008536 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,AGAAAA,CAAAUA,CGAACA,CUAACA,CUAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRSF7 90 14481 0.0421101342 0.0209873716 1.004646 AAAGGA,AAGAAG,AAGGAC,AAUGAU,ACGAGA,ACUAGA,AGAAGA,AGACUA,AGAGAA,AGAGAG,AGAGAU,AGAGGA,AGAUCU,AGGAAG,AGGACA,AUAGAA,AUAGAC,AUUGAU,CAGAGA,CCGAGA,CGAGAU,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GGACAA,UAGAGA,UCAACA,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 1 11 0.09090909 0.0007859576 6.853829 GAGAGG AGAGGA,AGGAAC,GAGGAA
ZRANB2 2 45 0.13636364 0.0030128373 5.500192 AGGUUU,GAGGUU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SFPQ 2 153 0.13636364 0.0100864553 3.756968 AGAGGU,GAGAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF10 1 160 0.09090909 0.0105449306 3.107875 GAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF2 2 479 0.13636364 0.0314383023 2.116864 AGAGGU,GAGAGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.0410007860 1.148773 AGAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AGAAGA AAAAGA,AGAAGA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
EIF4B 2 226 0.007142857 0.0011436921 2.642803 UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
SSB 5 505 0.014285714 0.0025493753 2.486358 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
IGHMBP2 2 350 0.007142857 0.0017684401 2.014024 AAAAAA AAAAAA
TARDBP 7 1034 0.019047619 0.0052146312 1.868974 GUGUGU,GUUGUU,GUUUUG,UGUGUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF4 5 776 0.014285714 0.0039147521 1.867580 GGUGUG,GUGUGU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUGU,GUUUUG,UGUGUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF2 5 881 0.014285714 0.0044437727 1.684716 GUCUGU,GUGUGU,GUUGUU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA AAAAAA,AAAAAG
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,GUUGUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC1 7 1321 0.019047619 0.0066606207 1.515882 AAAAAA,AAAAAC,AGAAAA,CAAACA,CUAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
MBNL1 15 3258 0.038095238 0.0164197904 1.214175 AUGCUU,CUGCUA,CUGCUG,CUUGCU,GCUGCU,GCUUGC,GCUUUU,GGCUUU,UCUGCU,UGCUGC,UGCUGU,UGCUUU,UUGCUA,UUGCUU,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
IGF2BP2 9 2163 0.023809524 0.0109028617 1.126832 AAAAAC,AAAACA,AAAUUC,ACAAUC,CAAAAC,CAAACA,GAAUUC,GCAAAC,GCAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AGCAGU,AGUAGU,AUGCUG,AUUCCU,CAGUAG,CUGCUA,GCAGUA,GUAGUG ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUGU,UGUGUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAAC,AAAACA,AAAUUC,ACAAUC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AGAAGA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PTBP1 33 8003 0.080952381 0.0403264813 1.005346 ACUUUC,AUCUUC,AUUUUU,CCAUCU,CCUUUU,CUAUCU,CUUCUC,CUUCUU,CUUUCU,CUUUUC,CUUUUU,GUCUUU,UCUUCU,UCUUUC,UCUUUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCUU,UUUUCU,UUUUUC ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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