ENSG00000185842:+:1:225264196:225290082

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000185842:+:1:225264196:225290082 ENSG00000185842 ENST00000682510 + 1 225264197 225290082 1312 UAGCCUAAAACAGAAUAUCACCAUCUUGAUUCCUGAAACUCAUAAGACAGCAACUGGAAGUUCAGAUAAUCCCACUAAAAAGCCAGAAGUUAGAACUAAUAAAAAGUUACUUAAAAAUAAUGAUCAUAAAGGAGUUGUAGUCUCUACAAUAAAUUUUAGCACCAAUGUAACAGCUGCCAAAACCAAGGAGAUGAUUCUUAAGAAGUUAAUAAGAAGAACUAAAGAUACUCUUGGAGCACCAAAAAACAACCGGAUUCUAAUAUUUAUUGAUGAUAUGAAUAUGCCAGUAUCAGAUAUGUAUGGAGCACAGCCACCCCUGGAAUUGAUAAGACAAUUGUUAGAUUUGGGAGGAGUUUAUGAUACUGAAAAAAAUACAUGGAAGAAUAUUCAAGAUCUGUCUAUAGUUGCAGCUUGUGUUCCAGUUGUGAAUGAUAUCAGCCCACGUCUUCUCAAACACUUUUCCAUGCUGGUAUUACCUCAUCCUUCACAAGACAUCUUAUGUACUAUUUUCCAGGCUCAUUUGGGAAUUUAUUUCUCCAUCAAUAACUUCACACCUGAAGUUCAGAAAAGUAAGGAUCAGAUAAUAUCUUGUUCCCUAGCUAUAUACCAUCAAGUACGUCAGAAUAUGUUACCAACUCCAACAAAAUGUCACUACAUGUUUAAUCUUCGAGAUAUGUUUAAGCUUCUCCUAGGAUUGCUGCAAGCUGACAGGACUGUUGUUAACUCCAAAGAGAUGGCUGCUCUGCUCUUUGUUCAUGAAGCCACCCGAGUAUUUCACGAUCGCUUAAUUGAUUUCACUGAUAAAAGCCUUUUCUAUCGGUUGCUUUCAAGGGAACUUGAGAACUGUUUUCAGAUUCAGUGGACCCAAGAAAACCUGAUGAAUCACUCAACUGUAUUUUUGGACUUCUUGGAUAUAAACAAGACUCAUAGAAAAAAGAUUUAUCAGAAUACCAGUGACUAUAAUAAACUUGCCAGUGUACUUGAUGAAUUCCAAAUGAAGUUGGGUUCAAUUUCUUUGGAGCUUUCUCAUUCCAUGGUGUUCUUCAAGGAAGCCAUAGAACACAUCAUAAGAGCAACAAGGGUUCUUCGACAACCAGGGAGUCACAUGUUACUGAUUGGAAUAGAUGGAUGUGGGAAAAAAACAUGUGCAACCUUGGCCUGUUAUUUGACAGAUAAUAAACUAUACCGAGUGCCUAUAUCUCACAAAUGUGCCUACAUCGAAUUCAAAGAAGUCUUUAAAAAGGUGUUUAUUCACGCAGGAUUAAAAGGGAAACCCACUGUUCUGAUGGUUCCCAAUUUAAACAUAGAACAAUAGCCUAAAACAGAAUAUCACCAUCUUGAUUCCUGAAACUCAUAAGACAG circ
ENSG00000185842:+:1:225264196:225290082 ENSG00000185842 ENST00000682510 + 1 225264197 225290082 22 ACAUAGAACAAUAGCCUAAAAC bsj
ENSG00000185842:+:1:225264196:225290082 ENSG00000185842 ENST00000682510 + 1 225263997 225264206 210 GUUAGCUUAUGUUUUGUUCAGUUUGGUAUAAGUUCUUAUGGUGACACUAAUUUCAUCUGAAAAGGUGGAAACAGAAAAAAAAUUUUUCUUGUAAGAGUUAGAAGUAAAAUUCACAAUAUGCUGUUACUUUUUUGUUGUUGUUUAAUAUACCUAUUAUGGUAAACAAACUAAUUUUGAAUCCUUAAAAUAUUUCAUUCCAGUAGCCUAAAA ie_up
ENSG00000185842:+:1:225264196:225290082 ENSG00000185842 ENST00000682510 + 1 225290073 225290282 210 CAUAGAACAAGUAAGUACUUUUUGUCUUUGCUAUUUGCUGAAGUUUGAUAUCUAUGUGGCUACCCCCUCCCCAAAAAUUUAAUAUUUGAAAAGAAAACAAGAAAAUAUUUAUCAAUGGUUCUAUUACCCUACAAUAUCAGUUUUCUUGCAGUAUUCUCUGUUCUUAUCUAGUCAUAGCCCACACAGUUUAUAUAUUUGUAAUGACGCCAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 4 453 0.003810976 0.0006579386 2.534136 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 4 489 0.003810976 0.0007101099 2.424046 ACAAGA,CAAGAC ACAAGA,CAAGAC
MATR3 6 739 0.005335366 0.0010724109 2.314729 AAUCUU,AUCUUA,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC4 10 1251 0.008384146 0.0018144033 2.208169 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGHMBP2 6 813 0.005335366 0.0011796520 2.177226 AAAAAA AAAAAA
RBMS1 3 497 0.003048780 0.0007217036 2.078754 AUAUAC,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 4 632 0.003810976 0.0009173461 2.054622 UUCAGA,UUUCAG UUCAGA,UUUCAG
ZFP36L2 9 1277 0.007621951 0.0018520827 2.041012 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TUT1 4 678 0.003810976 0.0009840095 1.953416 AAAUAC,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM42 2 407 0.002286585 0.0005912752 1.951293 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
PABPC3 8 1234 0.006859756 0.0017897669 1.938386 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPD 19 2837 0.015243902 0.0041128408 1.890025 AAAAAA,AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
NXF1 1 286 0.001524390 0.0004159215 1.873849 AACCUG AACCUG
SNRNP70 7 1237 0.006097561 0.0017941145 1.764960 AUCAAG,AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CNOT4 1 314 0.001524390 0.0004564992 1.739548 GACAGA GACAGA
SART3 15 2634 0.012195122 0.0038186524 1.675169 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
KHDRBS2 10 1858 0.008384146 0.0026940701 1.637876 AAUAAA,AUAAAA,AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SRSF11 3 688 0.003048780 0.0009985015 1.610396 AAGAAG AAGAAG
ZCRB1 8 1605 0.006859756 0.0023274215 1.559425 ACUUAA,AUUUAA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
KHDRBS3 18 3429 0.014481707 0.0049707696 1.542691 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBM46 21 4554 0.016768293 0.0066011240 1.344952 AAUGAA,AAUGAU,AUCAAG,AUCAAU,AUCAUA,AUGAAG,AUGAAU,AUGAUA,AUGAUU,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
IGF2BP1 3 831 0.003048780 0.0012057377 1.338316 AGCACC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPC1 20 4443 0.016006098 0.0064402624 1.313430 AAAAAA,AAAAAC,ACAAAU,ACUAAU,AGAAAA,CAAACA,CUAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AKAP1 1 426 0.001524390 0.0006188101 1.300664 UAUAUA AUAUAU,UAUAUA
RBMS3 5 1283 0.004573171 0.0018607779 1.297289 CUAUAG,CUAUAU,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM41 5 1318 0.004573171 0.0019115000 1.258490 AUACAU,UACAUG,UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL3 12 2867 0.009908537 0.0041563169 1.253366 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZNF638 7 1773 0.006097561 0.0025708878 1.245966 GGUUCU,GUUCUU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
KHDRBS1 17 4064 0.013719512 0.0058910141 1.219641 AUAAAA,AUUUAA,CAAAAU,CUAAAA,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SYNCRIP 6 1634 0.005335366 0.0023694485 1.171036 AAAAAA AAAAAA,UUUUUU
EIF4B 4 1179 0.003810976 0.0017100607 1.156113 CUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPAB 6 1782 0.005335366 0.0025839306 1.046020 AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO2 6 1830 0.005335366 0.0026534924 1.007695 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
ZNF638 8 646 0.021428571 0.0032597743 2.716692 GGUUCU,GUUCUU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
SART3 8 777 0.021428571 0.0039197904 2.450687 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
IGHMBP2 3 350 0.009523810 0.0017684401 2.429061 AAAAAA AAAAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC1 11 1321 0.028571429 0.0066606207 2.100845 AAAAAA,ACAAAC,ACUAAU,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPC4 3 462 0.009523810 0.0023327287 2.029520 AAAAAA AAAAAA,AAAAAG
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM41 3 502 0.009523810 0.0025342604 1.909974 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
CELF2 6 881 0.016666667 0.0044437727 1.907109 GUUGUU,UAUGUG,UAUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SSB 3 505 0.009523810 0.0025493753 1.901395 GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACACUA,ACUAAU,CACUAA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PPIE 47 9262 0.114285714 0.0466696896 1.292087 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAU,AAAUUU,AAUAUA,AAUAUU,AAUUUA,AAUUUU,AUAUAU,AUAUUU,AUUUAA,AUUUAU,AUUUUU,UAAAAU,UAAUAU,UAAUUU,UAUAUA,UAUAUU,UAUUAU,UAUUUA,UUAAAA,UUAAUA,UUAUAU,UUUAAU,UUUAUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AAUAUU,CUUGUA,UAAUAU,UAUAUA,UGUAAU,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU,CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUGUU,GUUUUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAAAAA,AAUUUA,AUUUAU,UAUUUA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUAU,AUUUUG,AUUUUU,CUUUUU,GUUUUC,UAAGUU,UAAUUU,UACUUU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUUA,UAUUUG,UCUUAU,UUACUU,UUAUAU,UUAUGU,UUCAUU,UUUAAU,UUUAUA,UUUCAU,UUUCUU,UUUGAU,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAACA,AAAUUC,AAUUCA,ACAAAC,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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