ENSG00000153107:-:2:111831285:111838512

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000153107:-:2:111831285:111838512 ENSG00000153107 ENST00000341068 - 2 111831286 111838512 585 UUUGACUUUGAAGGAUCACUUUCUCCUGUCAUUGCGCCCAAAAAAGCAAGGCCUUCCGAGACUGGAUCUGAUGAUGACUGGGAAUAUUUACUAAAUUCAGACUACCACCAGAAUGUUGAGUCUCAUCUUUUGAACAGAUCUUUAUGUCUGAGUCCUUCAGAAGCUUCACAGAUGAAGGAUGAGGAUUUUUCACAGAAUCUCAGUCUGGAUUCUUCUACACUUCUCUUUACUCACAUACCUGCAAUUUUUUUCGUUCUUCACCUUGUGUAUGAGGAGCUUAAGUUGAAUACUCUAAUGGGAGAAGGAAUUUGUUCACUUGUUGAACUUCUCGUUCAGUUGGCAAGGGACUUAAAAUUGGGGCCUUAUGUAGAUCAUUACUAUAGAGACUACCCAACGCUUGUCAGAACUACUGGACAAGUGUGCACAAUUGAUCCAGGUCAAACAGGAUUUAUGCAUCAUCCAUCAUUUUUUACGUCUGAGCCACCAAGUAUUUAUCAGUGGGUGAGUUCUUGUCUGAAGGGUGAAGGAAUGCCACCUUAUCCUUACCUCCCUGGAAUCUGUGAAAGAAGCAGACUUGUAGUCUUGUUUGACUUUGAAGGAUCACUUUCUCCUGUCAUUGCGCCCAAAAAAGCAAG circ
ENSG00000153107:-:2:111831285:111838512 ENSG00000153107 ENST00000341068 - 2 111831286 111838512 22 UUGUAGUCUUGUUUGACUUUGA bsj
ENSG00000153107:-:2:111831285:111838512 ENSG00000153107 ENST00000341068 - 2 111838503 111838712 210 UAUUAAUAUGAUUUCAUUUCAUCUUUACAGUAACCUGGAAGAAAGAUAUUUAAAUAAUGCCUUUCCAGAUCAAAAAAUGAGUUUUGAUGGCUUUUCUCAGUUUUCGUAAUUGGCAGAACUGAUUUCUGAAUCCUUGAAGUUGAUCAGUUGACAGGAAUGCAUUUACGAUUUUUAUCUUUUCUUUUGGGGUUACUUUUCAGUUUGACUUUG ie_up
ENSG00000153107:-:2:111831285:111838512 ENSG00000153107 ENST00000341068 - 2 111831086 111831295 210 UGUAGUCUUGGUAUGUAUGUGGAGUGUUACUACCUAUCUCCUUUUUCUUUUAAAAUUUAGUUUUAAAAAGUACACCUGAUAUUAAGUUUUUUUCUGUGUAUAGUUCUGUGAAUUUCAGUACGUGUAUAGAUUCAUGUAAUUACUACAAUGAGGAUAUAGAACAUUUACAUCACCCUCAAAAAUUUCUCUCAUGAUUUCGAGACUUAUCCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPM 6 999 0.011965812 0.0014492040 3.045586 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM42 1 407 0.003418803 0.0005912752 2.531590 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
CPEB4 3 821 0.006837607 0.0011912456 2.521021 UUUUUU UUUUUU
DDX19B 3 821 0.006837607 0.0011912456 2.521021 UUUUUU UUUUUU
EIF4A3 3 821 0.006837607 0.0011912456 2.521021 UUUUUU UUUUUU
ERI1 2 632 0.005128205 0.0009173461 2.482916 UUCAGA UUCAGA,UUUCAG
RBFOX2 1 452 0.003418803 0.0006564894 2.380648 UGACUG UGACUG,UGCAUG
U2AF2 5 1477 0.010256410 0.0021419234 2.259547 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ZFP36L2 4 1277 0.008547009 0.0018520827 2.206271 AUUUAU,UAUUUA AUUUAU,UAUUUA,UUAUUU,UUUAUU
RALY 5 1553 0.010256410 0.0022520629 2.187207 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBM28 2 822 0.005128205 0.0011926949 2.104229 UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CPEB2 7 2261 0.013675214 0.0032780993 2.060632 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 6 2062 0.011965812 0.0029897078 2.000842 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RBM8A 1 611 0.003418803 0.0008869128 1.946627 UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
HNRNPC 10 3471 0.018803419 0.0050316361 1.901895 AUUUUU,GGAUUC,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZCRB1 4 1605 0.008547009 0.0023274215 1.876687 ACUUAA,GACUUA,GAUUUA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SYNCRIP 4 1634 0.008547009 0.0023694485 1.850868 AAAAAA,UUUUUU AAAAAA,UUUUUU
G3BP2 4 1644 0.008547009 0.0023839405 1.842071 AGGAUG,AGGAUU,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TUT1 1 678 0.003418803 0.0009840095 1.796747 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 1 688 0.003418803 0.0009985015 1.775655 AAGAAG AAGAAG
RBM6 2 1054 0.005128205 0.0015289102 1.745950 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ELAVL3 7 2867 0.013675214 0.0041563169 1.718186 AUUUAU,UAUUUA,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBM3 5 2152 0.010256410 0.0031201361 1.716845 AAUACU,AGACUA,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
MATR3 1 739 0.003418803 0.0010724109 1.672634 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPU 4 1965 0.008547009 0.0028491350 1.584896 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
IGHMBP2 1 813 0.003418803 0.0011796520 1.535130 AAAAAA AAAAAA
PABPC4 2 1251 0.005128205 0.0018144033 1.498959 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBMS3 2 1283 0.005128205 0.0018607779 1.462548 CUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZNF638 3 1773 0.006837607 0.0025708878 1.411225 CGUUCU,GUUCUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
NOVA2 8 4013 0.015384615 0.0058171047 1.403115 ACCACC,AGAUCA,AUCAUC,GAUCAC,UAGAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RBM5 14 6879 0.025641026 0.0099705232 1.362713 AAAAAA,AAGGAA,AGGGUG,CAAGGG,CUUCUC,GAAGGA,GAAGGG,UCUUCU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
ELAVL4 10 5105 0.018803419 0.0073996354 1.345469 AAAAAA,AUUUAU,UAUUUA,UCUAAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS2 3 1858 0.006837607 0.0026940701 1.343704 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPD 5 2837 0.010256410 0.0041128408 1.318319 AAAAAA,AUUUAU,UAUUUA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
CELF1 4 2391 0.008547009 0.0034664959 1.301942 UGUCUG,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBMX 9 4925 0.017094017 0.0071387787 1.259742 AAGAAG,AAGGAA,AAGUGU,AGAAGG,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
KHDRBS1 7 4064 0.013675214 0.0058910141 1.214975 AUUUAC,CUAAAU,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
FUS 6 3648 0.011965812 0.0052881452 1.178085 AAAAAA,GGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
RBFOX1 1 1077 0.003418803 0.0015622419 1.129874 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
NOVA1 6 3872 0.011965812 0.0056127669 1.092134 ACCACC,AUCAUC,UCAGUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ELAVL1 9 5554 0.017094017 0.0080503280 1.086372 AUUUAU,UAUUUA,UUGUUU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBM46 7 4554 0.013675214 0.0066011240 1.050780 AUCAUU,AUGAAG,AUGAUG,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPA2B1 14 8607 0.025641026 0.0124747476 1.039443 AAGAAG,AAGGAA,AGAAGC,AGACUA,AGGAGC,CAAGGG,GAAGGA,GGGGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ELAVL2 31 18468 0.054700855 0.0267653478 1.031197 AAUUUG,AAUUUU,AUAUUU,AUUUAC,AUUUAU,AUUUUU,CAUUUU,CUUUCU,GAUUUA,GAUUUU,UAAGUU,UAUUUA,UCAUUU,UCUUUU,UUAAGU,UUAUGU,UUUACU,UUUAUG,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 9 5823 0.017094017 0.0084401638 1.018149 AAUAUU,AAUGUU,CAGAAU,CCAGAA,CUUGUA,GUAGAU,UGUAGA,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CSTF2 1 4 0.09090909 0.0003274823 8.116864 UGUUUG GUGUUG,GUUUUG,UGUGUG,UGUUUG
CELF1 1 5 0.09090909 0.0003929788 7.853829 UGUUUG GUGUUG,UGUCUG,UGUGUG,UGUUGU,UGUUUG
ELAVL1 1 10 0.09090909 0.0007204611 6.979360 UUGUUU UAUUUU,UGGUUU,UUAGUU,UUGGUU,UUUAGU,UUUGGU,UUUGUU
ZFP36 1 126 0.09090909 0.0083180508 3.450107 UCUUGU AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUUCAG UUCAGA,UUUCAG
A1CF 6 598 0.016666667 0.0030179363 2.465331 AUCAGU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM6 1 191 0.004761905 0.0009673519 2.299426 UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM41 3 502 0.009523810 0.0025342604 1.909974 UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RC3H1 4 631 0.011904762 0.0031841999 1.902536 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TIAL1 37 5597 0.090476190 0.0282043531 1.681620 AAAUUU,AGUUUU,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 UAAAUA,UACAUC,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
TIA1 27 5140 0.066666667 0.0259018541 1.363910 AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UCCUUU,UCUCCU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUUUAA,AUUUAC,UAAAAA,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AUCAAA,AUGAUU,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AGUAAC,AGUGUU,AUCAAA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GACUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 43 9826 0.104761905 0.0495112858 1.081285 AAUUUA,AUAUUU,AUUUAA,AUUUAC,AUUUAG,AUUUUU,CUUUUA,CUUUUU,GAUUUU,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UACUUU,UAUUUA,UCAUUU,UCUUUU,UGAUUU,UUAAGU,UUACUU,UUAGUU,UUCAUU,UUCUUU,UUUAGU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAAA,AGAAAG,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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