ENSG00000158019:+:2:28025225:28129380

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000158019:+:2:28025225:28129380 ENSG00000158019 ENST00000344773 + 2 28025226 28129380 380 AAUCUUGCCUCCUGGAAUCCUUCAAAUCCUGAAUGUCUCUUACUUGUGGUGAAGGAACUUGUGCAACAAUAUCACCAAUUCCAAUGUAGCCGCCUCCGGGAGAGCUCCCGCCUCAUGUUUGAAUACCAGACAUUACUGGAGGAGCCACAGUAUGGAGAGAACAUGGAAAUUUAUGCUGGGAAAAAAAACAACUGGACUGGUGAAUUUUCAGCUCGUUUCCUUUUGAAGCUGCCCGUAGAUUUCAGCAAUAUCCCCACAUACCUUCUCAAGGAUGUAAAUGAAGACCCUGGAGAAGAUGUGGCCCUCCUCUCUGUUAGUUUUGAGGACACUGAAGCCACCCAGGUGUACCCCAAGCUGUACUUGUCACCUCGAAUUGAGCAAAUCUUGCCUCCUGGAAUCCUUCAAAUCCUGAAUGUCUCUUACUUGUGGU circ
ENSG00000158019:+:2:28025225:28129380 ENSG00000158019 ENST00000344773 + 2 28025226 28129380 22 CGAAUUGAGCAAAUCUUGCCUC bsj
ENSG00000158019:+:2:28025225:28129380 ENSG00000158019 ENST00000344773 + 2 28025026 28025235 210 GAUUUUUUUAGAAGGCAGGAGAAAUUGCCAAUAUCAAAAGAUUUCUCUAACUUCAUCUCUGGGUAUAUGGCUAAGGAGGAGUAGUCUGUUCCUCUUAGAUUUCUAUUACUCUUUUCCUCUACAUUGAUGUGUGAAUGUGAUACUGGAUUUGUAUGAAAUUUCAGUUUUAACUGGUCUUUUAUUUGUUACGACUUCUACAGAAUCUUGCCU ie_up
ENSG00000158019:+:2:28025225:28129380 ENSG00000158019 ENST00000344773 + 2 28129371 28129580 210 GAAUUGAGCAGUAAGUGUCAUUAACAUGAGGUAGCCUGGUGCUACUUCUUGCUAACCAAUAUGUCUCAUUCUUUCUUUUGCCACUCUUGAACUCUUACAUUUAUUUCUCUUCAUUGACUUUUGUUUUCUUAAAAAAUUCAUCAUAUUAAGAGUUUCCAUUGCAGAGUAAAUGCAGUUAGUACUUGCCACUACACCCUUUUGGCAAGUGUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 1 267 0.005263158 0.0003883867 3.760363 CUCUCU CUCUCU
IGHMBP2 3 813 0.010526316 0.0011796520 3.157567 AAAAAA AAAAAA
ERI1 2 632 0.007894737 0.0009173461 3.105353 UUUCAG UUCAGA,UUUCAG
HNRNPA0 1 453 0.005263158 0.0006579386 2.999904 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 2 739 0.007894737 0.0010724109 2.880033 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC4 3 1251 0.010526316 0.0018144033 2.536433 AAAAAA AAAAAA,AAAAAG
RBM41 3 1318 0.010526316 0.0019115000 2.461223 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPM 2 999 0.007894737 0.0014492040 2.445631 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TARDBP 6 2654 0.018421053 0.0038476365 2.259311 GAAUGU,GUGAAU,GUUUUG,UGAAUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SYNCRIP 3 1634 0.010526316 0.0023694485 2.151377 AAAAAA AAAAAA,UUUUUU
PABPC3 2 1234 0.007894737 0.0017897669 2.141119 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 5 2634 0.015789474 0.0038186524 2.047828 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
IFIH1 1 904 0.005263158 0.0013115296 2.004678 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
AGO2 3 1830 0.010526316 0.0026534924 1.988036 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PUM2 3 1890 0.010526316 0.0027404447 1.941519 GUAAAU,GUAGAU,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPD 5 2837 0.015789474 0.0041128408 1.940756 AAAAAA,AAUUUA,AUUUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPU 3 1965 0.010526316 0.0028491350 1.885405 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
YBX2 2 1480 0.007894737 0.0021462711 1.879059 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPA3 3 2140 0.010526316 0.0031027457 1.762383 AGGAGC,CAAGGA,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PABPC1 7 4443 0.021052632 0.0064402624 1.708809 AAAAAA,AAAAAC,CAAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
FUS 5 3648 0.015789474 0.0052881452 1.578129 AAAAAA,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
PABPN1 1 1222 0.005263158 0.0017723764 1.570244 AGAAGA AAAAGA,AGAAGA
ZFP36L2 1 1277 0.005263158 0.0018520827 1.506780 AUUUAU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CSTF2 2 1967 0.007894737 0.0028520334 1.468900 GUUUUG,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ESRP2 2 2150 0.007894737 0.0031172377 1.340623 GGGAAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
LIN28A 5 4315 0.015789474 0.0062547643 1.335936 GGAGAA,GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
DAZAP1 7 5964 0.021052632 0.0086445016 1.284146 AAAAAA,AAUUUA,AGGAUG,AGUAUG,UAGUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
NONO 1 1498 0.005263158 0.0021723567 1.276668 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
NELFE 3 3028 0.010526316 0.0043896388 1.261826 CUCUCU,GUCUCU,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM4 3 3065 0.010526316 0.0044432593 1.244310 CCUUCU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
A1CF 1 1642 0.005263158 0.0023810421 1.144336 CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 1 1644 0.005263158 0.0023839405 1.142580 AGGAUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM5 7 6879 0.021052632 0.0099705232 1.078259 AAAAAA,AAGGAA,CAAGGA,CUUCUC,GAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
RC3H1 1 1786 0.005263158 0.0025897275 1.023128 CCUUCU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC1 1 19 0.09090909 0.001309929 6.116864 CAAAUC AAAAAA,ACAAAC,ACGAAU,AGAAAA,CAAACC,CAAAUA,CGAACA,CUAAUA,GAAAAA,GAAAAC
IGF2BP2 1 34 0.09090909 0.002292376 5.309509 CAAAUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC
ZFP36 1 126 0.09090909 0.008318051 3.450107 AGCAAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO1 3 283 0.009523810 0.0014308746 2.734641 AGGUAG,GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 3 288 0.009523810 0.0014560661 2.709463 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM41 4 502 0.011904762 0.0025342604 2.231902 UACAUU,UACUUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SRSF3 25 3825 0.061904762 0.0192765014 1.683207 ACGACU,ACUACA,ACUUCA,ACUUCU,AUUCAU,CACUAC,CAUCAU,CCUCUU,CUACAC,CUACAG,CUCUUC,CUUCAU,CUUCUU,GACUUC,UACGAC,UACUUC,UAUCAA,UCAUCA,UCAUCU,UCUUCA,UUACGA,UUCAUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
LIN28A 5 900 0.014285714 0.0045395002 1.653968 AGGAGA,AGGAGU,GGAGAA,GGAGGA,GGAGUA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGU,GUGAAU,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
NELFE 5 1059 0.014285714 0.0053405885 1.419503 CUCUGG,GCUAAC,GGCUAA,UCUCUG,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SNRPA 10 1947 0.026190476 0.0098145909 1.416042 AGCAGU,AGGAGA,AGUAGU,AUUGCA,GAGCAG,GCAGUA,GGGUAU,GUAGUC,GUUUCC,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
QKI 4 904 0.011904762 0.0045596534 1.384543 AUCAUA,AUUAAC,CUAACC,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGUGU,AGAAGG,AGUGUU,AUCAAA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAGG,AGGUAG,AGUAAG,AGUUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAAAAA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUCUU,CUCUUU,CUUCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,GUCUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AAAAAA,AUUUAU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG
PTBP1 33 8003 0.080952381 0.0403264813 1.005346 ACUUUU,AUUUUU,CCUCUU,CCUUUU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCUU,CUUUCU,CUUUUC,GUCUUU,UCCUCU,UCUCUU,UCUUUC,UCUUUU,UUAUUU,UUCUCU,UUCUUG,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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