ENSG00000144354:+:2:173358711:173359491

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000144354:+:2:173358711:173359491 ENSG00000144354 MSTRG.19509.2 + 2 173358712 173359491 363 CAGAAAGAUCUCAGAGUAAAGAAGAACUUAAAGAAAUUCAGAUAUGUGAAGUUGAUUUCCAUGGAAACCUCGUCAUCCUCUGAUGACAGUUGUGACAGCUUUGCUUCUGAUAAUUUUGCAAACACGAAACCUAAAUUCAGGUCAGAUAUCAGUGAAGAACUGGCAAAUGUUUUUUAUGAGGACUCUGAUAAUGAAUCUUUCUGCGGCUUUUCAGAAAGUGAGGUGCAAGAUGUAUUAGACCAUUGUGGAUUUUUACAGAAACCAAGGCCAGAUGUCACUAACGAACUGGCCGGUAUUUUUCAUGCCGACUCUGACGAUGAAUCAUUUUGCGGUUUCUCAGAGAGUGAGAUACAAGAUGGAAUGCAGAAAGAUCUCAGAGUAAAGAAGAACUUAAAGAAAUUCAGAUAUGUGAA circ
ENSG00000144354:+:2:173358711:173359491 ENSG00000144354 MSTRG.19509.2 + 2 173358712 173359491 22 AAGAUGGAAUGCAGAAAGAUCU bsj
ENSG00000144354:+:2:173358711:173359491 ENSG00000144354 MSTRG.19509.2 + 2 173358512 173358721 210 AGAGCGAGAUCCUGCUUCUUACAAAAAAAAGAAAGAAAAAAUUUUUUGUAGCAGUUAACAAACUUCCUUUUCUAUGUAGGGUAUGAUAAAUGGACAUAUCUACUCUGUGCUGUUUGAACCUACUAAACUAAAAAAAAAUGAUGUCUUUAGUUAAAUAAAGUAAGCAUCACGCUUAAUAGGAUUGCUAUUUCCAUUUGCAGCAGAAAGAUC ie_up
ENSG00000144354:+:2:173358711:173359491 ENSG00000144354 MSTRG.19509.2 + 2 173359482 173359691 210 AGAUGGAAUGGUGAGUUCGAGAAUUUCACCAGUUUCAAGAAGUAAGAUACAUUUAGAGGCAUGACAUAUUUUUAGAAAUUUUUUUCUUGUGAUUUUGAUUUUAGUCAUGCCAGCAGACUUUGUUGACCUUUUAAAAAUUUUUAGUGUUUUCUUCAUGUCUUAAAGCAGUGUUUACUAAUGUAGUCGGACUUACAAAUCAUGAACAUUUUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 2 453 0.008264463 0.0006579386 3.650896 AGAUAU AAUUUA,AGAUAU,AGUAGG
ERI1 3 632 0.011019284 0.0009173461 3.586420 UUCAGA,UUUCAG UUCAGA,UUUCAG
ANKHD1 1 339 0.005509642 0.0004927293 3.483091 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
FXR1 1 411 0.005509642 0.0005970720 3.205982 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 489 0.005509642 0.0007101099 2.955844 ACAAGA ACAAGA,CAAGAC
AGO1 1 548 0.005509642 0.0007956130 2.791820 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
TUT1 1 678 0.005509642 0.0009840095 2.485214 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 1 688 0.005509642 0.0009985015 2.464122 AAGAAG AAGAAG
MATR3 1 739 0.005509642 0.0010724109 2.361101 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC5 5 2400 0.016528926 0.0034795387 2.248025 AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CPEB4 1 821 0.005509642 0.0011912456 2.209488 UUUUUU UUUUUU
DDX19B 1 821 0.005509642 0.0011912456 2.209488 UUUUUU UUUUUU
EIF4A3 1 821 0.005509642 0.0011912456 2.209488 UUUUUU UUUUUU
CPEB2 4 2261 0.013774105 0.0032780993 2.071027 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
U2AF2 2 1477 0.008264463 0.0021419234 1.948014 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPC 6 3471 0.019283747 0.0050316361 1.938286 AUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 3 2062 0.011019284 0.0029897078 1.881954 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RALY 2 1553 0.008264463 0.0022520629 1.875674 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
A1CF 2 1642 0.008264463 0.0023810421 1.795328 AUAAUU,AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
QKI 4 2805 0.013774105 0.0040664663 1.760111 AAUCAU,ACUAAC,CACUAA,CUAACG AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TIAL1 17 10182 0.049586777 0.0147572438 1.748532 AAUUUU,AUUUUG,AUUUUU,CUUUUC,GUUUUU,UAAAUU,UAUUUU,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TRA2A 11 6871 0.033057851 0.0099589296 1.730930 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PABPN1 1 1222 0.005509642 0.0017723764 1.636273 AGAAGA AAAAGA,AGAAGA
SSB 1 1260 0.005509642 0.0018274462 1.592130 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 1 1283 0.005509642 0.0018607779 1.566053 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM46 6 4554 0.019283747 0.0066011240 1.546602 AAUCAU,AAUGAA,AUCAUU,AUGAAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
TARDBP 3 2654 0.011019284 0.0038476365 1.517986 GUUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TRA2B 10 7329 0.030303030 0.0106226650 1.512316 AAAGAA,AAGAAC,AAGAAG,AGAAGA,GAAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
IGF2BP3 6 4815 0.019283747 0.0069793662 1.466217 AAACAC,AAAUUC,AAUUCA,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
TIA1 12 9206 0.035812672 0.0133428208 1.424406 AUUUUG,AUUUUU,CUUUUC,GUUUUU,UAUUUU,UUUUAU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 4 3740 0.013774105 0.0054214720 1.345202 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBM24 2 2357 0.008264463 0.0034172229 1.274097 AGAGUG,GAGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 1 1605 0.005509642 0.0023274215 1.243226 ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
ELAVL2 22 18468 0.063360882 0.0267653478 1.243226 AAUUUU,AUUUUG,AUUUUU,CAUUUU,CUUUCU,GAUUUU,GUUUUU,UAAUUU,UAUUUU,UCAUUU,UGAUUU,UGUAUU,UUGAUU,UUUAUG,UUUCAU,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SYNCRIP 1 1634 0.005509642 0.0023694485 1.217407 UUUUUU AAAAAA,UUUUUU
ELAVL4 5 5105 0.016528926 0.0073996354 1.159467 UAUUUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
FXR2 3 3434 0.011019284 0.0049780156 1.146388 UGACAG,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RC3H1 1 1786 0.005509642 0.0025897275 1.089158 CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
AGO2 1 1830 0.005509642 0.0026534924 1.054066 AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
ELAVL1 5 5554 0.016528926 0.0080503280 1.037873 UAUUUU,UGAUUU,UGUUUU,UUGAUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS2 1 1858 0.005509642 0.0026940701 1.032171 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CELF2 1 1886 0.005509642 0.0027346479 1.010603 UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPD 2 2837 0.008264463 0.0041128408 1.006786 AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YTHDC1 1 20 0.09090909 0.001375426 6.046474 GAAUGC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC
SRSF5 1 44 0.09090909 0.002947341 4.946939 UGCAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF2 2 479 0.13636364 0.031438302 2.116864 GAAUGC,UGCAGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGHMBP2 8 350 0.021428571 0.0017684401 3.598986 AAAAAA AAAAAA
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PABPC4 9 462 0.023809524 0.0023327287 3.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
AGO2 9 677 0.023809524 0.0034159613 2.801175 AAAAAA,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 GAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SART3 10 777 0.026190476 0.0039197904 2.740194 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUCGGA,UCGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SYNCRIP 11 1041 0.028571429 0.0052498992 2.444212 AAAAAA,UUUUUU AAAAAA,UUUUUU
PABPC1 14 1321 0.035714286 0.0066606207 2.422773 AAAAAA,ACAAAC,ACAAAU,ACUAAU,AGAAAA,CAAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
HNRNPU 11 1136 0.028571429 0.0057285369 2.318335 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAA,AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SSB 4 505 0.011904762 0.0025493753 2.223323 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
TRA2A 9 1133 0.023809524 0.0057134220 2.059112 AAAGAA,AAGAAA,AAGAAG,AGAAAG,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM28 2 340 0.007142857 0.0017180572 2.055723 UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
FUS 12 1711 0.030952381 0.0086255542 1.843361 AAAAAA,UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
CPEB2 10 1487 0.026190476 0.0074969770 1.804661 AUUUUU,CAUUUU,CCUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,UUAGAG AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
QKI 5 904 0.014285714 0.0045596534 1.647577 AAUCAU,ACUAAU,AUCUAC,CUACUC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPCL1 8 1381 0.021428571 0.0069629182 1.621772 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
DAZAP1 17 2878 0.042857143 0.0145052398 1.562962 AAAAAA,AGUAAG,AGUUAA,UAGGAU,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPC 11 2006 0.028571429 0.0101118501 1.498526 AUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 AAAAAA,UAUCUA,UAUUUU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 AAUAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAU,AAUGAU,AUCAUG,AUGAUA,AUGAUG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AAAUAA,AAUAAA,AUAAAG,GAUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
SF1 6 1294 0.016666667 0.0065245869 1.353007 ACUAAU,AGUAAG,UAACAA,UACUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGAAG,AAGUAA,AGUGUU,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
TIAL1 28 5597 0.069047619 0.0282043531 1.291674 AAAUUU,AAUUUU,AUUUUA,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,GUUUUC,UAUUUU,UUAAAU,UUUAAA,UUUUAA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AGGCAU,AGUCAU,GAGGCA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PPIE 42 9262 0.102380952 0.0466696896 1.133390 AAAAAA,AAAAAU,AAAAUU,AAAUAA,AAAUUU,AAUAAA,AAUUUU,AUAAAU,AUAUUU,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUUAAA,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 CUAAAA,UAAAAA,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AGCAGU,CCUGCU,GGGUAU,GGUAUG,GUAGGG,GUAGUC,UCCUGC ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CUUCCU,CUUCUU,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 UAUUUU,UGAUUU,UGUUUU,UUAGUU,UUGAUU,UUUAGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GACUUA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TIA1 22 5140 0.054761905 0.0259018541 1.080117 AUUUUG,AUUUUU,CUUUUA,CUUUUC,GUUUUC,UAUUUU,UCCUUU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36 40 9408 0.097619048 0.0474052801 1.042115 AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAGAA,AAAGCA,AAAGUA,AAAUAA,AACAAA,AAGAAA,AAGUAA,AAUAAA,ACAAAC,ACAAAU,ACCUUU,ACUUCC,AGAAAG,AUAAAG,AUAAAU,CCUUUU,UAAAUA,UAAGCA,UCCUGC,UCCUUU,UCUUGU,UUUAAA AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUU,AUAUUU,AUUUAG,AUUUUA,AUUUUG,AUUUUU,CAUUUU,CUUUUA,GAUUUU,GUUUUC,UAGUUA,UAUUUU,UGAUUU,UUAGUU,UUGAUU,UUUACU,UUUAGU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAAAAA,AGGGUA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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